Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7067 and GFF7068 are separated by 117 nucleotides GFF7068 and GFF7069 are separated by 10 nucleotides GFF7069 and GFF7070 overlap by 14 nucleotides GFF7070 and GFF7071 are separated by 117 nucleotides
GFF7067 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 24,789 to 25,718
GFF7067
GFF7068 - hypothetical protein, at 25,836 to 26,258
GFF7068
GFF7069 - Transcriptional regulator, at 26,269 to 26,736
GFF7069
GFF7070 - Ribosome-associated inhibitor A, at 26,723 to 27,082
GFF7070
GFF7071 - putative signal-transduction protein with CBS domains, at 27,200 to 27,628
GFF7071
Position (kb) 26
27 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.272 kb on + strand, within GFF7067 at 25.296 kb on + strand, within GFF7067 at 25.296 kb on + strand, within GFF7067 at 25.296 kb on + strand, within GFF7067 at 25.297 kb on - strand, within GFF7067 at 25.297 kb on - strand, within GFF7067 at 25.297 kb on - strand, within GFF7067 at 25.297 kb on - strand, within GFF7067 at 25.428 kb on + strand, within GFF7067 at 25.771 kb on - strand at 25.974 kb on + strand, within GFF7068 at 25.974 kb on + strand, within GFF7068 at 25.974 kb on + strand, within GFF7068 at 25.974 kb on + strand, within GFF7068 at 25.974 kb on + strand, within GFF7068 at 25.974 kb on + strand, within GFF7068 at 25.975 kb on - strand, within GFF7068 at 25.975 kb on - strand, within GFF7068 at 25.975 kb on - strand, within GFF7068 at 25.975 kb on - strand, within GFF7068 at 26.142 kb on + strand, within GFF7068 at 26.148 kb on + strand, within GFF7068 at 26.148 kb on + strand, within GFF7068 at 26.148 kb on + strand, within GFF7068 at 26.148 kb on + strand, within GFF7068 at 26.148 kb on + strand, within GFF7068 at 26.149 kb on - strand, within GFF7068 at 26.149 kb on - strand, within GFF7068 at 26.149 kb on - strand, within GFF7068 at 26.149 kb on - strand, within GFF7068 at 26.149 kb on - strand, within GFF7068 at 26.149 kb on - strand, within GFF7068 at 26.149 kb on - strand, within GFF7068 at 26.149 kb on - strand, within GFF7068 at 26.149 kb on - strand, within GFF7068 at 26.193 kb on + strand, within GFF7068 at 26.193 kb on + strand, within GFF7068 at 26.332 kb on + strand, within GFF7069 at 26.332 kb on + strand, within GFF7069 at 26.389 kb on + strand, within GFF7069 at 26.389 kb on + strand, within GFF7069 at 26.390 kb on - strand, within GFF7069 at 26.471 kb on - strand, within GFF7069 at 26.608 kb on + strand, within GFF7069 at 26.609 kb on - strand, within GFF7069 at 26.725 kb on - strand at 27.147 kb on + strand at 27.147 kb on + strand at 27.147 kb on + strand at 27.147 kb on + strand at 27.148 kb on - strand at 27.148 kb on - strand at 27.148 kb on - strand at 27.153 kb on + strand at 27.154 kb on - strand at 27.154 kb on - strand at 27.154 kb on - strand at 27.154 kb on - strand at 27.154 kb on - strand at 27.213 kb on + strand at 27.213 kb on + strand at 27.213 kb on + strand at 27.213 kb on + strand at 27.213 kb on + strand at 27.213 kb on + strand at 27.214 kb on - strand at 27.214 kb on - strand at 27.214 kb on - strand at 27.214 kb on - strand at 27.462 kb on + strand, within GFF7071 at 27.658 kb on + strand at 27.695 kb on - strand at 27.695 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 25,272 + GFF7067 0.52 -0.6 25,296 + GFF7067 0.55 -0.1 25,296 + GFF7067 0.55 +0.1 25,296 + GFF7067 0.55 +0.1 25,297 - GFF7067 0.55 -0.3 25,297 - GFF7067 0.55 -0.1 25,297 - GFF7067 0.55 +1.6 25,297 - GFF7067 0.55 -1.0 25,428 + GFF7067 0.69 +0.8 25,771 - -1.4 25,974 + GFF7068 0.33 -0.5 25,974 + GFF7068 0.33 +0.3 25,974 + GFF7068 0.33 +0.3 25,974 + GFF7068 0.33 -1.3 25,974 + GFF7068 0.33 +0.2 25,974 + GFF7068 0.33 -0.1 25,975 - GFF7068 0.33 -0.3 25,975 - GFF7068 0.33 -0.4 25,975 - GFF7068 0.33 +0.2 25,975 - GFF7068 0.33 -0.8 26,142 + GFF7068 0.72 +1.6 26,148 + GFF7068 0.74 -0.7 26,148 + GFF7068 0.74 +1.6 26,148 + GFF7068 0.74 -0.6 26,148 + GFF7068 0.74 +0.0 26,148 + GFF7068 0.74 +1.0 26,149 - GFF7068 0.74 -0.4 26,149 - GFF7068 0.74 -0.0 26,149 - GFF7068 0.74 +0.5 26,149 - GFF7068 0.74 -0.2 26,149 - GFF7068 0.74 -0.7 26,149 - GFF7068 0.74 +1.6 26,149 - GFF7068 0.74 +0.1 26,149 - GFF7068 0.74 -0.4 26,149 - GFF7068 0.74 +0.1 26,193 + GFF7068 0.84 -0.9 26,193 + GFF7068 0.84 -0.0 26,332 + GFF7069 0.13 -0.7 26,332 + GFF7069 0.13 +2.6 26,389 + GFF7069 0.26 -0.5 26,389 + GFF7069 0.26 -0.0 26,390 - GFF7069 0.26 -0.4 26,471 - GFF7069 0.43 +0.5 26,608 + GFF7069 0.72 +0.6 26,609 - GFF7069 0.73 +1.1 26,725 - -0.5 27,147 + -0.4 27,147 + +0.0 27,147 + +0.4 27,147 + -0.2 27,148 - +0.2 27,148 - +0.6 27,148 - -0.5 27,153 + +0.1 27,154 - -1.1 27,154 - -0.4 27,154 - +0.0 27,154 - +0.0 27,154 - -0.0 27,213 + +0.2 27,213 + +0.9 27,213 + -1.5 27,213 + -1.0 27,213 + +0.0 27,213 + -0.8 27,214 - -0.4 27,214 - -0.1 27,214 - -1.8 27,214 - +0.3 27,462 + GFF7071 0.61 +0.0 27,658 + +0.4 27,695 - +0.5 27,695 - -0.3
Or see this region's nucleotide sequence