Strain Fitness in Variovorax sp. SCN45 around GFF1020

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1019 and GFF1020 are separated by 290 nucleotidesGFF1020 and GFF1021 are separated by 104 nucleotidesGFF1021 and GFF1022 are separated by 43 nucleotides GFF1019 - monooxygenase, FAD-binding, at 336,734 to 337,759 GFF1019 GFF1020 - hypothetical protein, at 338,050 to 338,220 GFF1020 GFF1021 - Transcriptional regulator, Xre-family with cupin domain, at 338,325 to 338,930 GFF1021 GFF1022 - Acetyltransferase, GNAT family, at 338,974 to 339,495 GFF1022 Position (kb) 338 339Strain fitness (log2 ratio) -2 -1 0 1 2at 337.254 kb on + strand, within GFF1019at 337.255 kb on - strand, within GFF1019at 337.255 kb on - strand, within GFF1019at 337.255 kb on - strand, within GFF1019at 337.255 kb on - strand, within GFF1019at 337.320 kb on + strand, within GFF1019at 337.320 kb on + strand, within GFF1019at 337.321 kb on - strand, within GFF1019at 337.379 kb on + strand, within GFF1019at 337.380 kb on - strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.620 kb on + strand, within GFF1019at 337.620 kb on + strand, within GFF1019at 337.621 kb on - strand, within GFF1019at 337.621 kb on - strand, within GFF1019at 337.621 kb on - strand, within GFF1019at 337.646 kb on + strand, within GFF1019at 337.646 kb on + strand, within GFF1019at 337.646 kb on + strand, within GFF1019at 337.646 kb on + strand, within GFF1019at 337.751 kb on + strandat 337.752 kb on - strandat 337.752 kb on - strandat 337.752 kb on - strandat 337.752 kb on - strandat 337.996 kb on + strandat 337.996 kb on + strandat 338.046 kb on + strandat 338.047 kb on - strandat 338.132 kb on + strand, within GFF1020at 338.132 kb on + strand, within GFF1020at 338.132 kb on + strand, within GFF1020at 338.132 kb on + strand, within GFF1020at 338.132 kb on + strand, within GFF1020at 338.133 kb on - strand, within GFF1020at 338.133 kb on - strand, within GFF1020at 338.133 kb on - strand, within GFF1020at 338.133 kb on - strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.188 kb on - strand, within GFF1020at 338.188 kb on - strand, within GFF1020at 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.205 kb on - strandat 338.205 kb on - strandat 338.205 kb on - strandat 338.205 kb on - strandat 338.254 kb on + strandat 338.255 kb on - strandat 338.255 kb on - strandat 338.255 kb on - strandat 338.315 kb on + strandat 338.316 kb on - strandat 338.327 kb on - strandat 338.449 kb on + strand, within GFF1021at 338.449 kb on + strand, within GFF1021at 338.450 kb on - strand, within GFF1021at 338.450 kb on - strand, within GFF1021at 338.450 kb on - strand, within GFF1021at 338.518 kb on + strand, within GFF1021at 338.519 kb on - strand, within GFF1021at 338.519 kb on - strand, within GFF1021at 338.605 kb on + strand, within GFF1021at 338.605 kb on + strand, within GFF1021at 338.605 kb on + strand, within GFF1021at 338.605 kb on + strand, within GFF1021at 338.606 kb on - strand, within GFF1021at 338.941 kb on + strandat 338.991 kb on + strandat 338.991 kb on + strandat 338.992 kb on - strandat 338.992 kb on - strandat 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.061 kb on + strand, within GFF1022at 339.062 kb on - strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.067 kb on + strand, within GFF1022at 339.068 kb on - strand, within GFF1022at 339.181 kb on + strand, within GFF1022at 339.181 kb on + strand, within GFF1022at 339.181 kb on + strand, within GFF1022at 339.181 kb on + strand, within GFF1022at 339.182 kb on - strand, within GFF1022at 339.208 kb on + strand, within GFF1022at 339.209 kb on - strand, within GFF1022at 339.209 kb on - strand, within GFF1022at 339.209 kb on - strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.214 kb on + strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022at 339.215 kb on - strand, within GFF1022

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
337,254 + GFF1019 0.51 -0.6
337,255 - GFF1019 0.51 +0.4
337,255 - GFF1019 0.51 +0.9
337,255 - GFF1019 0.51 +0.1
337,255 - GFF1019 0.51 +0.2
337,320 + GFF1019 0.57 -0.4
337,320 + GFF1019 0.57 -0.7
337,321 - GFF1019 0.57 -0.4
337,379 + GFF1019 0.63 -0.1
337,380 - GFF1019 0.63 -0.9
337,413 + GFF1019 0.66 -1.4
337,413 + GFF1019 0.66 -0.4
337,413 + GFF1019 0.66 +0.2
337,413 + GFF1019 0.66 +0.5
337,413 + GFF1019 0.66 -0.8
337,414 - GFF1019 0.66 +0.5
337,414 - GFF1019 0.66 -0.4
337,414 - GFF1019 0.66 +0.6
337,414 - GFF1019 0.66 -0.7
337,414 - GFF1019 0.66 -0.1
337,414 - GFF1019 0.66 +0.2
337,414 - GFF1019 0.66 +1.3
337,414 - GFF1019 0.66 +0.0
337,620 + GFF1019 0.86 +2.1
337,620 + GFF1019 0.86 +0.4
337,621 - GFF1019 0.86 +0.3
337,621 - GFF1019 0.86 +2.1
337,621 - GFF1019 0.86 -0.6
337,646 + GFF1019 0.89 -0.2
337,646 + GFF1019 0.89 -0.4
337,646 + GFF1019 0.89 -0.2
337,646 + GFF1019 0.89 -0.4
337,751 + -0.7
337,752 - -0.1
337,752 - -0.8
337,752 - -0.2
337,752 - +0.4
337,996 + -0.0
337,996 + -0.4
338,046 + +0.0
338,047 - -1.0
338,132 + GFF1020 0.48 -1.0
338,132 + GFF1020 0.48 -0.3
338,132 + GFF1020 0.48 -0.6
338,132 + GFF1020 0.48 -0.1
338,132 + GFF1020 0.48 +0.2
338,133 - GFF1020 0.49 -0.4
338,133 - GFF1020 0.49 -1.3
338,133 - GFF1020 0.49 -0.1
338,133 - GFF1020 0.49 +0.1
338,187 + GFF1020 0.80 -1.2
338,187 + GFF1020 0.80 -0.6
338,187 + GFF1020 0.80 +0.6
338,187 + GFF1020 0.80 +0.9
338,187 + GFF1020 0.80 +0.5
338,187 + GFF1020 0.80 -1.4
338,187 + GFF1020 0.80 -0.9
338,188 - GFF1020 0.81 +0.1
338,188 - GFF1020 0.81 -0.7
338,204 + -1.7
338,204 + -0.9
338,204 + -0.4
338,204 + -2.0
338,204 + +0.1
338,204 + +0.2
338,204 + -0.7
338,205 - -0.8
338,205 - -0.4
338,205 - -0.4
338,205 - -0.3
338,254 + -1.2
338,255 - +0.1
338,255 - +0.1
338,255 - +0.3
338,315 + +0.4
338,316 - -0.7
338,327 - -0.4
338,449 + GFF1021 0.20 +0.5
338,449 + GFF1021 0.20 -0.3
338,450 - GFF1021 0.21 +0.3
338,450 - GFF1021 0.21 -0.2
338,450 - GFF1021 0.21 -0.5
338,518 + GFF1021 0.32 +0.7
338,519 - GFF1021 0.32 -0.4
338,519 - GFF1021 0.32 +0.5
338,605 + GFF1021 0.46 +0.2
338,605 + GFF1021 0.46 -0.6
338,605 + GFF1021 0.46 +0.9
338,605 + GFF1021 0.46 -0.3
338,606 - GFF1021 0.46 -0.0
338,941 + +0.4
338,991 + -0.5
338,991 + -0.0
338,992 - +0.1
338,992 - +0.4
339,061 + GFF1022 0.17 -0.6
339,061 + GFF1022 0.17 -0.0
339,061 + GFF1022 0.17 -0.6
339,061 + GFF1022 0.17 -1.9
339,061 + GFF1022 0.17 +0.2
339,061 + GFF1022 0.17 +0.3
339,062 - GFF1022 0.17 +1.6
339,067 + GFF1022 0.18 +0.1
339,067 + GFF1022 0.18 -2.2
339,067 + GFF1022 0.18 +0.3
339,067 + GFF1022 0.18 -0.9
339,067 + GFF1022 0.18 -0.9
339,068 - GFF1022 0.18 +0.1
339,181 + GFF1022 0.40 -1.2
339,181 + GFF1022 0.40 -0.6
339,181 + GFF1022 0.40 -0.7
339,181 + GFF1022 0.40 -0.5
339,182 - GFF1022 0.40 +0.4
339,208 + GFF1022 0.45 -0.4
339,209 - GFF1022 0.45 -1.6
339,209 - GFF1022 0.45 -0.7
339,209 - GFF1022 0.45 -0.6
339,214 + GFF1022 0.46 -0.5
339,214 + GFF1022 0.46 -0.0
339,214 + GFF1022 0.46 -0.1
339,214 + GFF1022 0.46 -1.4
339,214 + GFF1022 0.46 +0.1
339,214 + GFF1022 0.46 -0.4
339,214 + GFF1022 0.46 +1.1
339,214 + GFF1022 0.46 +0.4
339,215 - GFF1022 0.46 -0.2
339,215 - GFF1022 0.46 -0.7
339,215 - GFF1022 0.46 -1.8
339,215 - GFF1022 0.46 +0.1
339,215 - GFF1022 0.46 +2.6
339,215 - GFF1022 0.46 +0.1
339,215 - GFF1022 0.46 -0.7
339,215 - GFF1022 0.46 -0.1
339,215 - GFF1022 0.46 -0.5
339,215 - GFF1022 0.46 -0.8
339,215 - GFF1022 0.46 +0.3
339,215 - GFF1022 0.46 -1.3
339,215 - GFF1022 0.46 +0.7

Or see this region's nucleotide sequence