Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF681 and GFF682 overlap by 4 nucleotides GFF682 and GFF683 overlap by 12 nucleotides GFF683 and GFF684 are separated by 45 nucleotides
GFF681 - Hypothetical protein in cluster with At3g50560-like gene family, at 735,698 to 736,537
GFF681
GFF682 - 2-hydroxychromene-2-carboxylate isomerase family protein, at 736,534 to 737,139
GFF682
GFF683 - Transcriptional regulator, LysR family, at 737,128 to 738,048
GFF683
GFF684 - FIG00553873: hypothetical protein, at 738,094 to 739,074
GFF684
Position (kb) 737
738
739 Strain fitness (log2 ratio) -2
-1
0
1
2 at 736.193 kb on + strand, within GFF681 at 736.193 kb on + strand, within GFF681 at 736.193 kb on + strand, within GFF681 at 736.194 kb on - strand, within GFF681 at 736.194 kb on - strand, within GFF681 at 736.331 kb on + strand, within GFF681 at 736.331 kb on + strand, within GFF681 at 736.331 kb on + strand, within GFF681 at 736.332 kb on - strand, within GFF681 at 736.332 kb on - strand, within GFF681 at 736.332 kb on - strand, within GFF681 at 736.367 kb on + strand, within GFF681 at 736.367 kb on + strand, within GFF681 at 736.367 kb on + strand, within GFF681 at 736.367 kb on + strand, within GFF681 at 736.412 kb on + strand, within GFF681 at 736.413 kb on - strand, within GFF681 at 736.413 kb on - strand, within GFF681 at 736.443 kb on - strand, within GFF681 at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.573 kb on + strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.574 kb on - strand at 736.579 kb on + strand at 736.579 kb on + strand at 736.579 kb on + strand at 736.579 kb on + strand at 736.579 kb on + strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.580 kb on - strand at 736.720 kb on + strand, within GFF682 at 736.720 kb on + strand, within GFF682 at 736.720 kb on + strand, within GFF682 at 736.720 kb on + strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.721 kb on - strand, within GFF682 at 736.756 kb on + strand, within GFF682 at 736.757 kb on - strand, within GFF682 at 736.757 kb on - strand, within GFF682 at 737.222 kb on + strand, within GFF683 at 737.222 kb on + strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.223 kb on - strand, within GFF683 at 737.360 kb on + strand, within GFF683 at 737.361 kb on - strand, within GFF683 at 737.594 kb on + strand, within GFF683 at 737.595 kb on - strand, within GFF683 at 737.595 kb on - strand, within GFF683 at 738.349 kb on + strand, within GFF684 at 738.349 kb on + strand, within GFF684 at 738.349 kb on + strand, within GFF684 at 738.349 kb on + strand, within GFF684 at 738.349 kb on + strand, within GFF684 at 738.349 kb on + strand, within GFF684 at 738.350 kb on - strand, within GFF684 at 738.421 kb on + strand, within GFF684 at 738.422 kb on - strand, within GFF684 at 738.422 kb on - strand, within GFF684 at 738.422 kb on - strand, within GFF684 at 738.422 kb on - strand, within GFF684 at 738.658 kb on + strand, within GFF684 at 738.658 kb on + strand, within GFF684 at 738.659 kb on - strand, within GFF684 at 738.659 kb on - strand, within GFF684 at 738.659 kb on - strand, within GFF684 at 738.659 kb on - strand, within GFF684 at 738.659 kb on - strand, within GFF684 at 738.676 kb on + strand, within GFF684 at 738.676 kb on + strand, within GFF684 at 738.676 kb on + strand, within GFF684 at 738.676 kb on + strand, within GFF684 at 738.676 kb on + strand, within GFF684 at 738.677 kb on - strand, within GFF684 at 738.691 kb on + strand, within GFF684 at 738.691 kb on + strand, within GFF684 at 738.691 kb on + strand, within GFF684 at 738.748 kb on + strand, within GFF684 at 738.748 kb on + strand, within GFF684 at 738.748 kb on + strand, within GFF684 at 738.748 kb on + strand, within GFF684 at 738.748 kb on + strand, within GFF684 at 738.749 kb on - strand, within GFF684 at 738.749 kb on - strand, within GFF684
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 736,193 + GFF681 0.59 +0.2 736,193 + GFF681 0.59 -2.4 736,193 + GFF681 0.59 +0.1 736,194 - GFF681 0.59 -0.2 736,194 - GFF681 0.59 +0.1 736,331 + GFF681 0.75 -0.3 736,331 + GFF681 0.75 -0.0 736,331 + GFF681 0.75 -0.5 736,332 - GFF681 0.75 -1.1 736,332 - GFF681 0.75 -0.2 736,332 - GFF681 0.75 -1.2 736,367 + GFF681 0.80 -0.7 736,367 + GFF681 0.80 +0.5 736,367 + GFF681 0.80 +0.5 736,367 + GFF681 0.80 -0.1 736,412 + GFF681 0.85 -0.6 736,413 - GFF681 0.85 -0.4 736,413 - GFF681 0.85 +1.1 736,443 - GFF681 0.89 -0.3 736,573 + +1.9 736,573 + -0.2 736,573 + -0.2 736,573 + -1.3 736,573 + -0.5 736,573 + +1.7 736,573 + +0.4 736,573 + -0.7 736,573 + -0.7 736,573 + +0.5 736,573 + +1.1 736,573 + -0.1 736,573 + +0.1 736,573 + -0.2 736,573 + -0.0 736,574 - +1.0 736,574 - -0.0 736,574 - +0.2 736,574 - -0.0 736,574 - +0.7 736,574 - +0.1 736,574 - -1.5 736,574 - -0.5 736,574 - +0.3 736,574 - +0.1 736,574 - -1.2 736,574 - -0.3 736,574 - -2.5 736,579 + +0.2 736,579 + -0.2 736,579 + -1.0 736,579 + -0.5 736,579 + -0.6 736,580 - +0.0 736,580 - -0.7 736,580 - -0.0 736,580 - +2.1 736,580 - -2.0 736,580 - -0.3 736,720 + GFF682 0.31 -0.2 736,720 + GFF682 0.31 -1.6 736,720 + GFF682 0.31 -1.5 736,720 + GFF682 0.31 +0.6 736,721 - GFF682 0.31 -1.0 736,721 - GFF682 0.31 +0.0 736,721 - GFF682 0.31 -0.2 736,721 - GFF682 0.31 +0.3 736,721 - GFF682 0.31 -1.0 736,721 - GFF682 0.31 -0.2 736,756 + GFF682 0.37 +0.3 736,757 - GFF682 0.37 +0.3 736,757 - GFF682 0.37 -0.8 737,222 + GFF683 0.10 -0.3 737,222 + GFF683 0.10 +0.3 737,223 - GFF683 0.10 -0.5 737,223 - GFF683 0.10 +0.2 737,223 - GFF683 0.10 -0.0 737,223 - GFF683 0.10 +0.2 737,223 - GFF683 0.10 +1.1 737,360 + GFF683 0.25 -0.8 737,361 - GFF683 0.25 -1.8 737,594 + GFF683 0.51 +1.2 737,595 - GFF683 0.51 +0.2 737,595 - GFF683 0.51 +0.4 738,349 + GFF684 0.26 -0.7 738,349 + GFF684 0.26 -1.0 738,349 + GFF684 0.26 -0.1 738,349 + GFF684 0.26 +0.1 738,349 + GFF684 0.26 -0.2 738,349 + GFF684 0.26 -0.4 738,350 - GFF684 0.26 +0.3 738,421 + GFF684 0.33 -0.6 738,422 - GFF684 0.33 +0.3 738,422 - GFF684 0.33 +0.2 738,422 - GFF684 0.33 +0.7 738,422 - GFF684 0.33 +0.2 738,658 + GFF684 0.57 -0.8 738,658 + GFF684 0.57 -0.1 738,659 - GFF684 0.58 -1.0 738,659 - GFF684 0.58 +1.0 738,659 - GFF684 0.58 -0.0 738,659 - GFF684 0.58 -0.5 738,659 - GFF684 0.58 -0.2 738,676 + GFF684 0.59 +0.1 738,676 + GFF684 0.59 +0.5 738,676 + GFF684 0.59 -1.0 738,676 + GFF684 0.59 -0.5 738,676 + GFF684 0.59 -0.1 738,677 - GFF684 0.59 +0.4 738,691 + GFF684 0.61 -1.2 738,691 + GFF684 0.61 +0.1 738,691 + GFF684 0.61 -1.3 738,748 + GFF684 0.67 -1.3 738,748 + GFF684 0.67 -0.7 738,748 + GFF684 0.67 +1.5 738,748 + GFF684 0.67 +1.0 738,748 + GFF684 0.67 +0.5 738,749 - GFF684 0.67 -0.0 738,749 - GFF684 0.67 -0.6
Or see this region's nucleotide sequence