Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF879 and GFF880 are separated by 45 nucleotides GFF880 and GFF881 are separated by 47 nucleotides GFF881 and GFF882 overlap by 13 nucleotides
GFF879 - BUG/TctC family periplasmic protein, at 188,229 to 189,305
GFF879
GFF880 - conserved hypothetical protein, at 189,351 to 190,094
GFF880
GFF881 - Transcriptional regulator ligR, LysR family, at 190,142 to 191,065
GFF881
GFF882 - Outer membrane porin, at 191,053 to 192,117
GFF882
Position (kb) 190
191
192 Strain fitness (log2 ratio) -2
-1
0
1
2 at 189.393 kb on + strand at 189.393 kb on + strand at 189.393 kb on + strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.394 kb on - strand at 189.419 kb on + strand at 189.419 kb on + strand at 189.419 kb on + strand at 189.420 kb on - strand at 189.582 kb on + strand, within GFF880 at 189.583 kb on - strand, within GFF880 at 189.583 kb on - strand, within GFF880 at 189.583 kb on - strand, within GFF880 at 189.652 kb on - strand, within GFF880 at 189.652 kb on - strand, within GFF880 at 189.840 kb on + strand, within GFF880 at 189.882 kb on + strand, within GFF880 at 189.882 kb on + strand, within GFF880 at 189.882 kb on + strand, within GFF880 at 190.074 kb on - strand at 190.102 kb on - strand at 190.102 kb on - strand at 190.163 kb on + strand at 190.163 kb on + strand at 190.164 kb on - strand at 190.164 kb on - strand at 190.164 kb on - strand at 190.164 kb on - strand at 190.580 kb on + strand, within GFF881 at 190.580 kb on + strand, within GFF881 at 190.581 kb on - strand, within GFF881 at 191.034 kb on - strand at 191.034 kb on - strand at 191.034 kb on - strand at 191.123 kb on + strand at 191.123 kb on + strand at 191.166 kb on - strand, within GFF882 at 191.336 kb on + strand, within GFF882 at 191.528 kb on + strand, within GFF882 at 191.529 kb on - strand, within GFF882 at 191.570 kb on + strand, within GFF882 at 191.570 kb on + strand, within GFF882 at 191.570 kb on + strand, within GFF882 at 191.571 kb on - strand, within GFF882 at 191.571 kb on - strand, within GFF882 at 191.618 kb on + strand, within GFF882 at 191.618 kb on + strand, within GFF882 at 191.777 kb on + strand, within GFF882 at 191.777 kb on + strand, within GFF882 at 191.778 kb on - strand, within GFF882 at 191.892 kb on - strand, within GFF882 at 191.984 kb on + strand, within GFF882
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 189,393 + -1.0 189,393 + -0.5 189,393 + +0.0 189,394 - -0.4 189,394 - +0.5 189,394 - -0.4 189,394 - -0.4 189,394 - -1.2 189,394 - +0.3 189,394 - -0.2 189,394 - -1.1 189,419 + +0.5 189,419 + -1.2 189,419 + +1.2 189,420 - -0.0 189,582 + GFF880 0.31 -0.3 189,583 - GFF880 0.31 -0.5 189,583 - GFF880 0.31 +1.2 189,583 - GFF880 0.31 +0.3 189,652 - GFF880 0.40 -1.5 189,652 - GFF880 0.40 +0.9 189,840 + GFF880 0.66 -0.4 189,882 + GFF880 0.71 +0.0 189,882 + GFF880 0.71 +0.9 189,882 + GFF880 0.71 +0.8 190,074 - +0.4 190,102 - -1.1 190,102 - +0.2 190,163 + -0.7 190,163 + +1.4 190,164 - +0.0 190,164 - +0.5 190,164 - +2.0 190,164 - +1.0 190,580 + GFF881 0.47 -0.9 190,580 + GFF881 0.47 -0.7 190,581 - GFF881 0.48 +0.3 191,034 - +0.0 191,034 - -0.7 191,034 - +0.6 191,123 + -0.7 191,123 + -0.2 191,166 - GFF882 0.11 -0.1 191,336 + GFF882 0.27 -0.4 191,528 + GFF882 0.45 -2.4 191,529 - GFF882 0.45 -0.4 191,570 + GFF882 0.49 -0.5 191,570 + GFF882 0.49 -0.2 191,570 + GFF882 0.49 +0.5 191,571 - GFF882 0.49 -0.2 191,571 - GFF882 0.49 -0.7 191,618 + GFF882 0.53 +0.2 191,618 + GFF882 0.53 -0.3 191,777 + GFF882 0.68 +0.3 191,777 + GFF882 0.68 +0.2 191,778 - GFF882 0.68 +0.8 191,892 - GFF882 0.79 +0.2 191,984 + GFF882 0.87 +0.5
Or see this region's nucleotide sequence