Strain Fitness in Variovorax sp. SCN45 around GFF7414

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
1,671	+		GFF7412	0.44	-0.3
1,671	+		GFF7412	0.44	-1.6
1,671	+		GFF7412	0.44	+0.4
1,671	+		GFF7412	0.44	-1.7
1,672	-		GFF7412	0.44	-0.5
1,672	-		GFF7412	0.44	-0.8
1,672	-		GFF7412	0.44	-0.0
1,672	-		GFF7412	0.44	-0.1
1,672	-		GFF7412	0.44	-0.6
1,672	-		GFF7412	0.44	-1.0
1,672	-		GFF7412	0.44	-0.2
1,672	-		GFF7412	0.44	-0.3
1,672	-		GFF7412	0.44	-0.1
1,672	-		GFF7412	0.44	-0.4
1,707	+		GFF7412	0.50	-0.5
1,707	+		GFF7412	0.50	-0.9
1,707	+		GFF7412	0.50	+0.3
1,707	+		GFF7412	0.50	+0.8
1,707	+		GFF7412	0.50	+0.1
1,708	-		GFF7412	0.50	-0.2
1,758	+		GFF7412	0.59	-1.1
1,758	+		GFF7412	0.59	-1.3
1,758	+		GFF7412	0.59	+0.0
1,758	+		GFF7412	0.59	-0.7
1,758	+		GFF7412	0.59	+0.3
1,758	+		GFF7412	0.59	-1.7
1,758	+		GFF7412	0.59	-0.1
1,758	+		GFF7412	0.59	-0.7
1,759	-		GFF7412	0.59	-0.6
1,759	-		GFF7412	0.59	-0.2
1,759	-		GFF7412	0.59	-0.9
1,759	-		GFF7412	0.59	+0.1
1,759	-		GFF7412	0.59	-0.2
1,759	-		GFF7412	0.59	-0.1
1,863	+		GFF7412	0.77	-0.6
1,863	+		GFF7412	0.77	-0.1
1,864	-		GFF7412	0.77	-0.3
1,864	-		GFF7412	0.77	+0.5
1,864	-		GFF7412	0.77	-0.1
1,864	-		GFF7412	0.77	-0.7
1,864	-		GFF7412	0.77	+0.2
1,864	-		GFF7412	0.77	+0.5
1,864	-		GFF7412	0.77	-0.3
1,902	+		GFF7412	0.84	+1.7
1,902	+		GFF7412	0.84	-0.1
1,903	-		GFF7412	0.84	+0.1
1,965	-				-0.5
1,965	-				+0.0
2,127	+		GFF7413	0.24	-0.3
2,128	-		GFF7413	0.24	-0.7
2,128	-		GFF7413	0.24	-2.0
2,128	-		GFF7413	0.24	-0.3
2,255	+		GFF7413	0.48	-1.7
2,255	+		GFF7413	0.48	-1.2
2,256	-		GFF7413	0.48	-0.6
2,256	-		GFF7413	0.48	-0.7
2,256	-		GFF7413	0.48	+1.3
2,256	-		GFF7413	0.48	-0.2
2,256	-		GFF7413	0.48	-0.9
2,330	+		GFF7413	0.61	+0.4
2,330	+		GFF7413	0.61	-0.1
2,331	-		GFF7413	0.61	-0.7
2,331	-		GFF7413	0.61	+0.1
2,331	-		GFF7413	0.61	+0.3
2,331	-		GFF7413	0.61	+2.7
2,331	-		GFF7413	0.61	+0.1
2,331	-		GFF7413	0.61	+0.4
2,331	-		GFF7413	0.61	-1.2
2,331	-		GFF7413	0.61	+0.2
2,331	-		GFF7413	0.61	-0.4
2,445	+		GFF7413	0.82	+1.4
2,445	+		GFF7413	0.82	-0.2
2,445	+		GFF7413	0.82	+1.7
2,445	+		GFF7413	0.82	-0.7
2,445	+		GFF7413	0.82	+0.2
2,445	+		GFF7413	0.82	-0.0
2,445	+		GFF7413	0.82	+0.3
2,445	+		GFF7413	0.82	-0.9
2,445	+		GFF7413	0.82	+0.2
2,445	+		GFF7413	0.82	-0.4
2,446	-		GFF7413	0.82	-0.3
2,446	-		GFF7413	0.82	+1.0
2,446	-		GFF7413	0.82	-0.4
2,446	-		GFF7413	0.82	+0.3
2,446	-		GFF7413	0.82	+0.7
2,446	-		GFF7413	0.82	+0.9
2,446	-		GFF7413	0.82	+1.7
2,446	-		GFF7413	0.82	-0.3
2,446	-		GFF7413	0.82	-1.1
2,446	-		GFF7413	0.82	-0.7
2,446	-		GFF7413	0.82	+0.4
2,559	+				-1.1
2,559	+				+1.1
2,559	+				-0.5
2,560	-				+0.1
2,560	-				+0.2
2,560	-				-0.3
2,560	-				+0.7
2,560	-				+0.1
2,560	-				+0.3
2,560	-				-0.1
2,596	+				-0.1
2,596	+				-0.3
2,597	-				+0.3
2,652	+				-0.8
2,653	-				-0.6
2,653	-				+0.6
2,664	+		GFF7414	0.10	-1.2
2,664	+		GFF7414	0.10	+0.1
2,664	+		GFF7414	0.10	-0.1
2,664	+		GFF7414	0.10	-0.7
2,664	+		GFF7414	0.10	-0.6
2,664	+		GFF7414	0.10	-2.2
2,664	+		GFF7414	0.10	-0.4
2,664	+		GFF7414	0.10	-0.8
2,664	+		GFF7414	0.10	-0.2
2,664	+		GFF7414	0.10	-0.9
2,664	+		GFF7414	0.10	+0.3
2,664	+		GFF7414	0.10	+0.9
2,665	-		GFF7414	0.10	+0.6
2,665	-		GFF7414	0.10	-1.0
2,665	-		GFF7414	0.10	+1.1
2,665	-		GFF7414	0.10	+0.9
2,665	-		GFF7414	0.10	-0.3
2,665	-		GFF7414	0.10	-1.7
2,665	-		GFF7414	0.10	+0.1
2,665	-		GFF7414	0.10	+1.3
2,665	-		GFF7414	0.10	+0.1
2,665	-		GFF7414	0.10	+0.7
2,665	-		GFF7414	0.10	+0.1
2,685	-		GFF7414	0.14	+0.6
2,685	-		GFF7414	0.14	-1.1
2,694	+		GFF7414	0.16	-0.4
2,695	-		GFF7414	0.16	-1.1
2,695	-		GFF7414	0.16	+0.2
2,695	-		GFF7414	0.16	+1.7
2,695	-		GFF7414	0.16	-0.7
2,718	+		GFF7414	0.21	+0.1
2,755	+		GFF7414	0.29	+1.1
2,755	+		GFF7414	0.29	-0.2
2,756	-		GFF7414	0.29	-0.9
2,790	+		GFF7414	0.36	-0.1
2,790	+		GFF7414	0.36	-0.1
2,790	+		GFF7414	0.36	-0.2
2,790	+		GFF7414	0.36	-0.3
2,790	+		GFF7414	0.36	-0.6
2,790	+		GFF7414	0.36	-0.5
2,790	+		GFF7414	0.36	-1.0
2,791	-		GFF7414	0.36	-0.2
2,791	-		GFF7414	0.36	-0.5
2,791	-		GFF7414	0.36	-0.4
2,791	-		GFF7414	0.36	+0.2
2,791	-		GFF7414	0.36	-0.1
2,791	-		GFF7414	0.36	-0.7
2,791	-		GFF7414	0.36	-0.9
2,791	-		GFF7414	0.36	+0.6
2,862	+		GFF7414	0.51	+0.3
2,862	+		GFF7414	0.51	+0.3
2,863	-		GFF7414	0.51	+0.7
2,892	+		GFF7414	0.57	+0.1
2,892	+		GFF7414	0.57	-1.2
2,892	+		GFF7414	0.57	-0.8
2,892	+		GFF7414	0.57	-0.5
2,892	+		GFF7414	0.57	-1.1
2,892	+		GFF7414	0.57	-0.2
2,893	-		GFF7414	0.57	-1.0
2,893	-		GFF7414	0.57	-0.5
2,893	-		GFF7414	0.57	-0.8
2,893	-		GFF7414	0.57	+0.9
2,893	-		GFF7414	0.57	+0.3
2,893	-		GFF7414	0.57	-0.1
2,893	-		GFF7414	0.57	+0.5
2,893	-		GFF7414	0.57	+0.7
2,965	+		GFF7414	0.72	-0.3
2,965	+		GFF7414	0.72	+0.1
2,965	+		GFF7414	0.72	+0.2
2,965	+		GFF7414	0.72	+0.1
2,966	-		GFF7414	0.72	+0.4
2,966	-		GFF7414	0.72	+0.3
2,966	-		GFF7414	0.72	+1.3
2,995	+		GFF7414	0.78	+0.0
2,995	+		GFF7414	0.78	-0.6
2,995	+		GFF7414	0.78	-0.5
2,995	+		GFF7414	0.78	-2.2
2,996	-		GFF7414	0.78	+0.5
2,996	-		GFF7414	0.78	-0.5
2,996	-		GFF7414	0.78	-0.6
2,996	-		GFF7414	0.78	-0.6
2,996	-		GFF7414	0.78	-0.8
2,996	-		GFF7414	0.78	+0.1
3,055	+				-0.1
3,055	+				+0.7
3,055	+				+0.1
3,055	+				-0.2
3,055	+				+0.9
3,055	+				-0.7
3,055	+				+0.3
3,055	+				+2.3
3,055	+				+0.7
3,055	+				-0.6
3,055	+				+0.3
3,056	-				-0.2
3,056	-				+0.0
3,056	-				+0.8
3,056	-				-0.2
3,056	-				-0.4
3,056	-				-0.5
3,056	-				+0.4
3,056	-				+0.1
3,056	-				-0.2
3,056	-				-1.1
3,056	-				-0.6
3,056	-				-0.1
3,077	+				-1.4
3,077	+				-0.6
3,077	+				-0.7
3,077	+				-0.4
3,077	+				-0.4
3,077	+				-0.1
3,077	+				+0.4
3,078	-				-0.3
3,078	-				-0.9
3,078	-				+0.5
3,088	+				+0.2
3,088	+				-0.3
3,088	+				-0.1
3,088	+				-0.2
3,088	+				-0.4
3,089	-				-1.7
3,089	-				+0.3
3,089	-				-0.6
3,089	-				-0.7
3,089	-				+0.4
3,089	-				+1.1
3,089	-				-0.6
3,089	-				-0.3
3,089	-				-0.5
3,089	-				+0.3
3,089	-				-0.5
3,089	-				-0.2
3,089	-				-0.9
3,089	-				-0.7
3,089	-				-0.8
3,157	+				-0.8
3,157	+				+0.1
3,157	+				+0.1
3,157	+				+0.2
3,157	+				-1.1
3,157	+				-0.7
3,157	+				+0.9
3,157	+				-0.7
3,157	+				-1.2
3,158	-				-0.9
3,158	-				+1.1
3,158	-				-0.3
3,158	-				-1.4
3,158	-				-0.5
3,158	-				-0.9
3,158	-				+0.2
3,194	-				-0.7
3,211	+				-0.0
3,211	+				-0.2
3,257	+				-0.3
3,257	+				-0.8
3,258	-				+0.3
3,288	+				-0.4
3,288	+				+0.2
3,288	+				-0.3
3,288	+				-0.4
3,289	-				+1.1
3,289	-				+0.7
3,289	-				-0.7
3,289	-				+0.8
3,289	-				-0.9
3,294	+				-0.8
3,294	+				-0.1
3,294	+				-1.0
3,294	+				+0.6
3,295	-				-1.3
3,295	-				-0.3
3,351	+				-0.3
3,430	+				+1.4
3,430	+				+0.3
3,431	-				-1.4
3,508	+		GFF7415	0.15	+0.7
3,508	+		GFF7415	0.15	-0.6
3,508	+		GFF7415	0.15	-0.1
3,509	-		GFF7415	0.15	-1.2
3,509	-		GFF7415	0.15	-1.5
3,645	+		GFF7415	0.33	-0.3
3,645	+		GFF7415	0.33	-1.6
3,645	+		GFF7415	0.33	-0.1
3,645	+		GFF7415	0.33	+0.3
3,645	+		GFF7415	0.33	-0.3
3,645	+		GFF7415	0.33	-0.0
3,645	+		GFF7415	0.33	-0.8
3,645	+		GFF7415	0.33	+0.5
3,645	+		GFF7415	0.33	+0.5
3,645	+		GFF7415	0.33	+0.1
3,645	+		GFF7415	0.33	-0.1
3,645	+		GFF7415	0.33	+0.5
3,645	+		GFF7415	0.33	-1.2
3,645	+		GFF7415	0.33	-0.4
3,645	+		GFF7415	0.33	-0.3
3,646	-		GFF7415	0.33	-0.8
3,646	-		GFF7415	0.33	-0.1
3,646	-		GFF7415	0.33	-0.8
3,646	-		GFF7415	0.33	-0.2
3,646	-		GFF7415	0.33	-0.1
3,646	-		GFF7415	0.33	+0.3
3,646	-		GFF7415	0.33	+1.3
3,646	-		GFF7415	0.33	+1.3
3,646	-		GFF7415	0.33	-0.0
3,646	-		GFF7415	0.33	-0.2
3,646	-		GFF7415	0.33	+0.3
3,646	-		GFF7415	0.33	-0.8
3,646	-		GFF7415	0.33	+0.8
3,652	+		GFF7415	0.33	+0.1
3,706	+		GFF7415	0.40	+2.0
3,707	-		GFF7415	0.40	-1.9
3,707	-		GFF7415	0.40	+1.1
3,726	+		GFF7415	0.43	+0.2
3,726	+		GFF7415	0.43	-2.0
3,726	+		GFF7415	0.43	-1.3
3,726	+		GFF7415	0.43	-0.9
3,726	+		GFF7415	0.43	+0.4
3,726	+		GFF7415	0.43	-0.8
3,726	+		GFF7415	0.43	-0.7
3,726	+		GFF7415	0.43	-0.2
3,726	+		GFF7415	0.43	+0.0
3,726	+		GFF7415	0.43	+0.2
3,727	-		GFF7415	0.43	+0.1
3,765	+		GFF7415	0.48	+0.4
3,765	+		GFF7415	0.48	+1.7
3,765	+		GFF7415	0.48	-0.7
3,766	-		GFF7415	0.48	+0.5
3,766	-		GFF7415	0.48	-1.2
3,883	-		GFF7415	0.63	-0.4
3,947	+		GFF7415	0.71	-0.2
3,947	+		GFF7415	0.71	-0.2
3,947	+		GFF7415	0.71	-0.7
3,948	-		GFF7415	0.71	-0.5
3,948	-		GFF7415	0.71	+0.7
3,964	+		GFF7415	0.73	+0.9
3,973	+		GFF7415	0.74	+0.5
3,973	+		GFF7415	0.74	+0.3
3,974	-		GFF7415	0.74	-0.4
3,974	-		GFF7415	0.74	-0.2
3,994	+		GFF7415	0.77	-0.4
3,994	+		GFF7415	0.77	-1.0
4,047	-		GFF7415	0.83	-0.7
4,067	+		GFF7415	0.86	-0.6
4,068	-		GFF7415	0.86	+0.7
4,068	-		GFF7415	0.86	-0.1
4,068	-		GFF7415	0.86	+1.1