Strain Fitness in Variovorax sp. SCN45 around GFF678

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF677 and GFF678 are separated by 74 nucleotidesGFF678 and GFF679 overlap by 8 nucleotides GFF677 - FIG00931906: hypothetical protein, at 729,043 to 729,972 GFF677 GFF678 - Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7), at 730,047 to 733,400 GFF678 GFF679 - DNA polymerase-like protein PA0670, at 733,393 to 734,748 GFF679 Position (kb) 730 731 732 733 734Strain fitness (log2 ratio) -2 -1 0 1at 729.112 kb on + strandat 729.113 kb on - strandat 729.260 kb on + strand, within GFF677at 729.260 kb on + strand, within GFF677at 729.260 kb on + strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.261 kb on - strand, within GFF677at 729.287 kb on + strand, within GFF677at 729.287 kb on + strand, within GFF677at 729.340 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.371 kb on + strand, within GFF677at 729.372 kb on - strand, within GFF677at 729.387 kb on + strand, within GFF677at 729.388 kb on - strand, within GFF677at 729.388 kb on - strand, within GFF677at 729.713 kb on + strand, within GFF677at 729.713 kb on + strand, within GFF677at 729.713 kb on + strand, within GFF677at 729.714 kb on - strand, within GFF677at 729.714 kb on - strand, within GFF677at 729.714 kb on - strand, within GFF677at 729.714 kb on - strand, within GFF677at 729.986 kb on + strandat 730.940 kb on - strand, within GFF678at 730.940 kb on - strand, within GFF678at 730.993 kb on + strand, within GFF678at 730.993 kb on + strand, within GFF678at 730.993 kb on + strand, within GFF678at 730.994 kb on - strand, within GFF678at 730.994 kb on - strand, within GFF678at 730.994 kb on - strand, within GFF678at 730.994 kb on - strand, within GFF678at 731.062 kb on + strand, within GFF678at 731.117 kb on - strand, within GFF678at 731.117 kb on - strand, within GFF678at 731.117 kb on - strand, within GFF678at 731.324 kb on - strand, within GFF678at 731.368 kb on + strand, within GFF678at 731.368 kb on + strand, within GFF678at 731.368 kb on + strand, within GFF678at 731.369 kb on - strand, within GFF678at 731.369 kb on - strand, within GFF678at 731.391 kb on + strand, within GFF678at 731.391 kb on + strand, within GFF678at 731.391 kb on + strand, within GFF678at 731.391 kb on + strand, within GFF678at 731.392 kb on - strand, within GFF678at 731.421 kb on + strand, within GFF678at 731.421 kb on + strand, within GFF678at 731.421 kb on + strand, within GFF678at 731.421 kb on + strand, within GFF678at 731.422 kb on - strand, within GFF678at 731.437 kb on + strand, within GFF678at 731.437 kb on + strand, within GFF678at 731.437 kb on + strand, within GFF678at 731.437 kb on + strand, within GFF678at 731.437 kb on + strand, within GFF678at 731.438 kb on - strand, within GFF678at 731.438 kb on - strand, within GFF678at 731.438 kb on - strand, within GFF678at 731.538 kb on - strand, within GFF678at 731.918 kb on - strand, within GFF678at 732.001 kb on + strand, within GFF678at 732.052 kb on + strand, within GFF678at 732.053 kb on - strand, within GFF678at 732.053 kb on - strand, within GFF678at 732.058 kb on + strand, within GFF678at 732.058 kb on + strand, within GFF678at 732.058 kb on + strand, within GFF678at 732.058 kb on + strand, within GFF678at 732.058 kb on + strand, within GFF678at 732.059 kb on - strand, within GFF678at 732.059 kb on - strand, within GFF678at 732.059 kb on - strand, within GFF678at 732.059 kb on - strand, within GFF678at 732.059 kb on - strand, within GFF678at 732.059 kb on - strand, within GFF678at 732.059 kb on - strand, within GFF678at 732.059 kb on - strand, within GFF678at 732.295 kb on + strand, within GFF678at 732.296 kb on - strand, within GFF678at 732.454 kb on + strand, within GFF678at 732.454 kb on + strand, within GFF678at 732.454 kb on + strand, within GFF678at 732.454 kb on + strand, within GFF678at 732.454 kb on + strand, within GFF678at 732.454 kb on + strand, within GFF678at 732.454 kb on + strand, within GFF678at 732.455 kb on - strand, within GFF678at 732.455 kb on - strand, within GFF678at 732.455 kb on - strand, within GFF678at 732.455 kb on - strand, within GFF678at 732.455 kb on - strand, within GFF678at 732.455 kb on - strand, within GFF678at 732.455 kb on - strand, within GFF678at 732.455 kb on - strand, within GFF678at 732.455 kb on - strand, within GFF678at 732.455 kb on - strand, within GFF678at 732.671 kb on + strand, within GFF678at 732.671 kb on + strand, within GFF678at 732.671 kb on + strand, within GFF678at 732.671 kb on + strand, within GFF678at 732.671 kb on + strand, within GFF678at 732.671 kb on + strand, within GFF678at 732.671 kb on + strand, within GFF678at 732.671 kb on + strand, within GFF678at 732.671 kb on + strand, within GFF678at 732.671 kb on + strand, within GFF678at 732.671 kb on + strand, within GFF678at 732.671 kb on + strand, within GFF678at 732.672 kb on - strand, within GFF678at 732.672 kb on - strand, within GFF678at 732.672 kb on - strand, within GFF678at 732.672 kb on - strand, within GFF678at 732.672 kb on - strand, within GFF678at 732.672 kb on - strand, within GFF678at 732.672 kb on - strand, within GFF678at 732.672 kb on - strand, within GFF678at 732.672 kb on - strand, within GFF678at 732.672 kb on - strand, within GFF678at 732.672 kb on - strand, within GFF678at 732.672 kb on - strand, within GFF678at 732.796 kb on + strand, within GFF678at 732.932 kb on - strand, within GFF678at 733.207 kb on + strandat 733.208 kb on - strandat 733.208 kb on - strandat 733.219 kb on + strandat 733.219 kb on + strandat 733.219 kb on + strandat 733.219 kb on + strandat 733.297 kb on + strandat 733.298 kb on - strandat 733.298 kb on - strandat 733.400 kb on + strandat 733.400 kb on + strandat 733.400 kb on + strandat 733.400 kb on + strandat 733.400 kb on + strandat 733.400 kb on + strandat 733.400 kb on + strandat 733.400 kb on + strandat 733.400 kb on + strandat 733.401 kb on - strandat 733.401 kb on - strandat 733.401 kb on - strandat 733.415 kb on + strandat 733.415 kb on + strandat 733.415 kb on + strandat 733.416 kb on - strandat 733.416 kb on - strandat 733.465 kb on + strandat 733.465 kb on + strandat 733.466 kb on - strandat 733.502 kb on + strandat 733.502 kb on + strandat 733.502 kb on + strandat 733.503 kb on - strandat 733.503 kb on - strandat 733.503 kb on - strandat 733.503 kb on - strandat 733.503 kb on - strandat 733.503 kb on - strandat 733.503 kb on - strandat 733.505 kb on + strandat 733.505 kb on + strandat 733.506 kb on - strandat 733.506 kb on - strandat 733.506 kb on - strandat 733.601 kb on + strand, within GFF679at 733.601 kb on + strand, within GFF679at 733.662 kb on - strand, within GFF679at 733.662 kb on - strand, within GFF679at 733.662 kb on - strand, within GFF679at 733.665 kb on + strand, within GFF679

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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729,112 + -0.3
729,113 - +0.5
729,260 + GFF677 0.23 -1.0
729,260 + GFF677 0.23 +0.4
729,260 + GFF677 0.23 -0.2
729,261 - GFF677 0.23 -0.7
729,261 - GFF677 0.23 -0.5
729,261 - GFF677 0.23 -0.4
729,261 - GFF677 0.23 -0.1
729,261 - GFF677 0.23 -1.1
729,287 + GFF677 0.26 -1.0
729,287 + GFF677 0.26 -0.5
729,340 + GFF677 0.32 -1.3
729,371 + GFF677 0.35 -0.0
729,371 + GFF677 0.35 -0.5
729,371 + GFF677 0.35 -0.2
729,371 + GFF677 0.35 -0.9
729,371 + GFF677 0.35 +0.3
729,371 + GFF677 0.35 -0.1
729,372 - GFF677 0.35 +1.1
729,387 + GFF677 0.37 -0.7
729,388 - GFF677 0.37 -0.5
729,388 - GFF677 0.37 -0.7
729,713 + GFF677 0.72 -0.8
729,713 + GFF677 0.72 +0.2
729,713 + GFF677 0.72 +0.2
729,714 - GFF677 0.72 -0.1
729,714 - GFF677 0.72 +0.1
729,714 - GFF677 0.72 -1.1
729,714 - GFF677 0.72 -1.6
729,986 + -0.9
730,940 - GFF678 0.27 -0.8
730,940 - GFF678 0.27 +0.1
730,993 + GFF678 0.28 +0.4
730,993 + GFF678 0.28 -0.1
730,993 + GFF678 0.28 -0.1
730,994 - GFF678 0.28 -0.4
730,994 - GFF678 0.28 +1.0
730,994 - GFF678 0.28 -0.3
730,994 - GFF678 0.28 -0.8
731,062 + GFF678 0.30 +0.8
731,117 - GFF678 0.32 -0.2
731,117 - GFF678 0.32 -0.2
731,117 - GFF678 0.32 -1.2
731,324 - GFF678 0.38 -0.5
731,368 + GFF678 0.39 -0.3
731,368 + GFF678 0.39 +1.0
731,368 + GFF678 0.39 -0.5
731,369 - GFF678 0.39 +0.1
731,369 - GFF678 0.39 +0.3
731,391 + GFF678 0.40 -0.8
731,391 + GFF678 0.40 -2.0
731,391 + GFF678 0.40 -1.2
731,391 + GFF678 0.40 -0.3
731,392 - GFF678 0.40 +0.9
731,421 + GFF678 0.41 +1.4
731,421 + GFF678 0.41 +1.5
731,421 + GFF678 0.41 +0.1
731,421 + GFF678 0.41 -0.5
731,422 - GFF678 0.41 +0.4
731,437 + GFF678 0.41 -0.3
731,437 + GFF678 0.41 -2.3
731,437 + GFF678 0.41 +0.5
731,437 + GFF678 0.41 -0.5
731,437 + GFF678 0.41 -0.1
731,438 - GFF678 0.41 +0.1
731,438 - GFF678 0.41 -1.5
731,438 - GFF678 0.41 -0.7
731,538 - GFF678 0.44 -2.4
731,918 - GFF678 0.56 -0.9
732,001 + GFF678 0.58 +0.2
732,052 + GFF678 0.60 +1.0
732,053 - GFF678 0.60 -0.6
732,053 - GFF678 0.60 +1.0
732,058 + GFF678 0.60 -0.5
732,058 + GFF678 0.60 +1.0
732,058 + GFF678 0.60 -0.5
732,058 + GFF678 0.60 +0.4
732,058 + GFF678 0.60 -0.5
732,059 - GFF678 0.60 +0.5
732,059 - GFF678 0.60 -0.5
732,059 - GFF678 0.60 +0.4
732,059 - GFF678 0.60 -0.0
732,059 - GFF678 0.60 +0.4
732,059 - GFF678 0.60 +0.2
732,059 - GFF678 0.60 -0.5
732,059 - GFF678 0.60 -1.3
732,295 + GFF678 0.67 -0.5
732,296 - GFF678 0.67 -0.2
732,454 + GFF678 0.72 -0.2
732,454 + GFF678 0.72 -0.1
732,454 + GFF678 0.72 +0.9
732,454 + GFF678 0.72 -0.8
732,454 + GFF678 0.72 -0.0
732,454 + GFF678 0.72 -0.0
732,454 + GFF678 0.72 -0.3
732,455 - GFF678 0.72 -1.4
732,455 - GFF678 0.72 +0.1
732,455 - GFF678 0.72 -1.3
732,455 - GFF678 0.72 -1.0
732,455 - GFF678 0.72 -0.3
732,455 - GFF678 0.72 +1.5
732,455 - GFF678 0.72 -0.4
732,455 - GFF678 0.72 +0.1
732,455 - GFF678 0.72 -1.3
732,455 - GFF678 0.72 +0.4
732,671 + GFF678 0.78 -0.5
732,671 + GFF678 0.78 -1.3
732,671 + GFF678 0.78 +0.9
732,671 + GFF678 0.78 -0.3
732,671 + GFF678 0.78 -0.6
732,671 + GFF678 0.78 -0.8
732,671 + GFF678 0.78 -1.8
732,671 + GFF678 0.78 -0.6
732,671 + GFF678 0.78 -1.9
732,671 + GFF678 0.78 -0.2
732,671 + GFF678 0.78 +0.1
732,671 + GFF678 0.78 +0.5
732,672 - GFF678 0.78 -0.7
732,672 - GFF678 0.78 -0.7
732,672 - GFF678 0.78 -0.2
732,672 - GFF678 0.78 -0.8
732,672 - GFF678 0.78 +1.2
732,672 - GFF678 0.78 +0.2
732,672 - GFF678 0.78 +0.5
732,672 - GFF678 0.78 -0.4
732,672 - GFF678 0.78 +0.5
732,672 - GFF678 0.78 +0.0
732,672 - GFF678 0.78 +0.4
732,672 - GFF678 0.78 +0.1
732,796 + GFF678 0.82 +0.2
732,932 - GFF678 0.86 -0.2
733,207 + -0.8
733,208 - -2.7
733,208 - -0.0
733,219 + -1.0
733,219 + +0.5
733,219 + -0.9
733,219 + +0.8
733,297 + -0.6
733,298 - -1.9
733,298 - +0.5
733,400 + +0.4
733,400 + -0.2
733,400 + -0.0
733,400 + +0.5
733,400 + +0.7
733,400 + -0.9
733,400 + +0.7
733,400 + -0.9
733,400 + -0.0
733,401 - +0.2
733,401 - -1.0
733,401 - -0.4
733,415 + -0.6
733,415 + -0.2
733,415 + -0.1
733,416 - +1.5
733,416 - -0.5
733,465 + -0.5
733,465 + +1.1
733,466 - -0.4
733,502 + -0.2
733,502 + -0.0
733,502 + +0.3
733,503 - -0.3
733,503 - -1.1
733,503 - -0.2
733,503 - -2.5
733,503 - -0.3
733,503 - +0.1
733,503 - -0.6
733,505 + -1.2
733,505 + +0.4
733,506 - +0.5
733,506 - -0.0
733,506 - -0.0
733,601 + GFF679 0.15 -1.6
733,601 + GFF679 0.15 +0.2
733,662 - GFF679 0.20 +0.5
733,662 - GFF679 0.20 -0.9
733,662 - GFF679 0.20 -0.7
733,665 + GFF679 0.20 -0.5

Or see this region's nucleotide sequence