Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6937 and GFF6938 overlap by 4 nucleotides GFF6938 and GFF6939 overlap by 4 nucleotides
GFF6937 - Membrane protein, at 11,760 to 12,845
GFF6937
GFF6938 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 12,842 to 14,341
GFF6938
GFF6939 - ABC-type antimicrobial peptide transport system, permease component, at 14,338 to 15,480
GFF6939
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 11.862 kb on + strand at 11.863 kb on - strand at 11.884 kb on - strand, within GFF6937 at 11.899 kb on - strand, within GFF6937 at 11.953 kb on - strand, within GFF6937 at 12.222 kb on + strand, within GFF6937 at 12.322 kb on - strand, within GFF6937 at 12.351 kb on + strand, within GFF6937 at 12.351 kb on + strand, within GFF6937 at 12.351 kb on + strand, within GFF6937 at 12.378 kb on + strand, within GFF6937 at 12.378 kb on + strand, within GFF6937 at 12.379 kb on - strand, within GFF6937 at 12.400 kb on - strand, within GFF6937 at 12.429 kb on + strand, within GFF6937 at 12.429 kb on + strand, within GFF6937 at 12.489 kb on + strand, within GFF6937 at 12.490 kb on - strand, within GFF6937 at 12.490 kb on - strand, within GFF6937 at 12.490 kb on - strand, within GFF6937 at 12.519 kb on + strand, within GFF6937 at 12.519 kb on + strand, within GFF6937 at 12.585 kb on + strand, within GFF6937 at 12.586 kb on - strand, within GFF6937 at 12.586 kb on - strand, within GFF6937 at 12.586 kb on - strand, within GFF6937 at 12.586 kb on - strand, within GFF6937 at 12.700 kb on - strand, within GFF6937 at 12.700 kb on - strand, within GFF6937 at 12.700 kb on - strand, within GFF6937 at 12.700 kb on - strand, within GFF6937 at 12.804 kb on + strand at 12.804 kb on + strand at 12.804 kb on + strand at 12.972 kb on - strand at 13.277 kb on + strand, within GFF6938 at 13.277 kb on + strand, within GFF6938 at 13.277 kb on + strand, within GFF6938 at 13.311 kb on - strand, within GFF6938 at 13.311 kb on - strand, within GFF6938 at 13.451 kb on + strand, within GFF6938 at 13.451 kb on + strand, within GFF6938 at 13.452 kb on - strand, within GFF6938 at 13.547 kb on + strand, within GFF6938 at 13.547 kb on + strand, within GFF6938 at 13.911 kb on - strand, within GFF6938 at 14.175 kb on - strand, within GFF6938 at 14.345 kb on - strand at 14.486 kb on - strand, within GFF6939 at 14.572 kb on + strand, within GFF6939 at 14.573 kb on - strand, within GFF6939 at 14.611 kb on + strand, within GFF6939 at 14.611 kb on + strand, within GFF6939 at 14.612 kb on - strand, within GFF6939 at 14.612 kb on - strand, within GFF6939 at 14.612 kb on - strand, within GFF6939 at 14.665 kb on + strand, within GFF6939 at 14.665 kb on + strand, within GFF6939 at 14.666 kb on - strand, within GFF6939 at 14.698 kb on - strand, within GFF6939 at 14.698 kb on - strand, within GFF6939 at 14.914 kb on + strand, within GFF6939 at 14.932 kb on + strand, within GFF6939 at 14.932 kb on + strand, within GFF6939 at 14.962 kb on + strand, within GFF6939 at 15.076 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.079 kb on + strand, within GFF6939 at 15.080 kb on - strand, within GFF6939 at 15.080 kb on - strand, within GFF6939 at 15.080 kb on - strand, within GFF6939 at 15.085 kb on + strand, within GFF6939 at 15.085 kb on + strand, within GFF6939 at 15.086 kb on - strand, within GFF6939 at 15.086 kb on - strand, within GFF6939 at 15.169 kb on + strand, within GFF6939 at 15.170 kb on - strand, within GFF6939 at 15.170 kb on - strand, within GFF6939 at 15.170 kb on - strand, within GFF6939
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 11,862 + +1.1 11,863 - -0.9 11,884 - GFF6937 0.11 +0.4 11,899 - GFF6937 0.13 +0.1 11,953 - GFF6937 0.18 +0.2 12,222 + GFF6937 0.43 -0.3 12,322 - GFF6937 0.52 -0.2 12,351 + GFF6937 0.54 +0.0 12,351 + GFF6937 0.54 +1.1 12,351 + GFF6937 0.54 +0.2 12,378 + GFF6937 0.57 -0.8 12,378 + GFF6937 0.57 -0.3 12,379 - GFF6937 0.57 +0.9 12,400 - GFF6937 0.59 -0.6 12,429 + GFF6937 0.62 +0.7 12,429 + GFF6937 0.62 -0.4 12,489 + GFF6937 0.67 -0.1 12,490 - GFF6937 0.67 +0.4 12,490 - GFF6937 0.67 -0.3 12,490 - GFF6937 0.67 +0.2 12,519 + GFF6937 0.70 +0.7 12,519 + GFF6937 0.70 -0.1 12,585 + GFF6937 0.76 -0.9 12,586 - GFF6937 0.76 +0.4 12,586 - GFF6937 0.76 +0.2 12,586 - GFF6937 0.76 -0.3 12,586 - GFF6937 0.76 -0.3 12,700 - GFF6937 0.87 +0.6 12,700 - GFF6937 0.87 -0.6 12,700 - GFF6937 0.87 -0.2 12,700 - GFF6937 0.87 +0.1 12,804 + -0.9 12,804 + -0.4 12,804 + -0.1 12,972 - +0.6 13,277 + GFF6938 0.29 -0.2 13,277 + GFF6938 0.29 -0.4 13,277 + GFF6938 0.29 +1.8 13,311 - GFF6938 0.31 -0.6 13,311 - GFF6938 0.31 -0.3 13,451 + GFF6938 0.41 -1.1 13,451 + GFF6938 0.41 -0.8 13,452 - GFF6938 0.41 -0.0 13,547 + GFF6938 0.47 +0.4 13,547 + GFF6938 0.47 +0.3 13,911 - GFF6938 0.71 +0.4 14,175 - GFF6938 0.89 +0.0 14,345 - -0.9 14,486 - GFF6939 0.13 +0.3 14,572 + GFF6939 0.20 -0.8 14,573 - GFF6939 0.21 -0.9 14,611 + GFF6939 0.24 +1.4 14,611 + GFF6939 0.24 -0.2 14,612 - GFF6939 0.24 -0.9 14,612 - GFF6939 0.24 +0.6 14,612 - GFF6939 0.24 +0.9 14,665 + GFF6939 0.29 +0.4 14,665 + GFF6939 0.29 -0.6 14,666 - GFF6939 0.29 -1.6 14,698 - GFF6939 0.31 +0.1 14,698 - GFF6939 0.31 -0.1 14,914 + GFF6939 0.50 -1.1 14,932 + GFF6939 0.52 -0.1 14,932 + GFF6939 0.52 -0.5 14,962 + GFF6939 0.55 +0.4 15,076 + GFF6939 0.65 -0.0 15,079 + GFF6939 0.65 +0.2 15,079 + GFF6939 0.65 +0.4 15,079 + GFF6939 0.65 -0.3 15,079 + GFF6939 0.65 +0.6 15,079 + GFF6939 0.65 -0.3 15,080 - GFF6939 0.65 -0.1 15,080 - GFF6939 0.65 -0.4 15,080 - GFF6939 0.65 -1.5 15,085 + GFF6939 0.65 +0.6 15,085 + GFF6939 0.65 -1.8 15,086 - GFF6939 0.65 +0.9 15,086 - GFF6939 0.65 -1.1 15,169 + GFF6939 0.73 +0.1 15,170 - GFF6939 0.73 -0.4 15,170 - GFF6939 0.73 -1.1 15,170 - GFF6939 0.73 -0.1
Or see this region's nucleotide sequence