Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1037 and GFF1038 are separated by 37 nucleotides GFF1038 and GFF1039 are separated by 15 nucleotides GFF1039 and GFF1040 are separated by 170 nucleotides
GFF1037 - putative membrane protein, at 354,414 to 355,331
GFF1037
GFF1038 - hypothetical protein, at 355,369 to 356,274
GFF1038
GFF1039 - Far-related protein, at 356,290 to 357,171
GFF1039
GFF1040 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 357,342 to 358,244
GFF1040
Position (kb) 356
357
358 Strain fitness (log2 ratio) -2
-1
0
1
2 at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.594 kb on + strand, within GFF1038 at 355.594 kb on + strand, within GFF1038 at 355.594 kb on + strand, within GFF1038 at 355.594 kb on + strand, within GFF1038 at 355.594 kb on + strand, within GFF1038 at 355.595 kb on - strand, within GFF1038 at 355.595 kb on - strand, within GFF1038 at 355.595 kb on - strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.874 kb on - strand, within GFF1038 at 355.874 kb on - strand, within GFF1038 at 355.874 kb on - strand, within GFF1038 at 355.874 kb on - strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.978 kb on + strand, within GFF1038 at 355.978 kb on + strand, within GFF1038 at 355.978 kb on + strand, within GFF1038 at 355.979 kb on - strand, within GFF1038 at 355.979 kb on - strand, within GFF1038 at 355.979 kb on - strand, within GFF1038 at 355.979 kb on - strand, within GFF1038 at 356.050 kb on + strand, within GFF1038 at 356.050 kb on + strand, within GFF1038 at 356.050 kb on + strand, within GFF1038 at 356.050 kb on + strand, within GFF1038 at 356.050 kb on + strand, within GFF1038 at 356.051 kb on - strand, within GFF1038 at 356.051 kb on - strand, within GFF1038 at 356.051 kb on - strand, within GFF1038 at 356.095 kb on + strand, within GFF1038 at 356.095 kb on + strand, within GFF1038 at 356.095 kb on + strand, within GFF1038 at 356.096 kb on - strand, within GFF1038 at 356.096 kb on - strand, within GFF1038 at 356.096 kb on - strand, within GFF1038 at 356.116 kb on + strand, within GFF1038 at 356.116 kb on + strand, within GFF1038 at 356.116 kb on + strand, within GFF1038 at 356.117 kb on - strand, within GFF1038 at 356.117 kb on - strand, within GFF1038 at 356.117 kb on - strand, within GFF1038 at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.222 kb on - strand at 356.222 kb on - strand at 356.222 kb on - strand at 356.222 kb on - strand at 356.222 kb on - strand at 356.222 kb on - strand at 356.222 kb on - strand at 356.222 kb on - strand at 356.498 kb on + strand, within GFF1039 at 356.498 kb on + strand, within GFF1039 at 356.498 kb on + strand, within GFF1039 at 356.499 kb on - strand, within GFF1039 at 356.527 kb on + strand, within GFF1039 at 356.528 kb on - strand, within GFF1039 at 356.528 kb on - strand, within GFF1039 at 356.528 kb on - strand, within GFF1039 at 356.528 kb on - strand, within GFF1039 at 356.609 kb on + strand, within GFF1039 at 356.610 kb on - strand, within GFF1039 at 356.610 kb on - strand, within GFF1039 at 356.610 kb on - strand, within GFF1039 at 356.693 kb on + strand, within GFF1039 at 356.694 kb on - strand, within GFF1039 at 356.694 kb on - strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.744 kb on + strand, within GFF1039 at 356.745 kb on - strand, within GFF1039 at 356.745 kb on - strand, within GFF1039 at 356.745 kb on - strand, within GFF1039 at 356.745 kb on - strand, within GFF1039 at 356.964 kb on - strand, within GFF1039 at 356.987 kb on + strand, within GFF1039 at 356.988 kb on - strand, within GFF1039 at 356.988 kb on - strand, within GFF1039 at 356.988 kb on - strand, within GFF1039 at 357.002 kb on + strand, within GFF1039 at 357.002 kb on + strand, within GFF1039 at 357.002 kb on + strand, within GFF1039 at 357.002 kb on + strand, within GFF1039 at 357.002 kb on + strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.003 kb on - strand, within GFF1039 at 357.270 kb on + strand at 357.270 kb on + strand at 357.270 kb on + strand at 357.270 kb on + strand at 357.271 kb on - strand at 357.271 kb on - strand at 357.271 kb on - strand at 357.271 kb on - strand at 357.271 kb on - strand at 357.295 kb on - strand at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.711 kb on + strand, within GFF1040 at 357.712 kb on - strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.834 kb on + strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 357.835 kb on - strand, within GFF1040 at 358.155 kb on + strand at 358.155 kb on + strand at 358.155 kb on + strand at 358.155 kb on + strand at 358.156 kb on - strand at 358.156 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 355,355 + +0.6 355,355 + -0.2 355,355 + +0.1 355,355 + -0.5 355,355 + -0.3 355,355 + +0.1 355,355 + -0.8 355,355 + +1.6 355,355 + +1.2 355,355 + -0.2 355,355 + +1.6 355,355 + +0.5 355,355 + +0.6 355,355 + +0.5 355,355 + -0.4 355,355 + -0.1 355,356 - -0.1 355,356 - -0.3 355,356 - -0.3 355,356 - -0.4 355,356 - -1.0 355,356 - +0.5 355,356 - -0.4 355,356 - +1.2 355,356 - -0.3 355,356 - -0.4 355,356 - -0.5 355,356 - -0.2 355,356 - -0.7 355,356 - -0.2 355,356 - -0.4 355,356 - +0.8 355,356 - +0.9 355,356 - +0.2 355,356 - +0.4 355,356 - -0.0 355,356 - +0.4 355,594 + GFF1038 0.25 -0.0 355,594 + GFF1038 0.25 +0.2 355,594 + GFF1038 0.25 -0.1 355,594 + GFF1038 0.25 -0.2 355,594 + GFF1038 0.25 +1.1 355,595 - GFF1038 0.25 -0.4 355,595 - GFF1038 0.25 +0.1 355,595 - GFF1038 0.25 -0.2 355,738 + GFF1038 0.41 +0.6 355,738 + GFF1038 0.41 +0.4 355,738 + GFF1038 0.41 -0.7 355,738 + GFF1038 0.41 -0.6 355,738 + GFF1038 0.41 -0.1 355,738 + GFF1038 0.41 -1.1 355,738 + GFF1038 0.41 -0.6 355,739 - GFF1038 0.41 -0.4 355,739 - GFF1038 0.41 -0.0 355,739 - GFF1038 0.41 +0.1 355,739 - GFF1038 0.41 -0.4 355,739 - GFF1038 0.41 -0.3 355,739 - GFF1038 0.41 -0.7 355,739 - GFF1038 0.41 -0.5 355,873 + GFF1038 0.56 -0.6 355,873 + GFF1038 0.56 +1.2 355,873 + GFF1038 0.56 -0.0 355,873 + GFF1038 0.56 +0.6 355,873 + GFF1038 0.56 -1.0 355,873 + GFF1038 0.56 +0.2 355,873 + GFF1038 0.56 -0.1 355,873 + GFF1038 0.56 -0.5 355,873 + GFF1038 0.56 -1.4 355,873 + GFF1038 0.56 +0.4 355,873 + GFF1038 0.56 -0.2 355,874 - GFF1038 0.56 +0.2 355,874 - GFF1038 0.56 -0.2 355,874 - GFF1038 0.56 +0.3 355,874 - GFF1038 0.56 +0.3 355,933 + GFF1038 0.62 -0.5 355,933 + GFF1038 0.62 -0.5 355,933 + GFF1038 0.62 -0.9 355,933 + GFF1038 0.62 +1.6 355,933 + GFF1038 0.62 +0.6 355,933 + GFF1038 0.62 -0.7 355,933 + GFF1038 0.62 -0.4 355,933 + GFF1038 0.62 -0.9 355,933 + GFF1038 0.62 +0.3 355,933 + GFF1038 0.62 -0.6 355,933 + GFF1038 0.62 -0.3 355,934 - GFF1038 0.62 -0.1 355,934 - GFF1038 0.62 -0.7 355,934 - GFF1038 0.62 -0.5 355,934 - GFF1038 0.62 +0.9 355,934 - GFF1038 0.62 +0.6 355,934 - GFF1038 0.62 -0.1 355,934 - GFF1038 0.62 +0.6 355,939 + GFF1038 0.63 +2.6 355,939 + GFF1038 0.63 +0.1 355,939 + GFF1038 0.63 +0.5 355,939 + GFF1038 0.63 -0.6 355,939 + GFF1038 0.63 -0.8 355,939 + GFF1038 0.63 -0.4 355,939 + GFF1038 0.63 +1.1 355,940 - GFF1038 0.63 +0.3 355,940 - GFF1038 0.63 -0.1 355,940 - GFF1038 0.63 -1.0 355,940 - GFF1038 0.63 +0.4 355,940 - GFF1038 0.63 +1.1 355,940 - GFF1038 0.63 -0.1 355,940 - GFF1038 0.63 +0.2 355,940 - GFF1038 0.63 -0.4 355,940 - GFF1038 0.63 -0.5 355,940 - GFF1038 0.63 +0.2 355,940 - GFF1038 0.63 +0.1 355,978 + GFF1038 0.67 +1.6 355,978 + GFF1038 0.67 -0.5 355,978 + GFF1038 0.67 -0.2 355,979 - GFF1038 0.67 -0.2 355,979 - GFF1038 0.67 -0.5 355,979 - GFF1038 0.67 -0.4 355,979 - GFF1038 0.67 -0.1 356,050 + GFF1038 0.75 +1.1 356,050 + GFF1038 0.75 -0.3 356,050 + GFF1038 0.75 +0.3 356,050 + GFF1038 0.75 -1.5 356,050 + GFF1038 0.75 -0.5 356,051 - GFF1038 0.75 -0.5 356,051 - GFF1038 0.75 +1.0 356,051 - GFF1038 0.75 -0.9 356,095 + GFF1038 0.80 -1.5 356,095 + GFF1038 0.80 -0.4 356,095 + GFF1038 0.80 -0.6 356,096 - GFF1038 0.80 +1.6 356,096 - GFF1038 0.80 -0.7 356,096 - GFF1038 0.80 +1.2 356,116 + GFF1038 0.82 +0.6 356,116 + GFF1038 0.82 -1.6 356,116 + GFF1038 0.82 -0.6 356,117 - GFF1038 0.83 -0.2 356,117 - GFF1038 0.83 +0.2 356,117 - GFF1038 0.83 +0.8 356,221 + +0.6 356,221 + -0.8 356,221 + -0.7 356,221 + -0.4 356,221 + -0.9 356,221 + +0.1 356,221 + +0.6 356,221 + -0.1 356,221 + +0.1 356,221 + -0.3 356,221 + +0.2 356,222 - -0.2 356,222 - -0.3 356,222 - -0.4 356,222 - -0.4 356,222 - -0.2 356,222 - -0.9 356,222 - +0.9 356,222 - -0.2 356,498 + GFF1039 0.24 +1.1 356,498 + GFF1039 0.24 -0.7 356,498 + GFF1039 0.24 -0.9 356,499 - GFF1039 0.24 -0.3 356,527 + GFF1039 0.27 +0.3 356,528 - GFF1039 0.27 +0.2 356,528 - GFF1039 0.27 -1.1 356,528 - GFF1039 0.27 -0.7 356,528 - GFF1039 0.27 -1.9 356,609 + GFF1039 0.36 -0.7 356,610 - GFF1039 0.36 +0.8 356,610 - GFF1039 0.36 -0.3 356,610 - GFF1039 0.36 -0.0 356,693 + GFF1039 0.46 +0.4 356,694 - GFF1039 0.46 -0.2 356,694 - GFF1039 0.46 +1.0 356,744 + GFF1039 0.51 -1.4 356,744 + GFF1039 0.51 -0.4 356,744 + GFF1039 0.51 +0.1 356,744 + GFF1039 0.51 +0.6 356,744 + GFF1039 0.51 -1.0 356,744 + GFF1039 0.51 +1.2 356,744 + GFF1039 0.51 -0.4 356,744 + GFF1039 0.51 -1.4 356,744 + GFF1039 0.51 -1.4 356,745 - GFF1039 0.52 -0.1 356,745 - GFF1039 0.52 +0.3 356,745 - GFF1039 0.52 -0.3 356,745 - GFF1039 0.52 -1.1 356,964 - GFF1039 0.76 +2.4 356,987 + GFF1039 0.79 +0.4 356,988 - GFF1039 0.79 -1.3 356,988 - GFF1039 0.79 +0.4 356,988 - GFF1039 0.79 +0.1 357,002 + GFF1039 0.81 -0.9 357,002 + GFF1039 0.81 -1.0 357,002 + GFF1039 0.81 +0.9 357,002 + GFF1039 0.81 -2.7 357,002 + GFF1039 0.81 +0.3 357,003 - GFF1039 0.81 -1.9 357,003 - GFF1039 0.81 -0.0 357,003 - GFF1039 0.81 -0.1 357,003 - GFF1039 0.81 -0.9 357,003 - GFF1039 0.81 -1.2 357,003 - GFF1039 0.81 +1.1 357,003 - GFF1039 0.81 -1.0 357,003 - GFF1039 0.81 -0.7 357,003 - GFF1039 0.81 +0.6 357,003 - GFF1039 0.81 -1.4 357,270 + +0.6 357,270 + +2.2 357,270 + -0.8 357,270 + +0.1 357,271 - +0.3 357,271 - -1.7 357,271 - -0.3 357,271 - -2.2 357,271 - +0.2 357,295 - -0.8 357,711 + GFF1040 0.41 +0.3 357,711 + GFF1040 0.41 -1.1 357,711 + GFF1040 0.41 -0.8 357,711 + GFF1040 0.41 -1.4 357,711 + GFF1040 0.41 +0.1 357,711 + GFF1040 0.41 -0.4 357,712 - GFF1040 0.41 -0.2 357,834 + GFF1040 0.54 -1.5 357,834 + GFF1040 0.54 -1.5 357,834 + GFF1040 0.54 -0.5 357,834 + GFF1040 0.54 +1.1 357,834 + GFF1040 0.54 -0.4 357,834 + GFF1040 0.54 -0.1 357,835 - GFF1040 0.55 +0.3 357,835 - GFF1040 0.55 -0.6 357,835 - GFF1040 0.55 +0.6 357,835 - GFF1040 0.55 -0.4 357,835 - GFF1040 0.55 -1.0 357,835 - GFF1040 0.55 -0.2 358,155 + +1.6 358,155 + +0.1 358,155 + -0.9 358,155 + +0.2 358,156 - -0.5 358,156 - -0.4
Or see this region's nucleotide sequence