Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF988 and GFF989 are separated by 130 nucleotides GFF989 and GFF990 overlap by 4 nucleotides GFF990 and GFF991 are separated by 152 nucleotides GFF991 and GFF992 are separated by 21 nucleotides
GFF988 - LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23), at 306,603 to 307,601
GFF988
GFF989 - Segregation and condensation protein B, at 307,732 to 308,598
GFF989
GFF990 - LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22), at 308,595 to 310,394
GFF990
GFF991 - Nucleoside diphosphate kinase (EC 2.7.4.6), at 310,547 to 310,972
GFF991
GFF992 - 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192), at 310,994 to 312,142
GFF992
Position (kb) 308
309
310
311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.671 kb on - strand at 307.671 kb on - strand at 308.788 kb on - strand, within GFF990 at 308.961 kb on + strand, within GFF990 at 308.961 kb on + strand, within GFF990 at 308.962 kb on - strand, within GFF990 at 308.962 kb on - strand, within GFF990 at 308.962 kb on - strand, within GFF990 at 308.962 kb on - strand, within GFF990 at 309.303 kb on + strand, within GFF990 at 309.304 kb on - strand, within GFF990 at 309.378 kb on + strand, within GFF990 at 309.378 kb on + strand, within GFF990 at 309.379 kb on - strand, within GFF990 at 309.583 kb on - strand, within GFF990 at 309.583 kb on - strand, within GFF990 at 310.266 kb on + strand at 310.266 kb on + strand at 310.266 kb on + strand at 310.266 kb on + strand at 310.266 kb on + strand at 310.266 kb on + strand at 310.267 kb on - strand at 310.267 kb on - strand at 310.267 kb on - strand at 310.267 kb on - strand at 310.267 kb on - strand at 310.480 kb on + strand at 310.480 kb on + strand at 310.961 kb on + strand at 310.961 kb on + strand at 310.961 kb on + strand at 310.962 kb on - strand at 310.978 kb on + strand at 310.978 kb on + strand at 310.978 kb on + strand at 310.978 kb on + strand at 310.978 kb on + strand at 310.978 kb on + strand at 310.978 kb on + strand at 310.979 kb on - strand at 310.979 kb on - strand at 310.979 kb on - strand at 310.979 kb on - strand at 311.274 kb on + strand, within GFF992 at 311.274 kb on + strand, within GFF992 at 311.274 kb on + strand, within GFF992 at 311.275 kb on - strand, within GFF992 at 311.275 kb on - strand, within GFF992 at 311.275 kb on - strand, within GFF992 at 311.275 kb on - strand, within GFF992
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 307,670 + +0.1 307,670 + +0.1 307,670 + +0.5 307,670 + +1.6 307,670 + -0.3 307,670 + +0.0 307,670 + +1.0 307,670 + +0.8 307,670 + +0.8 307,670 + +0.1 307,671 - -1.0 307,671 - -0.5 308,788 - GFF990 0.11 +0.2 308,961 + GFF990 0.20 +0.2 308,961 + GFF990 0.20 -2.5 308,962 - GFF990 0.20 +0.0 308,962 - GFF990 0.20 -0.6 308,962 - GFF990 0.20 -2.5 308,962 - GFF990 0.20 -2.1 309,303 + GFF990 0.39 -2.0 309,304 - GFF990 0.39 +0.4 309,378 + GFF990 0.43 +0.2 309,378 + GFF990 0.43 -1.1 309,379 - GFF990 0.44 -1.0 309,583 - GFF990 0.55 +0.3 309,583 - GFF990 0.55 -0.5 310,266 + -0.6 310,266 + -0.7 310,266 + -1.8 310,266 + +0.5 310,266 + -1.5 310,266 + +0.0 310,267 - +0.3 310,267 - -1.5 310,267 - +0.2 310,267 - -1.0 310,267 - -0.6 310,480 + -0.7 310,480 + +0.2 310,961 + -1.3 310,961 + -0.5 310,961 + -0.9 310,962 - -0.7 310,978 + -0.3 310,978 + -1.1 310,978 + -0.8 310,978 + -0.6 310,978 + +0.9 310,978 + -1.0 310,978 + -0.3 310,979 - -0.5 310,979 - -1.5 310,979 - -0.3 310,979 - -1.2 311,274 + GFF992 0.24 -0.7 311,274 + GFF992 0.24 +2.0 311,274 + GFF992 0.24 -0.3 311,275 - GFF992 0.24 +0.2 311,275 - GFF992 0.24 +1.6 311,275 - GFF992 0.24 -1.2 311,275 - GFF992 0.24 -0.7
Or see this region's nucleotide sequence