Strain Fitness in Variovorax sp. SCN45 around GFF6988

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6986 and GFF6987 are separated by 37 nucleotidesGFF6987 and GFF6988 overlap by 4 nucleotidesGFF6988 and GFF6989 are separated by 55 nucleotidesGFF6989 and GFF6990 overlap by 1 nucleotides GFF6986 - hypothetical protein, at 5,025 to 5,522 GFF6986 GFF6987 - hypothetical protein, at 5,560 to 6,498 GFF6987 GFF6988 - Flagellar hook protein FlgE, at 6,495 to 7,703 GFF6988 GFF6989 - Flagellar basal-body rod modification protein FlgD, at 7,759 to 8,160 GFF6989 GFF6990 - hypothetical protein, at 8,160 to 8,591 GFF6990 Position (kb) 6 7 8Strain fitness (log2 ratio) -1 0 1at 5.640 kb on + strandat 5.641 kb on - strandat 6.542 kb on + strandat 6.543 kb on - strandat 6.964 kb on + strand, within GFF6988at 6.964 kb on + strand, within GFF6988at 7.379 kb on - strand, within GFF6988at 7.379 kb on - strand, within GFF6988at 8.060 kb on + strand, within GFF6989at 8.060 kb on + strand, within GFF6989at 8.299 kb on + strand, within GFF6990

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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5,640 + +0.2
5,641 - +0.9
6,542 + -0.6
6,543 - +0.2
6,964 + GFF6988 0.39 -0.8
6,964 + GFF6988 0.39 -1.1
7,379 - GFF6988 0.73 -1.5
7,379 - GFF6988 0.73 -0.4
8,060 + GFF6989 0.75 -0.3
8,060 + GFF6989 0.75 +0.8
8,299 + GFF6990 0.32 -0.2

Or see this region's nucleotide sequence