Strain Fitness in Variovorax sp. SCN45 around GFF1017

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1015 and GFF1016 are separated by 68 nucleotidesGFF1016 and GFF1017 are separated by 4 nucleotidesGFF1017 and GFF1018 are separated by 33 nucleotidesGFF1018 and GFF1019 are separated by 7 nucleotides GFF1015 - ABC-type antimicrobial peptide transport system, ATPase component, at 333,703 to 334,413 GFF1015 GFF1016 - no description, at 334,482 to 334,961 GFF1016 GFF1017 - conserved hypothetical protein-transmembrane prediction, at 334,966 to 335,946 GFF1017 GFF1018 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase (EC 2.1.1.185), at 335,980 to 336,726 GFF1018 GFF1019 - monooxygenase, FAD-binding, at 336,734 to 337,759 GFF1019 Position (kb) 334 335 336Strain fitness (log2 ratio) -2 -1 0 1 2at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.299 kb on + strand, within GFF1015at 334.300 kb on - strand, within GFF1015at 334.300 kb on - strand, within GFF1015at 334.383 kb on + strandat 334.383 kb on + strandat 334.383 kb on + strandat 334.383 kb on + strandat 334.400 kb on + strandat 334.423 kb on + strandat 334.428 kb on + strandat 334.448 kb on + strandat 334.449 kb on - strandat 334.452 kb on + strandat 334.452 kb on + strandat 334.459 kb on + strandat 334.459 kb on + strandat 334.459 kb on + strandat 334.460 kb on - strandat 334.460 kb on - strandat 334.461 kb on + strandat 334.461 kb on + strandat 334.461 kb on + strandat 334.462 kb on - strandat 334.465 kb on + strandat 334.465 kb on + strandat 334.465 kb on + strandat 334.466 kb on - strandat 334.466 kb on - strandat 334.605 kb on + strand, within GFF1016at 334.606 kb on - strand, within GFF1016at 334.606 kb on - strand, within GFF1016at 334.787 kb on + strand, within GFF1016at 334.838 kb on - strand, within GFF1016at 334.838 kb on - strand, within GFF1016at 334.838 kb on - strand, within GFF1016at 334.887 kb on + strand, within GFF1016at 334.887 kb on + strand, within GFF1016at 335.161 kb on + strand, within GFF1017at 335.161 kb on + strand, within GFF1017at 335.162 kb on - strand, within GFF1017at 335.162 kb on - strand, within GFF1017at 335.162 kb on - strand, within GFF1017at 335.240 kb on - strand, within GFF1017at 335.333 kb on + strand, within GFF1017at 335.545 kb on + strand, within GFF1017at 335.545 kb on + strand, within GFF1017at 335.546 kb on - strand, within GFF1017at 335.546 kb on - strand, within GFF1017at 335.546 kb on - strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.650 kb on + strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.651 kb on - strand, within GFF1017at 335.891 kb on + strandat 335.892 kb on - strandat 335.965 kb on - strandat 335.965 kb on - strandat 335.965 kb on - strandat 335.970 kb on + strandat 335.971 kb on - strandat 336.042 kb on + strandat 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.534 kb on + strand, within GFF1018at 336.534 kb on + strand, within GFF1018at 336.534 kb on + strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.539 kb on - strand, within GFF1018at 336.539 kb on - strand, within GFF1018at 336.697 kb on + strandat 336.697 kb on + strandat 336.697 kb on + strandat 336.698 kb on - strandat 336.698 kb on - strandat 336.735 kb on + strandat 336.735 kb on + strandat 336.735 kb on + strandat 336.736 kb on - strandat 336.736 kb on - strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.778 kb on - strandat 336.778 kb on - strandat 336.778 kb on - strandat 336.778 kb on - strandat 336.894 kb on + strand, within GFF1019at 336.895 kb on - strand, within GFF1019at 336.895 kb on - strand, within GFF1019at 336.895 kb on - strand, within GFF1019

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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334,299 + GFF1015 0.84 +0.5
334,299 + GFF1015 0.84 -0.2
334,299 + GFF1015 0.84 -0.7
334,299 + GFF1015 0.84 -0.1
334,299 + GFF1015 0.84 -0.8
334,299 + GFF1015 0.84 +0.4
334,299 + GFF1015 0.84 +0.1
334,299 + GFF1015 0.84 -0.1
334,299 + GFF1015 0.84 -0.0
334,299 + GFF1015 0.84 -0.0
334,300 - GFF1015 0.84 +0.5
334,300 - GFF1015 0.84 -1.0
334,383 + -0.6
334,383 + +0.6
334,383 + -1.7
334,383 + -0.1
334,400 + +0.2
334,423 + +0.1
334,428 + -0.3
334,448 + -0.2
334,449 - -0.3
334,452 + +0.5
334,452 + -0.5
334,459 + -0.3
334,459 + -0.5
334,459 + -1.2
334,460 - -0.6
334,460 - -0.9
334,461 + +0.1
334,461 + -0.3
334,461 + -0.4
334,462 - -0.1
334,465 + -0.8
334,465 + +0.3
334,465 + -0.1
334,466 - -1.5
334,466 - +0.2
334,605 + GFF1016 0.26 -0.2
334,606 - GFF1016 0.26 +0.8
334,606 - GFF1016 0.26 +0.2
334,787 + GFF1016 0.64 -0.6
334,838 - GFF1016 0.74 +0.2
334,838 - GFF1016 0.74 -0.9
334,838 - GFF1016 0.74 -0.3
334,887 + GFF1016 0.84 +0.1
334,887 + GFF1016 0.84 +1.1
335,161 + GFF1017 0.20 +0.6
335,161 + GFF1017 0.20 -0.2
335,162 - GFF1017 0.20 -1.1
335,162 - GFF1017 0.20 -0.9
335,162 - GFF1017 0.20 +0.5
335,240 - GFF1017 0.28 -0.5
335,333 + GFF1017 0.37 -2.1
335,545 + GFF1017 0.59 +1.6
335,545 + GFF1017 0.59 -0.4
335,546 - GFF1017 0.59 -0.1
335,546 - GFF1017 0.59 +1.2
335,546 - GFF1017 0.59 -0.7
335,650 + GFF1017 0.70 -0.7
335,650 + GFF1017 0.70 -0.2
335,650 + GFF1017 0.70 -0.8
335,650 + GFF1017 0.70 +0.1
335,650 + GFF1017 0.70 +0.1
335,651 - GFF1017 0.70 -1.7
335,651 - GFF1017 0.70 -0.7
335,651 - GFF1017 0.70 -0.8
335,651 - GFF1017 0.70 -1.5
335,651 - GFF1017 0.70 +1.4
335,651 - GFF1017 0.70 -0.9
335,651 - GFF1017 0.70 -0.8
335,891 + -0.7
335,892 - +0.5
335,965 - -0.4
335,965 - +2.5
335,965 - +0.4
335,970 + -1.2
335,971 - -1.8
336,042 + +0.3
336,442 + GFF1018 0.62 -0.9
336,442 + GFF1018 0.62 -1.7
336,442 + GFF1018 0.62 +0.2
336,442 + GFF1018 0.62 -0.7
336,442 + GFF1018 0.62 -1.5
336,442 + GFF1018 0.62 -1.2
336,443 - GFF1018 0.62 +0.5
336,443 - GFF1018 0.62 +0.6
336,443 - GFF1018 0.62 -1.5
336,443 - GFF1018 0.62 -0.5
336,443 - GFF1018 0.62 +0.8
336,534 + GFF1018 0.74 -0.1
336,534 + GFF1018 0.74 +0.3
336,534 + GFF1018 0.74 -1.1
336,535 - GFF1018 0.74 +0.9
336,535 - GFF1018 0.74 -0.9
336,535 - GFF1018 0.74 +0.2
336,535 - GFF1018 0.74 -0.8
336,535 - GFF1018 0.74 +0.1
336,535 - GFF1018 0.74 -0.5
336,535 - GFF1018 0.74 +0.6
336,535 - GFF1018 0.74 +1.2
336,538 + GFF1018 0.75 +0.6
336,538 + GFF1018 0.75 -0.5
336,538 + GFF1018 0.75 -0.6
336,538 + GFF1018 0.75 +0.6
336,538 + GFF1018 0.75 +0.6
336,538 + GFF1018 0.75 +0.5
336,538 + GFF1018 0.75 -0.7
336,538 + GFF1018 0.75 -1.2
336,538 + GFF1018 0.75 -1.9
336,539 - GFF1018 0.75 +0.2
336,539 - GFF1018 0.75 -0.3
336,697 + -0.2
336,697 + +0.5
336,697 + +0.9
336,698 - +0.1
336,698 - -1.4
336,735 + +0.5
336,735 + -0.8
336,735 + -0.2
336,736 - +0.9
336,736 - +1.6
336,777 + -0.7
336,777 + -0.4
336,777 + -0.7
336,777 + -0.7
336,777 + +0.1
336,777 + +0.2
336,777 + -0.6
336,778 - +0.1
336,778 - -0.1
336,778 - -0.7
336,778 - -0.6
336,894 + GFF1019 0.16 +2.0
336,895 - GFF1019 0.16 -0.1
336,895 - GFF1019 0.16 +0.4
336,895 - GFF1019 0.16 -0.7

Or see this region's nucleotide sequence