Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7416 and GFF7417 are separated by 455 nucleotides GFF7417 and GFF7418 are separated by 28 nucleotides GFF7418 and GFF7419 are separated by 111 nucleotides
GFF7416 - DNA/RNA non-specific endonuclease, at 4,198 to 4,791
GFF7416
GFF7417 - no description, at 5,247 to 5,498
GFF7417
GFF7418 - no description, at 5,527 to 6,264
GFF7418
GFF7419 - hypothetical protein, at 6,376 to 7,020
GFF7419
Position (kb) 5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4.281 kb on + strand, within GFF7416 at 4.282 kb on - strand, within GFF7416 at 4.282 kb on - strand, within GFF7416 at 4.378 kb on + strand, within GFF7416 at 4.378 kb on + strand, within GFF7416 at 4.378 kb on + strand, within GFF7416 at 4.378 kb on + strand, within GFF7416 at 4.378 kb on + strand, within GFF7416 at 4.378 kb on + strand, within GFF7416 at 4.379 kb on - strand, within GFF7416 at 4.379 kb on - strand, within GFF7416 at 4.379 kb on - strand, within GFF7416 at 4.393 kb on + strand, within GFF7416 at 4.394 kb on - strand, within GFF7416 at 4.537 kb on + strand, within GFF7416 at 4.537 kb on + strand, within GFF7416 at 4.537 kb on + strand, within GFF7416 at 4.537 kb on + strand, within GFF7416 at 4.537 kb on + strand, within GFF7416 at 4.537 kb on + strand, within GFF7416 at 4.537 kb on + strand, within GFF7416 at 4.538 kb on - strand, within GFF7416 at 4.538 kb on - strand, within GFF7416 at 4.538 kb on - strand, within GFF7416 at 4.538 kb on - strand, within GFF7416 at 4.654 kb on + strand, within GFF7416 at 4.655 kb on - strand, within GFF7416 at 4.655 kb on - strand, within GFF7416 at 4.725 kb on + strand, within GFF7416 at 4.725 kb on + strand, within GFF7416 at 4.726 kb on - strand, within GFF7416 at 4.726 kb on - strand, within GFF7416 at 4.732 kb on + strand at 4.732 kb on + strand at 4.733 kb on - strand at 4.742 kb on + strand at 4.742 kb on + strand at 4.743 kb on - strand at 4.743 kb on - strand at 4.743 kb on - strand at 4.766 kb on + strand at 4.766 kb on + strand at 4.767 kb on - strand at 4.767 kb on - strand at 4.767 kb on - strand at 4.767 kb on - strand at 4.767 kb on - strand at 4.820 kb on - strand at 4.820 kb on - strand at 4.917 kb on + strand at 4.917 kb on + strand at 4.917 kb on + strand at 4.917 kb on + strand at 4.917 kb on + strand at 4.918 kb on - strand at 4.918 kb on - strand at 4.918 kb on - strand at 4.918 kb on - strand at 4.920 kb on + strand at 4.921 kb on - strand at 4.977 kb on - strand at 5.010 kb on + strand at 5.010 kb on + strand at 5.010 kb on + strand at 5.010 kb on + strand at 5.011 kb on - strand at 5.011 kb on - strand at 5.011 kb on - strand at 5.011 kb on - strand at 5.011 kb on - strand at 5.017 kb on + strand at 5.017 kb on + strand at 5.017 kb on + strand at 5.018 kb on - strand at 5.026 kb on + strand at 5.027 kb on - strand at 5.082 kb on + strand at 5.083 kb on - strand at 5.096 kb on + strand at 5.097 kb on - strand at 5.097 kb on - strand at 5.097 kb on - strand at 5.097 kb on - strand at 5.097 kb on - strand at 5.191 kb on + strand at 5.191 kb on + strand at 5.192 kb on - strand at 5.248 kb on + strand at 5.248 kb on + strand at 5.249 kb on - strand at 5.249 kb on - strand at 5.299 kb on + strand, within GFF7417 at 5.299 kb on + strand, within GFF7417 at 5.299 kb on + strand, within GFF7417 at 5.299 kb on + strand, within GFF7417 at 5.300 kb on - strand, within GFF7417 at 5.300 kb on - strand, within GFF7417 at 5.368 kb on + strand, within GFF7417 at 5.368 kb on + strand, within GFF7417 at 5.368 kb on + strand, within GFF7417 at 5.368 kb on + strand, within GFF7417 at 5.368 kb on + strand, within GFF7417 at 5.368 kb on + strand, within GFF7417 at 5.368 kb on + strand, within GFF7417 at 5.369 kb on - strand, within GFF7417 at 5.369 kb on - strand, within GFF7417 at 5.369 kb on - strand, within GFF7417 at 5.369 kb on - strand, within GFF7417 at 5.369 kb on - strand, within GFF7417 at 5.369 kb on - strand, within GFF7417 at 5.369 kb on - strand, within GFF7417 at 5.369 kb on - strand, within GFF7417 at 5.420 kb on - strand, within GFF7417 at 5.434 kb on + strand, within GFF7417 at 5.434 kb on + strand, within GFF7417 at 5.441 kb on + strand, within GFF7417 at 5.441 kb on + strand, within GFF7417 at 5.442 kb on - strand, within GFF7417 at 5.545 kb on + strand at 5.545 kb on + strand at 5.545 kb on + strand at 5.546 kb on - strand at 5.546 kb on - strand at 5.572 kb on + strand at 5.573 kb on - strand at 5.573 kb on - strand at 5.582 kb on + strand at 5.582 kb on + strand at 5.582 kb on + strand at 5.582 kb on + strand at 5.582 kb on + strand at 5.583 kb on - strand at 5.583 kb on - strand at 5.583 kb on - strand at 5.583 kb on - strand at 5.585 kb on + strand at 5.585 kb on + strand at 5.585 kb on + strand at 5.585 kb on + strand at 5.586 kb on - strand at 5.586 kb on - strand at 5.586 kb on - strand at 5.605 kb on + strand, within GFF7418 at 5.606 kb on - strand, within GFF7418 at 5.606 kb on - strand, within GFF7418 at 5.606 kb on - strand, within GFF7418 at 5.606 kb on - strand, within GFF7418 at 5.624 kb on + strand, within GFF7418 at 5.624 kb on + strand, within GFF7418 at 5.624 kb on + strand, within GFF7418 at 5.624 kb on + strand, within GFF7418 at 5.624 kb on + strand, within GFF7418 at 5.624 kb on + strand, within GFF7418 at 5.624 kb on + strand, within GFF7418 at 5.624 kb on + strand, within GFF7418 at 5.625 kb on - strand, within GFF7418 at 5.625 kb on - strand, within GFF7418 at 5.625 kb on - strand, within GFF7418 at 5.625 kb on - strand, within GFF7418 at 5.625 kb on - strand, within GFF7418 at 5.625 kb on - strand, within GFF7418 at 5.625 kb on - strand, within GFF7418 at 5.625 kb on - strand, within GFF7418 at 5.625 kb on - strand, within GFF7418 at 5.633 kb on + strand, within GFF7418 at 5.634 kb on - strand, within GFF7418 at 5.634 kb on - strand, within GFF7418 at 5.642 kb on + strand, within GFF7418 at 5.642 kb on + strand, within GFF7418 at 5.643 kb on - strand, within GFF7418 at 5.643 kb on - strand, within GFF7418 at 5.643 kb on - strand, within GFF7418 at 5.643 kb on - strand, within GFF7418 at 5.643 kb on - strand, within GFF7418 at 5.674 kb on - strand, within GFF7418 at 5.681 kb on + strand, within GFF7418 at 5.681 kb on + strand, within GFF7418 at 5.681 kb on + strand, within GFF7418 at 5.681 kb on + strand, within GFF7418 at 5.681 kb on + strand, within GFF7418 at 5.682 kb on - strand, within GFF7418 at 5.682 kb on - strand, within GFF7418 at 5.682 kb on - strand, within GFF7418 at 5.682 kb on - strand, within GFF7418 at 5.682 kb on - strand, within GFF7418 at 5.682 kb on - strand, within GFF7418 at 5.682 kb on - strand, within GFF7418 at 5.750 kb on + strand, within GFF7418 at 5.750 kb on + strand, within GFF7418 at 5.750 kb on + strand, within GFF7418 at 5.750 kb on + strand, within GFF7418 at 5.750 kb on + strand, within GFF7418 at 5.750 kb on + strand, within GFF7418 at 5.750 kb on + strand, within GFF7418 at 5.751 kb on - strand, within GFF7418 at 5.751 kb on - strand, within GFF7418 at 5.751 kb on - strand, within GFF7418 at 5.751 kb on - strand, within GFF7418 at 5.751 kb on - strand, within GFF7418 at 5.751 kb on - strand, within GFF7418 at 5.751 kb on - strand, within GFF7418 at 6.017 kb on + strand, within GFF7418 at 6.017 kb on + strand, within GFF7418 at 6.207 kb on - strand at 6.207 kb on - strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.270 kb on + strand at 6.271 kb on - strand at 6.271 kb on - strand at 6.271 kb on - strand at 6.271 kb on - strand at 6.271 kb on - strand at 6.271 kb on - strand at 6.271 kb on - strand at 6.271 kb on - strand at 6.271 kb on - strand at 6.271 kb on - strand at 6.271 kb on - strand at 6.273 kb on + strand at 6.273 kb on + strand at 6.273 kb on + strand at 6.273 kb on + strand at 6.274 kb on - strand at 6.274 kb on - strand at 6.274 kb on - strand at 6.274 kb on - strand at 6.274 kb on - strand at 6.364 kb on + strand at 6.364 kb on + strand at 6.364 kb on + strand at 6.365 kb on - strand at 6.365 kb on - strand at 6.365 kb on - strand at 6.377 kb on + strand at 6.377 kb on + strand at 6.377 kb on + strand at 6.377 kb on + strand at 6.377 kb on + strand at 6.377 kb on + strand at 6.377 kb on + strand at 6.377 kb on + strand at 6.377 kb on + strand at 6.378 kb on - strand at 6.378 kb on - strand at 6.378 kb on - strand at 6.430 kb on + strand at 6.430 kb on + strand at 6.430 kb on + strand at 6.430 kb on + strand at 6.430 kb on + strand at 6.430 kb on + strand at 6.430 kb on + strand at 6.430 kb on + strand at 6.430 kb on + strand at 6.430 kb on + strand at 6.430 kb on + strand at 6.431 kb on - strand at 6.431 kb on - strand at 6.431 kb on - strand at 6.431 kb on - strand at 6.431 kb on - strand at 6.431 kb on - strand at 6.431 kb on - strand at 6.431 kb on - strand at 6.431 kb on - strand at 6.431 kb on - strand at 6.431 kb on - strand at 6.431 kb on - strand at 6.431 kb on - strand at 6.431 kb on - strand at 6.490 kb on + strand, within GFF7419
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 4,281 + GFF7416 0.14 -1.3 4,282 - GFF7416 0.14 +0.2 4,282 - GFF7416 0.14 -0.0 4,378 + GFF7416 0.30 +0.1 4,378 + GFF7416 0.30 +0.8 4,378 + GFF7416 0.30 +0.2 4,378 + GFF7416 0.30 -0.2 4,378 + GFF7416 0.30 -0.5 4,378 + GFF7416 0.30 -0.3 4,379 - GFF7416 0.30 +0.2 4,379 - GFF7416 0.30 +0.4 4,379 - GFF7416 0.30 +0.7 4,393 + GFF7416 0.33 +1.3 4,394 - GFF7416 0.33 +0.1 4,537 + GFF7416 0.57 +0.1 4,537 + GFF7416 0.57 -1.4 4,537 + GFF7416 0.57 -0.9 4,537 + GFF7416 0.57 -0.1 4,537 + GFF7416 0.57 -1.5 4,537 + GFF7416 0.57 -0.6 4,537 + GFF7416 0.57 +0.1 4,538 - GFF7416 0.57 -0.7 4,538 - GFF7416 0.57 +1.3 4,538 - GFF7416 0.57 +0.7 4,538 - GFF7416 0.57 -1.1 4,654 + GFF7416 0.77 +0.2 4,655 - GFF7416 0.77 -0.9 4,655 - GFF7416 0.77 -0.7 4,725 + GFF7416 0.89 -0.4 4,725 + GFF7416 0.89 +0.1 4,726 - GFF7416 0.89 -0.3 4,726 - GFF7416 0.89 +2.1 4,732 + -0.3 4,732 + -3.5 4,733 - +0.1 4,742 + +1.1 4,742 + +0.2 4,743 - -0.1 4,743 - -0.2 4,743 - -0.9 4,766 + -0.5 4,766 + +0.4 4,767 - -0.3 4,767 - -0.6 4,767 - +0.3 4,767 - -0.4 4,767 - -0.3 4,820 - -1.4 4,820 - +0.0 4,917 + -0.0 4,917 + -1.3 4,917 + -0.9 4,917 + +0.3 4,917 + +0.2 4,918 - -0.3 4,918 - -0.1 4,918 - -0.8 4,918 - -0.5 4,920 + -0.3 4,921 - +0.6 4,977 - +0.2 5,010 + -0.4 5,010 + +0.0 5,010 + -1.3 5,010 + +1.0 5,011 - +0.2 5,011 - +0.7 5,011 - -1.2 5,011 - +0.3 5,011 - +0.3 5,017 + +0.1 5,017 + -0.9 5,017 + +0.3 5,018 - -0.9 5,026 + -0.8 5,027 - -0.3 5,082 + +0.6 5,083 - +0.2 5,096 + -0.3 5,097 - -0.1 5,097 - +0.0 5,097 - +0.3 5,097 - -0.4 5,097 - +0.8 5,191 + -0.8 5,191 + -0.0 5,192 - -0.5 5,248 + -0.3 5,248 + -0.7 5,249 - -0.1 5,249 - +0.0 5,299 + GFF7417 0.21 +1.9 5,299 + GFF7417 0.21 -0.2 5,299 + GFF7417 0.21 -0.3 5,299 + GFF7417 0.21 +0.1 5,300 - GFF7417 0.21 +1.7 5,300 - GFF7417 0.21 +1.3 5,368 + GFF7417 0.48 -0.5 5,368 + GFF7417 0.48 -0.1 5,368 + GFF7417 0.48 +0.1 5,368 + GFF7417 0.48 -0.9 5,368 + GFF7417 0.48 +0.1 5,368 + GFF7417 0.48 +0.8 5,368 + GFF7417 0.48 +0.7 5,369 - GFF7417 0.48 +0.7 5,369 - GFF7417 0.48 -1.0 5,369 - GFF7417 0.48 +0.7 5,369 - GFF7417 0.48 -1.4 5,369 - GFF7417 0.48 -0.6 5,369 - GFF7417 0.48 +0.9 5,369 - GFF7417 0.48 -0.9 5,369 - GFF7417 0.48 +0.0 5,420 - GFF7417 0.69 +0.1 5,434 + GFF7417 0.74 +0.2 5,434 + GFF7417 0.74 +0.6 5,441 + GFF7417 0.77 -0.8 5,441 + GFF7417 0.77 +0.9 5,442 - GFF7417 0.77 -0.5 5,545 + -0.3 5,545 + -0.1 5,545 + -0.7 5,546 - -0.9 5,546 - -0.4 5,572 + -0.6 5,573 - +0.7 5,573 - +0.1 5,582 + -0.6 5,582 + +0.6 5,582 + -0.0 5,582 + -0.6 5,582 + -1.3 5,583 - +0.1 5,583 - +0.8 5,583 - -0.8 5,583 - -0.4 5,585 + -0.8 5,585 + +0.8 5,585 + -0.9 5,585 + -1.1 5,586 - -0.5 5,586 - -0.2 5,586 - -1.0 5,605 + GFF7418 0.11 +0.2 5,606 - GFF7418 0.11 -1.1 5,606 - GFF7418 0.11 -1.3 5,606 - GFF7418 0.11 +0.0 5,606 - GFF7418 0.11 -0.7 5,624 + GFF7418 0.13 +0.1 5,624 + GFF7418 0.13 +0.1 5,624 + GFF7418 0.13 -0.3 5,624 + GFF7418 0.13 +0.6 5,624 + GFF7418 0.13 +0.4 5,624 + GFF7418 0.13 -0.7 5,624 + GFF7418 0.13 +0.6 5,624 + GFF7418 0.13 -0.5 5,625 - GFF7418 0.13 -0.6 5,625 - GFF7418 0.13 -0.4 5,625 - GFF7418 0.13 -0.8 5,625 - GFF7418 0.13 +0.5 5,625 - GFF7418 0.13 -0.4 5,625 - GFF7418 0.13 +0.2 5,625 - GFF7418 0.13 -0.6 5,625 - GFF7418 0.13 -1.3 5,625 - GFF7418 0.13 +0.3 5,633 + GFF7418 0.14 +0.3 5,634 - GFF7418 0.14 -0.7 5,634 - GFF7418 0.14 -0.5 5,642 + GFF7418 0.16 -0.5 5,642 + GFF7418 0.16 -1.7 5,643 - GFF7418 0.16 -0.6 5,643 - GFF7418 0.16 -0.2 5,643 - GFF7418 0.16 -0.3 5,643 - GFF7418 0.16 +1.0 5,643 - GFF7418 0.16 +1.1 5,674 - GFF7418 0.20 +2.7 5,681 + GFF7418 0.21 +0.9 5,681 + GFF7418 0.21 -0.9 5,681 + GFF7418 0.21 -0.3 5,681 + GFF7418 0.21 -0.8 5,681 + GFF7418 0.21 +0.2 5,682 - GFF7418 0.21 +0.7 5,682 - GFF7418 0.21 -0.1 5,682 - GFF7418 0.21 -0.4 5,682 - GFF7418 0.21 -1.4 5,682 - GFF7418 0.21 +0.7 5,682 - GFF7418 0.21 -0.7 5,682 - GFF7418 0.21 -0.0 5,750 + GFF7418 0.30 -0.5 5,750 + GFF7418 0.30 -1.1 5,750 + GFF7418 0.30 -0.3 5,750 + GFF7418 0.30 -0.0 5,750 + GFF7418 0.30 -0.2 5,750 + GFF7418 0.30 +0.5 5,750 + GFF7418 0.30 -2.1 5,751 - GFF7418 0.30 -0.3 5,751 - GFF7418 0.30 +1.1 5,751 - GFF7418 0.30 +0.3 5,751 - GFF7418 0.30 -0.4 5,751 - GFF7418 0.30 -0.7 5,751 - GFF7418 0.30 -0.8 5,751 - GFF7418 0.30 -1.1 6,017 + GFF7418 0.66 -0.1 6,017 + GFF7418 0.66 -0.3 6,207 - +1.3 6,207 - +0.2 6,270 + -0.6 6,270 + -1.0 6,270 + -0.5 6,270 + -0.2 6,270 + -0.0 6,270 + -0.3 6,270 + +0.1 6,270 + -0.7 6,270 + -0.6 6,270 + +0.7 6,270 + -0.6 6,270 + -0.9 6,270 + +0.2 6,270 + -0.9 6,270 + -0.8 6,270 + +0.6 6,270 + +0.4 6,270 + -0.3 6,271 - -0.1 6,271 - -0.5 6,271 - +0.5 6,271 - -0.2 6,271 - -0.3 6,271 - +1.0 6,271 - +0.3 6,271 - +1.3 6,271 - +0.5 6,271 - -1.1 6,271 - +0.1 6,273 + +1.9 6,273 + -0.3 6,273 + +0.3 6,273 + -0.2 6,274 - +0.7 6,274 - -1.1 6,274 - +1.3 6,274 - -1.5 6,274 - +0.4 6,364 + -1.0 6,364 + -0.3 6,364 + -1.1 6,365 - +0.5 6,365 - -1.1 6,365 - -0.2 6,377 + -0.2 6,377 + +1.7 6,377 + -0.1 6,377 + +0.6 6,377 + -0.2 6,377 + -1.1 6,377 + -0.1 6,377 + -0.3 6,377 + -0.3 6,378 - -0.2 6,378 - -1.2 6,378 - -0.1 6,430 + -0.6 6,430 + -1.5 6,430 + -0.5 6,430 + -1.3 6,430 + -0.8 6,430 + -0.1 6,430 + +0.3 6,430 + -0.5 6,430 + -0.7 6,430 + -0.7 6,430 + -1.2 6,431 - -1.0 6,431 - +0.7 6,431 - -0.3 6,431 - -2.3 6,431 - +1.1 6,431 - -0.5 6,431 - +2.4 6,431 - +0.4 6,431 - -0.9 6,431 - +0.2 6,431 - +0.1 6,431 - +0.0 6,431 - +0.3 6,431 - -0.3 6,490 + GFF7419 0.18 +0.3
Or see this region's nucleotide sequence