Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5 and GFF6 overlap by 37 nucleotides GFF6 and GFF7 overlap by 4 nucleotides GFF7 and GFF8 overlap by 4 nucleotides
GFF5 - FIG00537881: hypothetical protein, at 4,278 to 5,351
GFF5
GFF6 - hypothetical protein, at 5,315 to 5,710
GFF6
GFF7 - no description, at 5,707 to 6,081
GFF7
GFF8 - RND efflux system, outer membrane lipoprotein, NodT family, at 6,078 to 7,592
GFF8
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.755 kb on + strand, within GFF5 at 4.755 kb on + strand, within GFF5 at 4.755 kb on + strand, within GFF5 at 4.756 kb on - strand, within GFF5 at 4.756 kb on - strand, within GFF5 at 4.756 kb on - strand, within GFF5 at 4.986 kb on + strand, within GFF5 at 5.010 kb on + strand, within GFF5 at 5.010 kb on + strand, within GFF5 at 5.011 kb on - strand, within GFF5 at 5.011 kb on - strand, within GFF5 at 5.028 kb on + strand, within GFF5 at 5.058 kb on + strand, within GFF5 at 5.511 kb on + strand, within GFF6 at 5.512 kb on - strand, within GFF6 at 5.512 kb on - strand, within GFF6 at 5.640 kb on + strand, within GFF6 at 5.656 kb on + strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.756 kb on + strand, within GFF7 at 5.849 kb on + strand, within GFF7 at 5.850 kb on - strand, within GFF7 at 5.870 kb on + strand, within GFF7 at 5.870 kb on + strand, within GFF7 at 5.871 kb on - strand, within GFF7 at 5.871 kb on - strand, within GFF7 at 5.871 kb on - strand, within GFF7 at 6.002 kb on + strand, within GFF7 at 6.002 kb on + strand, within GFF7 at 6.002 kb on + strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.308 kb on + strand, within GFF8 at 6.308 kb on + strand, within GFF8 at 6.309 kb on - strand, within GFF8 at 6.434 kb on - strand, within GFF8 at 6.574 kb on + strand, within GFF8 at 6.575 kb on - strand, within GFF8 at 6.575 kb on - strand, within GFF8 at 6.575 kb on - strand, within GFF8 at 6.589 kb on + strand, within GFF8 at 6.589 kb on + strand, within GFF8 at 6.590 kb on - strand, within GFF8 at 6.590 kb on - strand, within GFF8 at 6.590 kb on - strand, within GFF8 at 6.934 kb on + strand, within GFF8 at 6.935 kb on - strand, within GFF8
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 4,755 + GFF5 0.44 -1.1 4,755 + GFF5 0.44 -0.2 4,755 + GFF5 0.44 -0.2 4,756 - GFF5 0.45 -0.3 4,756 - GFF5 0.45 +0.1 4,756 - GFF5 0.45 -0.4 4,986 + GFF5 0.66 +1.0 5,010 + GFF5 0.68 -0.0 5,010 + GFF5 0.68 -0.1 5,011 - GFF5 0.68 +0.2 5,011 - GFF5 0.68 +1.9 5,028 + GFF5 0.70 -0.1 5,058 + GFF5 0.73 -0.2 5,511 + GFF6 0.49 -0.2 5,512 - GFF6 0.50 +0.5 5,512 - GFF6 0.50 -0.7 5,640 + GFF6 0.82 -0.1 5,656 + GFF6 0.86 -0.0 5,657 - GFF6 0.86 -0.9 5,657 - GFF6 0.86 -0.2 5,657 - GFF6 0.86 +1.3 5,657 - GFF6 0.86 -0.5 5,657 - GFF6 0.86 -0.9 5,756 + GFF7 0.13 -0.2 5,849 + GFF7 0.38 -0.4 5,850 - GFF7 0.38 +0.3 5,870 + GFF7 0.43 -0.7 5,870 + GFF7 0.43 -1.4 5,871 - GFF7 0.44 -0.3 5,871 - GFF7 0.44 -0.8 5,871 - GFF7 0.44 +0.6 6,002 + GFF7 0.79 -0.9 6,002 + GFF7 0.79 -0.8 6,002 + GFF7 0.79 +0.7 6,003 - GFF7 0.79 +2.0 6,003 - GFF7 0.79 -0.5 6,003 - GFF7 0.79 -1.4 6,003 - GFF7 0.79 -2.0 6,003 - GFF7 0.79 -0.2 6,308 + GFF8 0.15 -0.2 6,308 + GFF8 0.15 -1.9 6,309 - GFF8 0.15 -0.2 6,434 - GFF8 0.23 -0.4 6,574 + GFF8 0.33 -0.4 6,575 - GFF8 0.33 -0.0 6,575 - GFF8 0.33 +0.0 6,575 - GFF8 0.33 -0.8 6,589 + GFF8 0.34 +0.4 6,589 + GFF8 0.34 -0.8 6,590 - GFF8 0.34 -0.1 6,590 - GFF8 0.34 +0.9 6,590 - GFF8 0.34 -0.8 6,934 + GFF8 0.57 -0.6 6,935 - GFF8 0.57 -0.5
Or see this region's nucleotide sequence