Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6899 and GFF6900 overlap by 4 nucleotides GFF6900 and GFF6901 overlap by 11 nucleotides GFF6901 and GFF6902 are separated by 108 nucleotides
GFF6899 - Biofilm PGA synthesis deacetylase PgaB (EC 3.-), at 33,092 to 35,161
GFF6899
GFF6900 - Biofilm PGA synthesis N-glycosyltransferase PgaC (EC 2.4.-.-), at 35,158 to 36,435
GFF6900
GFF6901 - no description, at 36,425 to 37,009
GFF6901
GFF6902 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 37,118 to 37,915
GFF6902
Position (kb) 35
36
37 Strain fitness (log2 ratio) -1
0
1
2
3 at 34.178 kb on + strand, within GFF6899 at 34.178 kb on + strand, within GFF6899 at 34.178 kb on + strand, within GFF6899 at 34.179 kb on - strand, within GFF6899 at 34.179 kb on - strand, within GFF6899 at 34.179 kb on - strand, within GFF6899 at 34.217 kb on + strand, within GFF6899 at 34.217 kb on + strand, within GFF6899 at 34.217 kb on + strand, within GFF6899 at 34.217 kb on + strand, within GFF6899 at 34.217 kb on + strand, within GFF6899 at 34.217 kb on + strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.218 kb on - strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.304 kb on + strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.305 kb on - strand, within GFF6899 at 34.403 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.457 kb on + strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.458 kb on - strand, within GFF6899 at 34.475 kb on + strand, within GFF6899 at 34.475 kb on + strand, within GFF6899 at 34.476 kb on - strand, within GFF6899 at 34.476 kb on - strand, within GFF6899 at 34.559 kb on + strand, within GFF6899 at 34.559 kb on + strand, within GFF6899 at 34.559 kb on + strand, within GFF6899 at 34.559 kb on + strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.560 kb on - strand, within GFF6899 at 34.646 kb on + strand, within GFF6899 at 34.647 kb on - strand, within GFF6899 at 34.724 kb on + strand, within GFF6899 at 34.724 kb on + strand, within GFF6899 at 34.725 kb on - strand, within GFF6899 at 34.725 kb on - strand, within GFF6899 at 34.725 kb on - strand, within GFF6899 at 34.775 kb on + strand, within GFF6899 at 34.775 kb on + strand, within GFF6899 at 34.775 kb on + strand, within GFF6899 at 34.775 kb on + strand, within GFF6899 at 34.776 kb on - strand, within GFF6899 at 34.776 kb on - strand, within GFF6899 at 34.776 kb on - strand, within GFF6899 at 34.776 kb on - strand, within GFF6899 at 34.776 kb on - strand, within GFF6899 at 34.776 kb on - strand, within GFF6899 at 34.796 kb on + strand, within GFF6899 at 34.796 kb on + strand, within GFF6899 at 34.796 kb on + strand, within GFF6899 at 34.802 kb on + strand, within GFF6899 at 34.802 kb on + strand, within GFF6899 at 34.802 kb on + strand, within GFF6899 at 34.802 kb on + strand, within GFF6899 at 34.802 kb on + strand, within GFF6899 at 34.803 kb on - strand, within GFF6899 at 35.021 kb on + strand at 35.022 kb on - strand at 35.022 kb on - strand at 35.024 kb on + strand at 35.024 kb on + strand at 35.024 kb on + strand at 35.024 kb on + strand at 35.025 kb on - strand at 35.218 kb on + strand at 35.218 kb on + strand at 35.218 kb on + strand at 35.218 kb on + strand at 35.218 kb on + strand at 35.218 kb on + strand at 35.218 kb on + strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.219 kb on - strand at 35.222 kb on - strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.239 kb on + strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.240 kb on - strand at 35.422 kb on + strand, within GFF6900 at 35.422 kb on + strand, within GFF6900 at 35.422 kb on + strand, within GFF6900 at 35.422 kb on + strand, within GFF6900 at 35.422 kb on + strand, within GFF6900 at 35.422 kb on + strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.423 kb on - strand, within GFF6900 at 35.494 kb on + strand, within GFF6900 at 35.494 kb on + strand, within GFF6900 at 35.494 kb on + strand, within GFF6900 at 35.495 kb on - strand, within GFF6900 at 35.495 kb on - strand, within GFF6900 at 35.581 kb on + strand, within GFF6900 at 35.581 kb on + strand, within GFF6900 at 35.581 kb on + strand, within GFF6900 at 35.581 kb on + strand, within GFF6900 at 35.581 kb on + strand, within GFF6900 at 35.582 kb on - strand, within GFF6900 at 35.582 kb on - strand, within GFF6900 at 35.582 kb on - strand, within GFF6900 at 35.582 kb on - strand, within GFF6900 at 35.582 kb on - strand, within GFF6900 at 35.582 kb on - strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.076 kb on + strand, within GFF6900 at 36.077 kb on - strand, within GFF6900 at 36.077 kb on - strand, within GFF6900 at 36.077 kb on - strand, within GFF6900 at 36.077 kb on - strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.085 kb on + strand, within GFF6900 at 36.086 kb on - strand, within GFF6900 at 36.086 kb on - strand, within GFF6900 at 36.086 kb on - strand, within GFF6900 at 36.110 kb on - strand, within GFF6900 at 36.110 kb on - strand, within GFF6900 at 36.265 kb on + strand, within GFF6900 at 36.266 kb on - strand, within GFF6900 at 36.266 kb on - strand, within GFF6900 at 36.286 kb on + strand, within GFF6900 at 36.286 kb on + strand, within GFF6900 at 36.287 kb on - strand, within GFF6900 at 36.287 kb on - strand, within GFF6900 at 36.371 kb on + strand at 36.371 kb on + strand at 36.371 kb on + strand at 36.371 kb on + strand at 36.371 kb on + strand at 36.371 kb on + strand at 36.372 kb on - strand at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.605 kb on + strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.606 kb on - strand, within GFF6901 at 36.680 kb on + strand, within GFF6901 at 36.680 kb on + strand, within GFF6901 at 36.680 kb on + strand, within GFF6901 at 36.681 kb on - strand, within GFF6901 at 36.681 kb on - strand, within GFF6901 at 36.731 kb on + strand, within GFF6901 at 36.731 kb on + strand, within GFF6901 at 36.731 kb on + strand, within GFF6901 at 36.731 kb on + strand, within GFF6901 at 36.732 kb on - strand, within GFF6901 at 36.854 kb on + strand, within GFF6901 at 36.854 kb on + strand, within GFF6901 at 36.855 kb on - strand, within GFF6901 at 36.855 kb on - strand, within GFF6901 at 36.855 kb on - strand, within GFF6901 at 36.855 kb on - strand, within GFF6901 at 36.855 kb on - strand, within GFF6901 at 36.855 kb on - strand, within GFF6901 at 37.146 kb on + strand at 37.146 kb on + strand at 37.146 kb on + strand at 37.146 kb on + strand at 37.146 kb on + strand at 37.146 kb on + strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.147 kb on - strand at 37.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 34,178 + GFF6899 0.52 +0.8 34,178 + GFF6899 0.52 +0.4 34,178 + GFF6899 0.52 +0.6 34,179 - GFF6899 0.53 +0.4 34,179 - GFF6899 0.53 +0.7 34,179 - GFF6899 0.53 +2.0 34,217 + GFF6899 0.54 +0.8 34,217 + GFF6899 0.54 -0.0 34,217 + GFF6899 0.54 +1.4 34,217 + GFF6899 0.54 +0.7 34,217 + GFF6899 0.54 +1.1 34,217 + GFF6899 0.54 +1.3 34,218 - GFF6899 0.54 +0.2 34,218 - GFF6899 0.54 +0.5 34,218 - GFF6899 0.54 +1.9 34,218 - GFF6899 0.54 +0.9 34,218 - GFF6899 0.54 +0.5 34,218 - GFF6899 0.54 +0.3 34,218 - GFF6899 0.54 +0.4 34,304 + GFF6899 0.59 +0.5 34,304 + GFF6899 0.59 +0.8 34,304 + GFF6899 0.59 +0.8 34,304 + GFF6899 0.59 -0.7 34,304 + GFF6899 0.59 +0.7 34,304 + GFF6899 0.59 +0.5 34,304 + GFF6899 0.59 +1.0 34,304 + GFF6899 0.59 -0.5 34,304 + GFF6899 0.59 +0.0 34,304 + GFF6899 0.59 +1.1 34,304 + GFF6899 0.59 +0.2 34,304 + GFF6899 0.59 +0.2 34,304 + GFF6899 0.59 +0.4 34,305 - GFF6899 0.59 +0.0 34,305 - GFF6899 0.59 +1.0 34,305 - GFF6899 0.59 +1.2 34,305 - GFF6899 0.59 -0.2 34,305 - GFF6899 0.59 +1.6 34,305 - GFF6899 0.59 +0.7 34,305 - GFF6899 0.59 -0.2 34,305 - GFF6899 0.59 +1.7 34,305 - GFF6899 0.59 +0.2 34,403 + GFF6899 0.63 +0.8 34,457 + GFF6899 0.66 +1.4 34,457 + GFF6899 0.66 +0.8 34,457 + GFF6899 0.66 +0.6 34,457 + GFF6899 0.66 +0.1 34,457 + GFF6899 0.66 +0.8 34,457 + GFF6899 0.66 +0.3 34,457 + GFF6899 0.66 -0.0 34,457 + GFF6899 0.66 +0.8 34,457 + GFF6899 0.66 -0.5 34,457 + GFF6899 0.66 +0.6 34,458 - GFF6899 0.66 +1.8 34,458 - GFF6899 0.66 +0.8 34,458 - GFF6899 0.66 +0.5 34,458 - GFF6899 0.66 +0.6 34,458 - GFF6899 0.66 +1.1 34,458 - GFF6899 0.66 -0.2 34,458 - GFF6899 0.66 +0.9 34,458 - GFF6899 0.66 -0.2 34,475 + GFF6899 0.67 +1.0 34,475 + GFF6899 0.67 +0.5 34,476 - GFF6899 0.67 +0.4 34,476 - GFF6899 0.67 -0.7 34,559 + GFF6899 0.71 +1.1 34,559 + GFF6899 0.71 +0.4 34,559 + GFF6899 0.71 +0.9 34,559 + GFF6899 0.71 +0.3 34,560 - GFF6899 0.71 +0.8 34,560 - GFF6899 0.71 +0.6 34,560 - GFF6899 0.71 +0.4 34,560 - GFF6899 0.71 +0.8 34,560 - GFF6899 0.71 +0.8 34,560 - GFF6899 0.71 +0.4 34,560 - GFF6899 0.71 +0.4 34,560 - GFF6899 0.71 +1.0 34,560 - GFF6899 0.71 +0.3 34,560 - GFF6899 0.71 +0.7 34,646 + GFF6899 0.75 +0.7 34,647 - GFF6899 0.75 +0.8 34,724 + GFF6899 0.79 +1.4 34,724 + GFF6899 0.79 +1.2 34,725 - GFF6899 0.79 +1.2 34,725 - GFF6899 0.79 +1.4 34,725 - GFF6899 0.79 +0.5 34,775 + GFF6899 0.81 +0.8 34,775 + GFF6899 0.81 +0.8 34,775 + GFF6899 0.81 +0.8 34,775 + GFF6899 0.81 +1.8 34,776 - GFF6899 0.81 -0.8 34,776 - GFF6899 0.81 +1.4 34,776 - GFF6899 0.81 +0.7 34,776 - GFF6899 0.81 +0.3 34,776 - GFF6899 0.81 +0.6 34,776 - GFF6899 0.81 +1.7 34,796 + GFF6899 0.82 +0.3 34,796 + GFF6899 0.82 -0.4 34,796 + GFF6899 0.82 +0.8 34,802 + GFF6899 0.83 +0.9 34,802 + GFF6899 0.83 +0.2 34,802 + GFF6899 0.83 +0.7 34,802 + GFF6899 0.83 +2.2 34,802 + GFF6899 0.83 -0.3 34,803 - GFF6899 0.83 -0.8 35,021 + +0.3 35,022 - +0.7 35,022 - +0.6 35,024 + +0.3 35,024 + +0.2 35,024 + +0.4 35,024 + +0.5 35,025 - +0.5 35,218 + +1.1 35,218 + +1.9 35,218 + +0.6 35,218 + +2.0 35,218 + +0.2 35,218 + +0.9 35,218 + +1.6 35,219 - +0.8 35,219 - +0.2 35,219 - +0.3 35,219 - +1.6 35,219 - +1.8 35,219 - -1.0 35,219 - +0.5 35,219 - +0.3 35,222 - +0.4 35,239 + +0.3 35,239 + +1.1 35,239 + +0.5 35,239 + +1.1 35,239 + +1.0 35,239 + +1.0 35,239 + -1.6 35,239 + +0.4 35,239 + +0.8 35,239 + +0.6 35,239 + +1.1 35,240 - +0.4 35,240 - +1.1 35,240 - +0.4 35,240 - +0.7 35,240 - -0.5 35,240 - +1.8 35,240 - +0.1 35,240 - +0.2 35,240 - +2.8 35,240 - +1.0 35,240 - +0.9 35,240 - -0.1 35,240 - +0.5 35,240 - +0.3 35,240 - +1.0 35,240 - +1.2 35,240 - -0.3 35,422 + GFF6900 0.21 +0.6 35,422 + GFF6900 0.21 +1.0 35,422 + GFF6900 0.21 +2.6 35,422 + GFF6900 0.21 +0.5 35,422 + GFF6900 0.21 +0.5 35,422 + GFF6900 0.21 +1.6 35,423 - GFF6900 0.21 +1.1 35,423 - GFF6900 0.21 +1.8 35,423 - GFF6900 0.21 -0.2 35,423 - GFF6900 0.21 +0.2 35,423 - GFF6900 0.21 +0.7 35,423 - GFF6900 0.21 +0.0 35,423 - GFF6900 0.21 +0.5 35,494 + GFF6900 0.26 +1.0 35,494 + GFF6900 0.26 +0.4 35,494 + GFF6900 0.26 +2.3 35,495 - GFF6900 0.26 +1.1 35,495 - GFF6900 0.26 +1.5 35,581 + GFF6900 0.33 +0.7 35,581 + GFF6900 0.33 +0.8 35,581 + GFF6900 0.33 +0.6 35,581 + GFF6900 0.33 +1.2 35,581 + GFF6900 0.33 +0.6 35,582 - GFF6900 0.33 -0.4 35,582 - GFF6900 0.33 +0.7 35,582 - GFF6900 0.33 +0.1 35,582 - GFF6900 0.33 +0.3 35,582 - GFF6900 0.33 +0.4 35,582 - GFF6900 0.33 +0.5 36,076 + GFF6900 0.72 -0.3 36,076 + GFF6900 0.72 +1.0 36,076 + GFF6900 0.72 +1.8 36,076 + GFF6900 0.72 -0.1 36,076 + GFF6900 0.72 +0.2 36,076 + GFF6900 0.72 +1.8 36,076 + GFF6900 0.72 +1.4 36,077 - GFF6900 0.72 +1.2 36,077 - GFF6900 0.72 +0.5 36,077 - GFF6900 0.72 -0.2 36,077 - GFF6900 0.72 +1.4 36,085 + GFF6900 0.73 +0.9 36,085 + GFF6900 0.73 +0.8 36,085 + GFF6900 0.73 +1.2 36,085 + GFF6900 0.73 +0.4 36,085 + GFF6900 0.73 +1.8 36,085 + GFF6900 0.73 +1.2 36,085 + GFF6900 0.73 -0.5 36,085 + GFF6900 0.73 +0.2 36,085 + GFF6900 0.73 +1.4 36,085 + GFF6900 0.73 +0.7 36,086 - GFF6900 0.73 +0.5 36,086 - GFF6900 0.73 +0.5 36,086 - GFF6900 0.73 +0.4 36,110 - GFF6900 0.74 +1.8 36,110 - GFF6900 0.74 +1.0 36,265 + GFF6900 0.87 +0.6 36,266 - GFF6900 0.87 +1.3 36,266 - GFF6900 0.87 -1.0 36,286 + GFF6900 0.88 -1.2 36,286 + GFF6900 0.88 +0.5 36,287 - GFF6900 0.88 +0.9 36,287 - GFF6900 0.88 +0.6 36,371 + +1.0 36,371 + +0.7 36,371 + -0.4 36,371 + +0.9 36,371 + +0.9 36,371 + +0.3 36,372 - -0.1 36,605 + GFF6901 0.31 +0.1 36,605 + GFF6901 0.31 +0.8 36,605 + GFF6901 0.31 +0.8 36,605 + GFF6901 0.31 +0.1 36,605 + GFF6901 0.31 +2.4 36,605 + GFF6901 0.31 +0.3 36,605 + GFF6901 0.31 +1.3 36,605 + GFF6901 0.31 +0.6 36,605 + GFF6901 0.31 +1.1 36,605 + GFF6901 0.31 -0.1 36,605 + GFF6901 0.31 -0.3 36,605 + GFF6901 0.31 +1.6 36,606 - GFF6901 0.31 -0.5 36,606 - GFF6901 0.31 +0.3 36,606 - GFF6901 0.31 +0.7 36,606 - GFF6901 0.31 +0.7 36,606 - GFF6901 0.31 -0.2 36,606 - GFF6901 0.31 -0.2 36,606 - GFF6901 0.31 +0.4 36,680 + GFF6901 0.44 -0.1 36,680 + GFF6901 0.44 +0.4 36,680 + GFF6901 0.44 +0.8 36,681 - GFF6901 0.44 +0.8 36,681 - GFF6901 0.44 +0.6 36,731 + GFF6901 0.52 +0.2 36,731 + GFF6901 0.52 +1.8 36,731 + GFF6901 0.52 +0.1 36,731 + GFF6901 0.52 +0.2 36,732 - GFF6901 0.52 +0.9 36,854 + GFF6901 0.73 +0.2 36,854 + GFF6901 0.73 -0.8 36,855 - GFF6901 0.74 +0.3 36,855 - GFF6901 0.74 +1.1 36,855 - GFF6901 0.74 -0.1 36,855 - GFF6901 0.74 +0.4 36,855 - GFF6901 0.74 +0.7 36,855 - GFF6901 0.74 +2.0 37,146 + +1.8 37,146 + -0.1 37,146 + +0.2 37,146 + -0.5 37,146 + +0.9 37,146 + +0.2 37,147 - -0.5 37,147 - -0.6 37,147 - +0.4 37,147 - +0.3 37,147 - +0.1 37,147 - -0.3
Or see this region's nucleotide sequence