Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF908 and GFF909 are separated by 18 nucleotides GFF909 and GFF910 are separated by 16 nucleotides
GFF908 - Putative oxidoreductase, at 218,525 to 219,535
GFF908
GFF909 - Alcohol dehydrogenase (EC 1.1.1.1), at 219,554 to 220,609
GFF909
GFF910 - hypothetical protein, at 220,626 to 222,359
GFF910
Position (kb) 219
220
221 Strain fitness (log2 ratio) -1
0
1 at 218.681 kb on + strand, within GFF908 at 218.681 kb on + strand, within GFF908 at 218.681 kb on + strand, within GFF908 at 218.682 kb on - strand, within GFF908 at 218.682 kb on - strand, within GFF908 at 218.682 kb on - strand, within GFF908 at 218.682 kb on - strand, within GFF908 at 218.682 kb on - strand, within GFF908 at 218.682 kb on - strand, within GFF908 at 218.864 kb on + strand, within GFF908 at 218.864 kb on + strand, within GFF908 at 218.879 kb on + strand, within GFF908 at 218.879 kb on + strand, within GFF908 at 218.879 kb on + strand, within GFF908 at 218.880 kb on - strand, within GFF908 at 218.880 kb on - strand, within GFF908 at 218.880 kb on - strand, within GFF908 at 218.880 kb on - strand, within GFF908 at 218.880 kb on - strand, within GFF908 at 218.880 kb on - strand, within GFF908 at 219.062 kb on + strand, within GFF908 at 219.062 kb on + strand, within GFF908 at 219.062 kb on + strand, within GFF908 at 219.173 kb on + strand, within GFF908 at 219.173 kb on + strand, within GFF908 at 219.401 kb on + strand, within GFF908 at 219.401 kb on + strand, within GFF908 at 219.401 kb on + strand, within GFF908 at 219.401 kb on + strand, within GFF908 at 219.402 kb on - strand, within GFF908 at 219.402 kb on - strand, within GFF908 at 219.402 kb on - strand, within GFF908 at 219.402 kb on - strand, within GFF908 at 219.402 kb on - strand, within GFF908 at 219.402 kb on - strand, within GFF908 at 219.572 kb on + strand at 219.662 kb on + strand, within GFF909 at 219.662 kb on + strand, within GFF909 at 219.663 kb on - strand, within GFF909 at 219.663 kb on - strand, within GFF909 at 219.663 kb on - strand, within GFF909 at 219.722 kb on + strand, within GFF909 at 219.722 kb on + strand, within GFF909 at 219.722 kb on + strand, within GFF909 at 219.899 kb on + strand, within GFF909 at 219.899 kb on + strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 219.900 kb on - strand, within GFF909 at 220.049 kb on + strand, within GFF909 at 220.049 kb on + strand, within GFF909 at 220.050 kb on - strand, within GFF909 at 220.542 kb on - strand at 220.542 kb on - strand at 220.628 kb on - strand at 220.628 kb on - strand at 220.628 kb on - strand at 220.664 kb on - strand at 220.720 kb on + strand at 220.720 kb on + strand at 220.720 kb on + strand at 220.720 kb on + strand at 220.720 kb on + strand at 220.721 kb on - strand at 220.721 kb on - strand at 220.721 kb on - strand at 221.129 kb on - strand, within GFF910 at 221.584 kb on + strand, within GFF910 at 221.585 kb on - strand, within GFF910 at 221.585 kb on - strand, within GFF910
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 218,681 + GFF908 0.15 -0.1 218,681 + GFF908 0.15 -0.2 218,681 + GFF908 0.15 -1.2 218,682 - GFF908 0.16 +0.3 218,682 - GFF908 0.16 -0.6 218,682 - GFF908 0.16 +0.9 218,682 - GFF908 0.16 -1.0 218,682 - GFF908 0.16 -0.2 218,682 - GFF908 0.16 +0.1 218,864 + GFF908 0.34 +0.4 218,864 + GFF908 0.34 -0.7 218,879 + GFF908 0.35 +1.4 218,879 + GFF908 0.35 -0.2 218,879 + GFF908 0.35 -0.0 218,880 - GFF908 0.35 +0.6 218,880 - GFF908 0.35 -0.1 218,880 - GFF908 0.35 +0.4 218,880 - GFF908 0.35 +0.3 218,880 - GFF908 0.35 -0.9 218,880 - GFF908 0.35 -0.7 219,062 + GFF908 0.53 +0.2 219,062 + GFF908 0.53 +0.5 219,062 + GFF908 0.53 +0.5 219,173 + GFF908 0.64 +0.2 219,173 + GFF908 0.64 -0.6 219,401 + GFF908 0.87 -0.4 219,401 + GFF908 0.87 -0.6 219,401 + GFF908 0.87 +0.1 219,401 + GFF908 0.87 -0.5 219,402 - GFF908 0.87 +0.5 219,402 - GFF908 0.87 -0.3 219,402 - GFF908 0.87 -0.5 219,402 - GFF908 0.87 -0.4 219,402 - GFF908 0.87 +0.6 219,402 - GFF908 0.87 -0.7 219,572 + -0.6 219,662 + GFF909 0.10 +0.2 219,662 + GFF909 0.10 +0.2 219,663 - GFF909 0.10 +0.1 219,663 - GFF909 0.10 +0.1 219,663 - GFF909 0.10 +1.4 219,722 + GFF909 0.16 +1.5 219,722 + GFF909 0.16 -0.2 219,722 + GFF909 0.16 +0.6 219,899 + GFF909 0.33 +0.3 219,899 + GFF909 0.33 -0.6 219,900 - GFF909 0.33 +0.4 219,900 - GFF909 0.33 -1.4 219,900 - GFF909 0.33 -0.1 219,900 - GFF909 0.33 -0.2 219,900 - GFF909 0.33 -1.1 219,900 - GFF909 0.33 -0.0 219,900 - GFF909 0.33 -1.0 220,049 + GFF909 0.47 +0.6 220,049 + GFF909 0.47 +1.5 220,050 - GFF909 0.47 +0.7 220,542 - -0.7 220,542 - -0.7 220,628 - -0.1 220,628 - +0.1 220,628 - +0.8 220,664 - -0.0 220,720 + -0.5 220,720 + -0.7 220,720 + -0.2 220,720 + +0.6 220,720 + -0.7 220,721 - -0.5 220,721 - -0.1 220,721 - +0.9 221,129 - GFF910 0.29 +0.1 221,584 + GFF910 0.55 -0.2 221,585 - GFF910 0.55 -0.4 221,585 - GFF910 0.55 -0.9
Or see this region's nucleotide sequence