Strain Fitness in Variovorax sp. SCN45 around GFF6952

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6951 and GFF6952 are separated by 21 nucleotidesGFF6952 and GFF6953 are separated by 7 nucleotides GFF6951 - Alcohol dehydrogenase (EC 1.1.1.1), at 27,140 to 28,129 GFF6951 GFF6952 - Metallo-beta-lactamase family protein, RNA-specific, at 28,151 to 29,503 GFF6952 GFF6953 - Universal stress protein UspA and related nucleotide-binding proteins, at 29,511 to 30,335 GFF6953 Position (kb) 28 29 30Strain fitness (log2 ratio) -1 0 1at 27.168 kb on + strandat 27.168 kb on + strandat 27.169 kb on - strandat 27.400 kb on - strand, within GFF6951at 27.459 kb on + strand, within GFF6951at 27.460 kb on - strand, within GFF6951at 27.643 kb on + strand, within GFF6951at 27.644 kb on - strand, within GFF6951at 27.644 kb on - strand, within GFF6951at 27.646 kb on - strand, within GFF6951at 27.646 kb on - strand, within GFF6951at 27.734 kb on - strand, within GFF6951at 27.734 kb on - strand, within GFF6951at 27.734 kb on - strand, within GFF6951at 27.734 kb on - strand, within GFF6951at 27.793 kb on + strand, within GFF6951at 28.049 kb on + strandat 28.050 kb on - strandat 28.368 kb on + strand, within GFF6952at 28.369 kb on - strand, within GFF6952at 28.369 kb on - strand, within GFF6952at 28.650 kb on + strand, within GFF6952at 28.650 kb on + strand, within GFF6952at 28.651 kb on - strand, within GFF6952at 28.659 kb on + strand, within GFF6952at 28.659 kb on + strand, within GFF6952at 28.660 kb on - strand, within GFF6952at 28.878 kb on + strand, within GFF6952at 28.878 kb on + strand, within GFF6952at 28.878 kb on + strand, within GFF6952at 28.879 kb on - strand, within GFF6952at 28.879 kb on - strand, within GFF6952at 28.879 kb on - strand, within GFF6952at 28.899 kb on + strand, within GFF6952at 28.899 kb on + strand, within GFF6952at 28.900 kb on - strand, within GFF6952at 28.900 kb on - strand, within GFF6952at 29.018 kb on + strand, within GFF6952at 29.018 kb on + strand, within GFF6952at 29.018 kb on + strand, within GFF6952at 29.018 kb on + strand, within GFF6952at 29.019 kb on - strand, within GFF6952at 29.019 kb on - strand, within GFF6952at 29.130 kb on + strand, within GFF6952at 29.131 kb on - strand, within GFF6952at 29.131 kb on - strand, within GFF6952at 29.295 kb on - strand, within GFF6952at 29.728 kb on + strand, within GFF6953at 29.729 kb on - strand, within GFF6953at 29.729 kb on - strand, within GFF6953at 29.899 kb on + strand, within GFF6953at 30.019 kb on + strand, within GFF6953at 30.019 kb on + strand, within GFF6953at 30.019 kb on + strand, within GFF6953at 30.019 kb on + strand, within GFF6953at 30.019 kb on + strand, within GFF6953at 30.020 kb on - strand, within GFF6953at 30.020 kb on - strand, within GFF6953at 30.020 kb on - strand, within GFF6953at 30.022 kb on - strand, within GFF6953at 30.187 kb on + strand, within GFF6953at 30.187 kb on + strand, within GFF6953

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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27,168 + +0.4
27,168 + -0.2
27,169 - -0.1
27,400 - GFF6951 0.26 +1.4
27,459 + GFF6951 0.32 +0.1
27,460 - GFF6951 0.32 -1.4
27,643 + GFF6951 0.51 +0.2
27,644 - GFF6951 0.51 -0.9
27,644 - GFF6951 0.51 -0.4
27,646 - GFF6951 0.51 +0.5
27,646 - GFF6951 0.51 -0.4
27,734 - GFF6951 0.60 +0.9
27,734 - GFF6951 0.60 +0.4
27,734 - GFF6951 0.60 -0.3
27,734 - GFF6951 0.60 +0.8
27,793 + GFF6951 0.66 -0.4
28,049 + -0.9
28,050 - -0.2
28,368 + GFF6952 0.16 -0.2
28,369 - GFF6952 0.16 +0.5
28,369 - GFF6952 0.16 +0.4
28,650 + GFF6952 0.37 -0.6
28,650 + GFF6952 0.37 -0.7
28,651 - GFF6952 0.37 -0.5
28,659 + GFF6952 0.38 +0.9
28,659 + GFF6952 0.38 -1.2
28,660 - GFF6952 0.38 +0.8
28,878 + GFF6952 0.54 +0.0
28,878 + GFF6952 0.54 +1.1
28,878 + GFF6952 0.54 -1.4
28,879 - GFF6952 0.54 -0.9
28,879 - GFF6952 0.54 -0.3
28,879 - GFF6952 0.54 +0.8
28,899 + GFF6952 0.55 -0.1
28,899 + GFF6952 0.55 -1.3
28,900 - GFF6952 0.55 +0.2
28,900 - GFF6952 0.55 +0.6
29,018 + GFF6952 0.64 -0.2
29,018 + GFF6952 0.64 -0.8
29,018 + GFF6952 0.64 +0.1
29,018 + GFF6952 0.64 +1.3
29,019 - GFF6952 0.64 -0.1
29,019 - GFF6952 0.64 -0.4
29,130 + GFF6952 0.72 -0.3
29,131 - GFF6952 0.72 -0.7
29,131 - GFF6952 0.72 +0.3
29,295 - GFF6952 0.85 -0.6
29,728 + GFF6953 0.26 -0.4
29,729 - GFF6953 0.26 -0.6
29,729 - GFF6953 0.26 -0.1
29,899 + GFF6953 0.47 -0.2
30,019 + GFF6953 0.62 -0.6
30,019 + GFF6953 0.62 +1.3
30,019 + GFF6953 0.62 +1.4
30,019 + GFF6953 0.62 -0.6
30,019 + GFF6953 0.62 -0.5
30,020 - GFF6953 0.62 -0.7
30,020 - GFF6953 0.62 +1.4
30,020 - GFF6953 0.62 +0.1
30,022 - GFF6953 0.62 -0.6
30,187 + GFF6953 0.82 +0.1
30,187 + GFF6953 0.82 -0.4

Or see this region's nucleotide sequence