Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF829 and GFF830 overlap by 4 nucleotides GFF830 and GFF831 are separated by 224 nucleotides GFF831 and GFF832 are separated by 42 nucleotides
GFF829 - Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2), at 133,061 to 136,879
GFF829
GFF830 - ChlI component of cobalt chelatase involved in B12 biosynthesis, at 136,876 to 137,943
GFF830
GFF831 - ChlD component of cobalt chelatase involved in B12 biosynthesis, at 138,168 to 138,581
GFF831
GFF832 - hypothetical protein, at 138,624 to 138,956
GFF832
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1 at 136.187 kb on + strand, within GFF829 at 136.188 kb on - strand, within GFF829 at 136.188 kb on - strand, within GFF829 at 136.188 kb on - strand, within GFF829 at 136.256 kb on + strand, within GFF829 at 136.256 kb on + strand, within GFF829 at 136.257 kb on - strand, within GFF829 at 136.257 kb on - strand, within GFF829 at 136.257 kb on - strand, within GFF829 at 136.280 kb on + strand, within GFF829 at 136.400 kb on + strand, within GFF829 at 136.401 kb on - strand, within GFF829 at 136.401 kb on - strand, within GFF829 at 136.401 kb on - strand, within GFF829 at 136.401 kb on - strand, within GFF829 at 136.401 kb on - strand, within GFF829 at 136.401 kb on - strand, within GFF829 at 136.403 kb on + strand, within GFF829 at 136.403 kb on + strand, within GFF829 at 136.403 kb on + strand, within GFF829 at 136.403 kb on + strand, within GFF829 at 136.404 kb on - strand, within GFF829 at 136.404 kb on - strand, within GFF829 at 136.404 kb on - strand, within GFF829 at 136.404 kb on - strand, within GFF829 at 136.466 kb on + strand, within GFF829 at 136.466 kb on + strand, within GFF829 at 136.466 kb on + strand, within GFF829 at 136.466 kb on + strand, within GFF829 at 136.466 kb on + strand, within GFF829 at 136.466 kb on + strand, within GFF829 at 136.466 kb on + strand, within GFF829 at 136.466 kb on + strand, within GFF829 at 136.466 kb on + strand, within GFF829 at 136.467 kb on - strand, within GFF829 at 136.467 kb on - strand, within GFF829 at 136.467 kb on - strand, within GFF829 at 136.467 kb on - strand, within GFF829 at 136.467 kb on - strand, within GFF829 at 136.467 kb on - strand, within GFF829 at 136.467 kb on - strand, within GFF829 at 136.467 kb on - strand, within GFF829 at 136.589 kb on + strand at 136.589 kb on + strand at 136.590 kb on - strand at 136.625 kb on + strand at 136.625 kb on + strand at 136.673 kb on + strand at 136.674 kb on - strand at 136.694 kb on + strand at 136.694 kb on + strand at 136.695 kb on - strand at 136.695 kb on - strand at 136.695 kb on - strand at 136.695 kb on - strand at 136.815 kb on - strand at 136.909 kb on - strand at 137.194 kb on + strand, within GFF830 at 137.194 kb on + strand, within GFF830 at 137.194 kb on + strand, within GFF830 at 137.195 kb on - strand, within GFF830 at 137.195 kb on - strand, within GFF830 at 137.195 kb on - strand, within GFF830 at 137.560 kb on + strand, within GFF830 at 137.560 kb on + strand, within GFF830 at 138.231 kb on + strand, within GFF831 at 138.231 kb on + strand, within GFF831 at 138.231 kb on + strand, within GFF831 at 138.231 kb on + strand, within GFF831 at 138.232 kb on - strand, within GFF831 at 138.568 kb on - strand at 138.579 kb on + strand at 138.580 kb on - strand at 138.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 136,187 + GFF829 0.82 -0.4 136,188 - GFF829 0.82 -0.4 136,188 - GFF829 0.82 +1.1 136,188 - GFF829 0.82 +0.2 136,256 + GFF829 0.84 -0.5 136,256 + GFF829 0.84 -1.8 136,257 - GFF829 0.84 -0.4 136,257 - GFF829 0.84 -1.0 136,257 - GFF829 0.84 -0.3 136,280 + GFF829 0.84 -0.5 136,400 + GFF829 0.87 -0.2 136,401 - GFF829 0.87 -0.6 136,401 - GFF829 0.87 -0.5 136,401 - GFF829 0.87 -0.4 136,401 - GFF829 0.87 +0.0 136,401 - GFF829 0.87 +0.6 136,401 - GFF829 0.87 -0.1 136,403 + GFF829 0.88 -1.0 136,403 + GFF829 0.88 +0.0 136,403 + GFF829 0.88 +0.4 136,403 + GFF829 0.88 -0.3 136,404 - GFF829 0.88 -0.0 136,404 - GFF829 0.88 -2.2 136,404 - GFF829 0.88 -0.2 136,404 - GFF829 0.88 -0.4 136,466 + GFF829 0.89 -0.2 136,466 + GFF829 0.89 -0.3 136,466 + GFF829 0.89 +0.9 136,466 + GFF829 0.89 +0.0 136,466 + GFF829 0.89 +1.1 136,466 + GFF829 0.89 -0.7 136,466 + GFF829 0.89 -0.8 136,466 + GFF829 0.89 +0.1 136,466 + GFF829 0.89 -0.5 136,467 - GFF829 0.89 -0.7 136,467 - GFF829 0.89 -1.4 136,467 - GFF829 0.89 -0.8 136,467 - GFF829 0.89 -0.2 136,467 - GFF829 0.89 -0.3 136,467 - GFF829 0.89 -0.4 136,467 - GFF829 0.89 +0.3 136,467 - GFF829 0.89 -1.3 136,589 + +0.5 136,589 + -1.4 136,590 - +0.2 136,625 + +0.1 136,625 + -0.2 136,673 + -0.7 136,674 - +0.5 136,694 + -0.5 136,694 + +0.3 136,695 - +1.0 136,695 - -0.4 136,695 - -0.4 136,695 - -0.4 136,815 - -1.3 136,909 - -0.1 137,194 + GFF830 0.30 -0.5 137,194 + GFF830 0.30 -0.6 137,194 + GFF830 0.30 -1.4 137,195 - GFF830 0.30 -1.4 137,195 - GFF830 0.30 +1.2 137,195 - GFF830 0.30 -1.2 137,560 + GFF830 0.64 -1.5 137,560 + GFF830 0.64 -0.2 138,231 + GFF831 0.15 -0.1 138,231 + GFF831 0.15 -0.0 138,231 + GFF831 0.15 +0.3 138,231 + GFF831 0.15 -0.1 138,232 - GFF831 0.15 -0.0 138,568 - -1.1 138,579 + +0.2 138,580 - +1.2 138,614 - -0.4
Or see this region's nucleotide sequence