Strain Fitness in Variovorax sp. SCN45 around GFF829

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF828 and GFF829 are separated by 20 nucleotidesGFF829 and GFF830 overlap by 4 nucleotides GFF828 - CobW GTPase involved in cobalt insertion for B12 biosynthesis, at 131,973 to 133,040 GFF828 GFF829 - Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2), at 133,061 to 136,879 GFF829 GFF830 - ChlI component of cobalt chelatase involved in B12 biosynthesis, at 136,876 to 137,943 GFF830 Position (kb) 133 134 135 136 137Strain fitness (log2 ratio) -2 -1 0 1 2at 132.192 kb on + strand, within GFF828at 132.192 kb on + strand, within GFF828at 132.192 kb on + strand, within GFF828at 132.192 kb on + strand, within GFF828at 132.837 kb on + strand, within GFF828at 132.837 kb on + strand, within GFF828at 132.837 kb on + strand, within GFF828at 132.837 kb on + strand, within GFF828at 132.837 kb on + strand, within GFF828at 132.837 kb on + strand, within GFF828at 132.838 kb on - strand, within GFF828at 133.253 kb on + strandat 133.253 kb on + strandat 133.253 kb on + strandat 133.253 kb on + strandat 133.253 kb on + strandat 133.254 kb on - strandat 133.254 kb on - strandat 133.254 kb on - strandat 133.254 kb on - strandat 133.254 kb on - strandat 133.254 kb on - strandat 133.254 kb on - strandat 133.283 kb on + strandat 133.283 kb on + strandat 133.283 kb on + strandat 133.284 kb on - strandat 133.284 kb on - strandat 133.284 kb on - strandat 133.284 kb on - strandat 133.284 kb on - strandat 133.356 kb on - strandat 133.456 kb on + strand, within GFF829at 133.457 kb on - strand, within GFF829at 133.493 kb on + strand, within GFF829at 133.493 kb on + strand, within GFF829at 133.493 kb on + strand, within GFF829at 133.493 kb on + strand, within GFF829at 133.494 kb on - strand, within GFF829at 133.494 kb on - strand, within GFF829at 133.494 kb on - strand, within GFF829at 133.494 kb on - strand, within GFF829at 133.494 kb on - strand, within GFF829at 133.494 kb on - strand, within GFF829at 133.709 kb on + strand, within GFF829at 133.709 kb on + strand, within GFF829at 133.709 kb on + strand, within GFF829at 133.710 kb on - strand, within GFF829at 133.710 kb on - strand, within GFF829at 133.710 kb on - strand, within GFF829at 134.147 kb on + strand, within GFF829at 134.147 kb on + strand, within GFF829at 134.147 kb on + strand, within GFF829at 134.147 kb on + strand, within GFF829at 134.148 kb on - strand, within GFF829at 134.148 kb on - strand, within GFF829at 134.148 kb on - strand, within GFF829at 134.259 kb on - strand, within GFF829at 134.259 kb on - strand, within GFF829at 134.352 kb on - strand, within GFF829at 134.352 kb on - strand, within GFF829at 134.468 kb on + strand, within GFF829at 134.468 kb on + strand, within GFF829at 134.468 kb on + strand, within GFF829at 134.468 kb on + strand, within GFF829at 134.468 kb on + strand, within GFF829at 134.468 kb on + strand, within GFF829at 134.468 kb on + strand, within GFF829at 134.529 kb on + strand, within GFF829at 134.529 kb on + strand, within GFF829at 134.529 kb on + strand, within GFF829at 134.529 kb on + strand, within GFF829at 134.529 kb on + strand, within GFF829at 134.529 kb on + strand, within GFF829at 134.530 kb on - strand, within GFF829at 134.530 kb on - strand, within GFF829at 134.530 kb on - strand, within GFF829at 134.530 kb on - strand, within GFF829at 134.530 kb on - strand, within GFF829at 134.530 kb on - strand, within GFF829at 134.625 kb on + strand, within GFF829at 134.625 kb on + strand, within GFF829at 134.625 kb on + strand, within GFF829at 134.625 kb on + strand, within GFF829at 134.625 kb on + strand, within GFF829at 134.625 kb on + strand, within GFF829at 134.625 kb on + strand, within GFF829at 134.625 kb on + strand, within GFF829at 134.625 kb on + strand, within GFF829at 134.626 kb on - strand, within GFF829at 134.626 kb on - strand, within GFF829at 134.626 kb on - strand, within GFF829at 134.626 kb on - strand, within GFF829at 134.626 kb on - strand, within GFF829at 134.626 kb on - strand, within GFF829at 134.626 kb on - strand, within GFF829at 134.626 kb on - strand, within GFF829at 134.626 kb on - strand, within GFF829at 134.667 kb on - strand, within GFF829at 134.667 kb on - strand, within GFF829at 134.675 kb on + strand, within GFF829at 134.675 kb on + strand, within GFF829at 134.676 kb on - strand, within GFF829at 134.676 kb on - strand, within GFF829at 134.676 kb on - strand, within GFF829at 134.676 kb on - strand, within GFF829at 134.676 kb on - strand, within GFF829at 134.708 kb on + strand, within GFF829at 134.708 kb on + strand, within GFF829at 134.708 kb on + strand, within GFF829at 134.708 kb on + strand, within GFF829at 134.708 kb on + strand, within GFF829at 134.708 kb on + strand, within GFF829at 134.708 kb on + strand, within GFF829at 134.709 kb on - strand, within GFF829at 134.709 kb on - strand, within GFF829at 134.709 kb on - strand, within GFF829at 134.709 kb on - strand, within GFF829at 134.709 kb on - strand, within GFF829at 134.709 kb on - strand, within GFF829at 134.720 kb on + strand, within GFF829at 134.720 kb on + strand, within GFF829at 134.720 kb on + strand, within GFF829at 134.720 kb on + strand, within GFF829at 134.720 kb on + strand, within GFF829at 134.720 kb on + strand, within GFF829at 134.720 kb on + strand, within GFF829at 134.720 kb on + strand, within GFF829at 134.720 kb on + strand, within GFF829at 134.721 kb on - strand, within GFF829at 134.721 kb on - strand, within GFF829at 134.721 kb on - strand, within GFF829at 134.721 kb on - strand, within GFF829at 134.721 kb on - strand, within GFF829at 134.864 kb on + strand, within GFF829at 135.008 kb on + strand, within GFF829at 135.008 kb on + strand, within GFF829at 135.008 kb on + strand, within GFF829at 135.008 kb on + strand, within GFF829at 135.009 kb on - strand, within GFF829at 135.009 kb on - strand, within GFF829at 135.009 kb on - strand, within GFF829at 135.009 kb on - strand, within GFF829at 135.011 kb on + strand, within GFF829at 135.012 kb on - strand, within GFF829at 135.012 kb on - strand, within GFF829at 135.012 kb on - strand, within GFF829at 135.152 kb on + strand, within GFF829at 135.152 kb on + strand, within GFF829at 135.152 kb on + strand, within GFF829at 135.152 kb on + strand, within GFF829at 135.153 kb on - strand, within GFF829at 135.153 kb on - strand, within GFF829at 135.153 kb on - strand, within GFF829at 135.153 kb on - strand, within GFF829at 136.187 kb on + strand, within GFF829at 136.188 kb on - strand, within GFF829at 136.188 kb on - strand, within GFF829at 136.188 kb on - strand, within GFF829at 136.256 kb on + strand, within GFF829at 136.256 kb on + strand, within GFF829at 136.257 kb on - strand, within GFF829at 136.257 kb on - strand, within GFF829at 136.257 kb on - strand, within GFF829at 136.280 kb on + strand, within GFF829at 136.400 kb on + strand, within GFF829at 136.401 kb on - strand, within GFF829at 136.401 kb on - strand, within GFF829at 136.401 kb on - strand, within GFF829at 136.401 kb on - strand, within GFF829at 136.401 kb on - strand, within GFF829at 136.401 kb on - strand, within GFF829at 136.403 kb on + strand, within GFF829at 136.403 kb on + strand, within GFF829at 136.403 kb on + strand, within GFF829at 136.403 kb on + strand, within GFF829at 136.404 kb on - strand, within GFF829at 136.404 kb on - strand, within GFF829at 136.404 kb on - strand, within GFF829at 136.404 kb on - strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.466 kb on + strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.467 kb on - strand, within GFF829at 136.589 kb on + strandat 136.589 kb on + strandat 136.590 kb on - strandat 136.625 kb on + strandat 136.625 kb on + strandat 136.673 kb on + strandat 136.674 kb on - strandat 136.694 kb on + strandat 136.694 kb on + strandat 136.695 kb on - strandat 136.695 kb on - strandat 136.695 kb on - strandat 136.695 kb on - strandat 136.815 kb on - strandat 136.909 kb on - strandat 137.194 kb on + strand, within GFF830at 137.194 kb on + strand, within GFF830at 137.194 kb on + strand, within GFF830at 137.195 kb on - strand, within GFF830at 137.195 kb on - strand, within GFF830at 137.195 kb on - strand, within GFF830at 137.560 kb on + strand, within GFF830at 137.560 kb on + strand, within GFF830

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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132,192 + GFF828 0.21 +0.6
132,192 + GFF828 0.21 -0.4
132,192 + GFF828 0.21 -1.4
132,192 + GFF828 0.21 +0.3
132,837 + GFF828 0.81 -0.5
132,837 + GFF828 0.81 -0.1
132,837 + GFF828 0.81 +1.3
132,837 + GFF828 0.81 -0.0
132,837 + GFF828 0.81 -0.8
132,837 + GFF828 0.81 +0.9
132,838 - GFF828 0.81 +0.9
133,253 + -0.2
133,253 + -0.8
133,253 + +0.0
133,253 + +0.6
133,253 + -0.4
133,254 - -2.1
133,254 - +0.1
133,254 - -0.3
133,254 - -1.2
133,254 - +1.3
133,254 - -0.7
133,254 - +0.6
133,283 + +0.9
133,283 + -0.0
133,283 + -0.0
133,284 - -0.8
133,284 - -1.3
133,284 - -0.4
133,284 - -1.0
133,284 - +2.6
133,356 - -0.0
133,456 + GFF829 0.10 -0.8
133,457 - GFF829 0.10 -0.3
133,493 + GFF829 0.11 -0.2
133,493 + GFF829 0.11 -0.2
133,493 + GFF829 0.11 -1.4
133,493 + GFF829 0.11 +0.5
133,494 - GFF829 0.11 -0.7
133,494 - GFF829 0.11 -0.3
133,494 - GFF829 0.11 -0.4
133,494 - GFF829 0.11 -0.8
133,494 - GFF829 0.11 -0.2
133,494 - GFF829 0.11 -1.1
133,709 + GFF829 0.17 +0.7
133,709 + GFF829 0.17 -1.5
133,709 + GFF829 0.17 -0.3
133,710 - GFF829 0.17 -0.9
133,710 - GFF829 0.17 -0.4
133,710 - GFF829 0.17 -0.5
134,147 + GFF829 0.28 -1.0
134,147 + GFF829 0.28 -0.2
134,147 + GFF829 0.28 -1.2
134,147 + GFF829 0.28 -0.3
134,148 - GFF829 0.28 +0.1
134,148 - GFF829 0.28 +0.3
134,148 - GFF829 0.28 +2.4
134,259 - GFF829 0.31 -0.2
134,259 - GFF829 0.31 +0.1
134,352 - GFF829 0.34 +0.1
134,352 - GFF829 0.34 +0.2
134,468 + GFF829 0.37 +0.1
134,468 + GFF829 0.37 -1.0
134,468 + GFF829 0.37 +0.1
134,468 + GFF829 0.37 -0.5
134,468 + GFF829 0.37 -0.4
134,468 + GFF829 0.37 +0.1
134,468 + GFF829 0.37 +1.6
134,529 + GFF829 0.38 -0.1
134,529 + GFF829 0.38 -0.9
134,529 + GFF829 0.38 -1.1
134,529 + GFF829 0.38 -0.2
134,529 + GFF829 0.38 +2.4
134,529 + GFF829 0.38 -0.4
134,530 - GFF829 0.38 -0.2
134,530 - GFF829 0.38 +0.2
134,530 - GFF829 0.38 +0.6
134,530 - GFF829 0.38 +0.6
134,530 - GFF829 0.38 +0.6
134,530 - GFF829 0.38 -0.4
134,625 + GFF829 0.41 +0.4
134,625 + GFF829 0.41 +0.2
134,625 + GFF829 0.41 -0.2
134,625 + GFF829 0.41 -1.0
134,625 + GFF829 0.41 +0.6
134,625 + GFF829 0.41 -0.2
134,625 + GFF829 0.41 -0.2
134,625 + GFF829 0.41 -0.4
134,625 + GFF829 0.41 -0.9
134,626 - GFF829 0.41 -0.8
134,626 - GFF829 0.41 -0.5
134,626 - GFF829 0.41 -1.1
134,626 - GFF829 0.41 -0.6
134,626 - GFF829 0.41 -1.0
134,626 - GFF829 0.41 -0.4
134,626 - GFF829 0.41 +0.0
134,626 - GFF829 0.41 -0.3
134,626 - GFF829 0.41 -0.7
134,667 - GFF829 0.42 +0.1
134,667 - GFF829 0.42 +0.0
134,675 + GFF829 0.42 -2.1
134,675 + GFF829 0.42 -0.1
134,676 - GFF829 0.42 -0.6
134,676 - GFF829 0.42 -0.6
134,676 - GFF829 0.42 +0.2
134,676 - GFF829 0.42 +0.8
134,676 - GFF829 0.42 -1.0
134,708 + GFF829 0.43 -1.8
134,708 + GFF829 0.43 -1.2
134,708 + GFF829 0.43 +0.3
134,708 + GFF829 0.43 -0.9
134,708 + GFF829 0.43 -0.2
134,708 + GFF829 0.43 +0.0
134,708 + GFF829 0.43 +1.6
134,709 - GFF829 0.43 -0.2
134,709 - GFF829 0.43 +1.3
134,709 - GFF829 0.43 +0.9
134,709 - GFF829 0.43 -1.2
134,709 - GFF829 0.43 -0.5
134,709 - GFF829 0.43 -1.5
134,720 + GFF829 0.43 +0.1
134,720 + GFF829 0.43 +1.6
134,720 + GFF829 0.43 +0.6
134,720 + GFF829 0.43 +1.6
134,720 + GFF829 0.43 -0.5
134,720 + GFF829 0.43 -0.5
134,720 + GFF829 0.43 -0.5
134,720 + GFF829 0.43 -0.1
134,720 + GFF829 0.43 +0.4
134,721 - GFF829 0.43 -0.5
134,721 - GFF829 0.43 -1.0
134,721 - GFF829 0.43 -0.1
134,721 - GFF829 0.43 +0.8
134,721 - GFF829 0.43 +0.1
134,864 + GFF829 0.47 +0.5
135,008 + GFF829 0.51 -0.1
135,008 + GFF829 0.51 -0.4
135,008 + GFF829 0.51 -0.4
135,008 + GFF829 0.51 -0.2
135,009 - GFF829 0.51 +0.0
135,009 - GFF829 0.51 -0.1
135,009 - GFF829 0.51 -0.3
135,009 - GFF829 0.51 +0.4
135,011 + GFF829 0.51 -0.2
135,012 - GFF829 0.51 +0.4
135,012 - GFF829 0.51 +1.6
135,012 - GFF829 0.51 -0.5
135,152 + GFF829 0.55 -0.2
135,152 + GFF829 0.55 -0.5
135,152 + GFF829 0.55 +0.7
135,152 + GFF829 0.55 -2.5
135,153 - GFF829 0.55 -0.3
135,153 - GFF829 0.55 +0.5
135,153 - GFF829 0.55 +0.3
135,153 - GFF829 0.55 +0.2
136,187 + GFF829 0.82 -0.4
136,188 - GFF829 0.82 -0.4
136,188 - GFF829 0.82 +1.1
136,188 - GFF829 0.82 +0.2
136,256 + GFF829 0.84 -0.5
136,256 + GFF829 0.84 -1.8
136,257 - GFF829 0.84 -0.4
136,257 - GFF829 0.84 -1.0
136,257 - GFF829 0.84 -0.3
136,280 + GFF829 0.84 -0.5
136,400 + GFF829 0.87 -0.2
136,401 - GFF829 0.87 -0.6
136,401 - GFF829 0.87 -0.5
136,401 - GFF829 0.87 -0.4
136,401 - GFF829 0.87 +0.0
136,401 - GFF829 0.87 +0.6
136,401 - GFF829 0.87 -0.1
136,403 + GFF829 0.88 -1.0
136,403 + GFF829 0.88 +0.0
136,403 + GFF829 0.88 +0.4
136,403 + GFF829 0.88 -0.3
136,404 - GFF829 0.88 -0.0
136,404 - GFF829 0.88 -2.2
136,404 - GFF829 0.88 -0.2
136,404 - GFF829 0.88 -0.4
136,466 + GFF829 0.89 -0.2
136,466 + GFF829 0.89 -0.3
136,466 + GFF829 0.89 +0.9
136,466 + GFF829 0.89 +0.0
136,466 + GFF829 0.89 +1.1
136,466 + GFF829 0.89 -0.7
136,466 + GFF829 0.89 -0.8
136,466 + GFF829 0.89 +0.1
136,466 + GFF829 0.89 -0.5
136,467 - GFF829 0.89 -0.7
136,467 - GFF829 0.89 -1.4
136,467 - GFF829 0.89 -0.8
136,467 - GFF829 0.89 -0.2
136,467 - GFF829 0.89 -0.3
136,467 - GFF829 0.89 -0.4
136,467 - GFF829 0.89 +0.3
136,467 - GFF829 0.89 -1.3
136,589 + +0.5
136,589 + -1.4
136,590 - +0.2
136,625 + +0.1
136,625 + -0.2
136,673 + -0.7
136,674 - +0.5
136,694 + -0.5
136,694 + +0.3
136,695 - +1.0
136,695 - -0.4
136,695 - -0.4
136,695 - -0.4
136,815 - -1.3
136,909 - -0.1
137,194 + GFF830 0.30 -0.5
137,194 + GFF830 0.30 -0.6
137,194 + GFF830 0.30 -1.4
137,195 - GFF830 0.30 -1.4
137,195 - GFF830 0.30 +1.2
137,195 - GFF830 0.30 -1.2
137,560 + GFF830 0.64 -1.5
137,560 + GFF830 0.64 -0.2

Or see this region's nucleotide sequence