Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1025 and GFF1026 overlap by 4 nucleotides GFF1026 and GFF1027 are separated by 86 nucleotides GFF1027 and GFF1028 are separated by 15 nucleotides GFF1028 and GFF1029 are separated by 117 nucleotides
GFF1025 - Chromate transport protein ChrA, at 341,006 to 341,605
GFF1025
GFF1026 - Probable chromate transporter protein, at 341,602 to 342,168
GFF1026
GFF1027 - Ribonuclease BN, at 342,255 to 343,178
GFF1027
GFF1028 - FIG027190: Putative transmembrane protein, at 343,194 to 343,754
GFF1028
GFF1029 - CHRD domain containing protein, at 343,872 to 344,321
GFF1029
Position (kb) 342
343
344 Strain fitness (log2 ratio) -2
-1
0
1
2 at 341.265 kb on + strand, within GFF1025 at 341.265 kb on + strand, within GFF1025 at 341.265 kb on + strand, within GFF1025 at 341.265 kb on + strand, within GFF1025 at 341.265 kb on + strand, within GFF1025 at 341.266 kb on - strand, within GFF1025 at 341.266 kb on - strand, within GFF1025 at 341.266 kb on - strand, within GFF1025 at 341.266 kb on - strand, within GFF1025 at 341.266 kb on - strand, within GFF1025 at 341.454 kb on - strand, within GFF1025 at 341.493 kb on + strand, within GFF1025 at 341.494 kb on - strand, within GFF1025 at 341.494 kb on - strand, within GFF1025 at 341.556 kb on + strand at 341.556 kb on + strand at 341.556 kb on + strand at 341.556 kb on + strand at 341.556 kb on + strand at 341.556 kb on + strand at 341.556 kb on + strand at 341.556 kb on + strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.557 kb on - strand at 341.787 kb on + strand, within GFF1026 at 341.787 kb on + strand, within GFF1026 at 341.787 kb on + strand, within GFF1026 at 341.787 kb on + strand, within GFF1026 at 341.788 kb on - strand, within GFF1026 at 341.788 kb on - strand, within GFF1026 at 341.788 kb on - strand, within GFF1026 at 341.788 kb on - strand, within GFF1026 at 341.850 kb on - strand, within GFF1026 at 341.850 kb on - strand, within GFF1026 at 341.850 kb on - strand, within GFF1026 at 341.858 kb on + strand, within GFF1026 at 341.858 kb on + strand, within GFF1026 at 341.859 kb on - strand, within GFF1026 at 341.859 kb on - strand, within GFF1026 at 341.942 kb on + strand, within GFF1026 at 341.942 kb on + strand, within GFF1026 at 341.943 kb on - strand, within GFF1026 at 341.992 kb on + strand, within GFF1026 at 341.992 kb on + strand, within GFF1026 at 341.992 kb on + strand, within GFF1026 at 341.992 kb on + strand, within GFF1026 at 341.993 kb on - strand, within GFF1026 at 341.993 kb on - strand, within GFF1026 at 342.185 kb on - strand at 342.185 kb on - strand at 342.185 kb on - strand at 342.185 kb on - strand at 342.248 kb on + strand at 342.248 kb on + strand at 342.248 kb on + strand at 342.248 kb on + strand at 342.249 kb on - strand at 342.249 kb on - strand at 342.249 kb on - strand at 342.249 kb on - strand at 342.321 kb on + strand at 342.322 kb on - strand at 342.322 kb on - strand at 342.322 kb on - strand at 342.351 kb on + strand, within GFF1027 at 342.352 kb on - strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.354 kb on + strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.355 kb on - strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.858 kb on + strand, within GFF1027 at 342.859 kb on - strand, within GFF1027 at 342.859 kb on - strand, within GFF1027 at 342.859 kb on - strand, within GFF1027 at 342.859 kb on - strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.960 kb on + strand, within GFF1027 at 342.961 kb on - strand, within GFF1027 at 342.961 kb on - strand, within GFF1027 at 342.961 kb on - strand, within GFF1027 at 342.961 kb on - strand, within GFF1027 at 342.961 kb on - strand, within GFF1027 at 342.991 kb on - strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.032 kb on + strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.033 kb on - strand, within GFF1027 at 343.035 kb on + strand, within GFF1027 at 343.035 kb on + strand, within GFF1027 at 343.035 kb on + strand, within GFF1027 at 343.035 kb on + strand, within GFF1027 at 343.035 kb on + strand, within GFF1027 at 343.036 kb on - strand, within GFF1027 at 343.036 kb on - strand, within GFF1027 at 343.080 kb on + strand, within GFF1027 at 343.080 kb on + strand, within GFF1027 at 343.080 kb on + strand, within GFF1027 at 343.080 kb on + strand, within GFF1027 at 343.080 kb on + strand, within GFF1027 at 343.080 kb on + strand, within GFF1027 at 343.081 kb on - strand, within GFF1027 at 343.081 kb on - strand, within GFF1027 at 343.092 kb on + strand at 343.092 kb on + strand at 343.092 kb on + strand at 343.092 kb on + strand at 343.092 kb on + strand at 343.092 kb on + strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.093 kb on - strand at 343.405 kb on + strand, within GFF1028 at 343.405 kb on + strand, within GFF1028 at 343.405 kb on + strand, within GFF1028 at 343.406 kb on - strand, within GFF1028 at 343.406 kb on - strand, within GFF1028 at 343.406 kb on - strand, within GFF1028 at 343.406 kb on - strand, within GFF1028 at 343.406 kb on - strand, within GFF1028 at 343.833 kb on + strand at 343.833 kb on + strand at 343.833 kb on + strand at 343.833 kb on + strand at 343.834 kb on - strand at 343.834 kb on - strand at 343.834 kb on - strand at 343.864 kb on + strand at 343.864 kb on + strand at 343.864 kb on + strand at 343.865 kb on - strand at 343.865 kb on - strand at 343.865 kb on - strand at 343.865 kb on - strand at 343.865 kb on - strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.881 kb on + strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 343.882 kb on - strand at 344.076 kb on + strand, within GFF1029 at 344.076 kb on + strand, within GFF1029 at 344.076 kb on + strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.077 kb on - strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.088 kb on + strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029 at 344.089 kb on - strand, within GFF1029
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 341,265 + GFF1025 0.43 -1.0 341,265 + GFF1025 0.43 -0.8 341,265 + GFF1025 0.43 +0.3 341,265 + GFF1025 0.43 +0.3 341,265 + GFF1025 0.43 -1.2 341,266 - GFF1025 0.43 +0.6 341,266 - GFF1025 0.43 -2.2 341,266 - GFF1025 0.43 -0.5 341,266 - GFF1025 0.43 -0.2 341,266 - GFF1025 0.43 -0.9 341,454 - GFF1025 0.75 +0.6 341,493 + GFF1025 0.81 -0.5 341,494 - GFF1025 0.81 +0.6 341,494 - GFF1025 0.81 -1.4 341,556 + -0.4 341,556 + -2.6 341,556 + -0.3 341,556 + +0.8 341,556 + -0.2 341,556 + +1.1 341,556 + +0.0 341,556 + -0.3 341,557 - -0.4 341,557 - -1.2 341,557 - -0.2 341,557 - -0.1 341,557 - -0.1 341,557 - -0.7 341,557 - -0.1 341,557 - -0.4 341,787 + GFF1026 0.33 -0.4 341,787 + GFF1026 0.33 -0.0 341,787 + GFF1026 0.33 -0.2 341,787 + GFF1026 0.33 +0.1 341,788 - GFF1026 0.33 -0.9 341,788 - GFF1026 0.33 -0.2 341,788 - GFF1026 0.33 -0.8 341,788 - GFF1026 0.33 +0.3 341,850 - GFF1026 0.44 -0.3 341,850 - GFF1026 0.44 -0.1 341,850 - GFF1026 0.44 -1.1 341,858 + GFF1026 0.45 -0.8 341,858 + GFF1026 0.45 -0.7 341,859 - GFF1026 0.45 -0.2 341,859 - GFF1026 0.45 +1.3 341,942 + GFF1026 0.60 -0.6 341,942 + GFF1026 0.60 +0.6 341,943 - GFF1026 0.60 +0.6 341,992 + GFF1026 0.69 +0.6 341,992 + GFF1026 0.69 +0.0 341,992 + GFF1026 0.69 -0.1 341,992 + GFF1026 0.69 +0.9 341,993 - GFF1026 0.69 -0.1 341,993 - GFF1026 0.69 -0.2 342,185 - +0.3 342,185 - +1.4 342,185 - +1.4 342,185 - -0.1 342,248 + -0.8 342,248 + -1.4 342,248 + -0.2 342,248 + -0.5 342,249 - -0.2 342,249 - +1.6 342,249 - -0.2 342,249 - -0.5 342,321 + -0.7 342,322 - +0.3 342,322 - -0.4 342,322 - -0.2 342,351 + GFF1027 0.10 -2.1 342,352 - GFF1027 0.10 +0.2 342,354 + GFF1027 0.11 +0.1 342,354 + GFF1027 0.11 +0.3 342,354 + GFF1027 0.11 -0.7 342,354 + GFF1027 0.11 +2.1 342,354 + GFF1027 0.11 +0.3 342,354 + GFF1027 0.11 -0.2 342,354 + GFF1027 0.11 -1.8 342,354 + GFF1027 0.11 -1.5 342,355 - GFF1027 0.11 -0.5 342,355 - GFF1027 0.11 +0.1 342,355 - GFF1027 0.11 -0.7 342,355 - GFF1027 0.11 +0.6 342,355 - GFF1027 0.11 +0.9 342,355 - GFF1027 0.11 +0.3 342,355 - GFF1027 0.11 -0.5 342,858 + GFF1027 0.65 +0.2 342,858 + GFF1027 0.65 -0.5 342,858 + GFF1027 0.65 -0.4 342,858 + GFF1027 0.65 -0.4 342,858 + GFF1027 0.65 +1.6 342,858 + GFF1027 0.65 -0.5 342,858 + GFF1027 0.65 +0.1 342,859 - GFF1027 0.65 -0.6 342,859 - GFF1027 0.65 -0.8 342,859 - GFF1027 0.65 +0.1 342,859 - GFF1027 0.65 -0.4 342,960 + GFF1027 0.76 -1.5 342,960 + GFF1027 0.76 -2.1 342,960 + GFF1027 0.76 -0.1 342,960 + GFF1027 0.76 -0.3 342,960 + GFF1027 0.76 -1.5 342,960 + GFF1027 0.76 -1.1 342,960 + GFF1027 0.76 +1.0 342,961 - GFF1027 0.76 +0.9 342,961 - GFF1027 0.76 +1.2 342,961 - GFF1027 0.76 -1.5 342,961 - GFF1027 0.76 +0.1 342,961 - GFF1027 0.76 -0.6 342,991 - GFF1027 0.80 +0.1 343,032 + GFF1027 0.84 -0.1 343,032 + GFF1027 0.84 -1.5 343,032 + GFF1027 0.84 -0.3 343,032 + GFF1027 0.84 +0.9 343,032 + GFF1027 0.84 -0.4 343,032 + GFF1027 0.84 -1.2 343,032 + GFF1027 0.84 +2.1 343,032 + GFF1027 0.84 -0.4 343,033 - GFF1027 0.84 -0.8 343,033 - GFF1027 0.84 -0.7 343,033 - GFF1027 0.84 -0.4 343,033 - GFF1027 0.84 -0.1 343,033 - GFF1027 0.84 -0.7 343,033 - GFF1027 0.84 -0.0 343,033 - GFF1027 0.84 +1.1 343,033 - GFF1027 0.84 +0.4 343,033 - GFF1027 0.84 -0.4 343,033 - GFF1027 0.84 -1.2 343,033 - GFF1027 0.84 +0.1 343,033 - GFF1027 0.84 -0.9 343,033 - GFF1027 0.84 -0.5 343,035 + GFF1027 0.84 -0.2 343,035 + GFF1027 0.84 -0.4 343,035 + GFF1027 0.84 -0.4 343,035 + GFF1027 0.84 -0.2 343,035 + GFF1027 0.84 -0.7 343,036 - GFF1027 0.85 -0.5 343,036 - GFF1027 0.85 -0.6 343,080 + GFF1027 0.89 -0.5 343,080 + GFF1027 0.89 -0.7 343,080 + GFF1027 0.89 +1.4 343,080 + GFF1027 0.89 -1.1 343,080 + GFF1027 0.89 -1.2 343,080 + GFF1027 0.89 -0.3 343,081 - GFF1027 0.89 +0.1 343,081 - GFF1027 0.89 +1.2 343,092 + -1.0 343,092 + -0.2 343,092 + +0.2 343,092 + +0.9 343,092 + +0.1 343,092 + -0.2 343,093 - +0.0 343,093 - -0.4 343,093 - -0.2 343,093 - -0.5 343,093 - -0.6 343,093 - -0.3 343,093 - -0.9 343,093 - +0.1 343,093 - +0.2 343,093 - -0.1 343,093 - +0.2 343,093 - +0.2 343,405 + GFF1028 0.38 +0.5 343,405 + GFF1028 0.38 +0.4 343,405 + GFF1028 0.38 +0.3 343,406 - GFF1028 0.38 +0.4 343,406 - GFF1028 0.38 +0.8 343,406 - GFF1028 0.38 -0.2 343,406 - GFF1028 0.38 +1.2 343,406 - GFF1028 0.38 -0.6 343,833 + -1.7 343,833 + -0.3 343,833 + -1.6 343,833 + -0.7 343,834 - -1.4 343,834 - -0.2 343,834 - +0.6 343,864 + -1.5 343,864 + +0.1 343,864 + -0.2 343,865 - +1.2 343,865 - -0.7 343,865 - -0.2 343,865 - +1.3 343,865 - +0.1 343,881 + -1.1 343,881 + -1.7 343,881 + -0.2 343,881 + -0.9 343,881 + -1.1 343,881 + -0.5 343,881 + -0.8 343,881 + -1.2 343,882 - +0.5 343,882 - -0.9 343,882 - -0.4 343,882 - -0.4 343,882 - -0.1 343,882 - -0.2 343,882 - -1.4 343,882 - -0.4 343,882 - -0.3 343,882 - -0.2 343,882 - -0.3 344,076 + GFF1029 0.45 +0.0 344,076 + GFF1029 0.45 -1.6 344,076 + GFF1029 0.45 -0.5 344,077 - GFF1029 0.46 +2.1 344,077 - GFF1029 0.46 -2.1 344,077 - GFF1029 0.46 +0.3 344,077 - GFF1029 0.46 -0.2 344,077 - GFF1029 0.46 +0.6 344,077 - GFF1029 0.46 +2.0 344,077 - GFF1029 0.46 -0.5 344,077 - GFF1029 0.46 +0.8 344,077 - GFF1029 0.46 -0.3 344,077 - GFF1029 0.46 -0.2 344,088 + GFF1029 0.48 -1.4 344,088 + GFF1029 0.48 -0.9 344,088 + GFF1029 0.48 -0.7 344,088 + GFF1029 0.48 -0.6 344,088 + GFF1029 0.48 -0.7 344,089 - GFF1029 0.48 -1.1 344,089 - GFF1029 0.48 -0.5 344,089 - GFF1029 0.48 -1.8 344,089 - GFF1029 0.48 -0.4 344,089 - GFF1029 0.48 -1.3 344,089 - GFF1029 0.48 -0.6 344,089 - GFF1029 0.48 -1.1
Or see this region's nucleotide sequence