Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6730 and GFF6731 overlap by 8 nucleotides GFF6731 and GFF6732 overlap by 4 nucleotides GFF6732 and GFF6733 are separated by 4 nucleotides
GFF6730 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 40,752 to 41,504
GFF6730
GFF6731 - Nucleoside ABC transporter, permease protein 1, at 41,497 to 42,435
GFF6731
GFF6732 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 42,432 to 43,310
GFF6732
GFF6733 - hypothetical protein, at 43,315 to 44,517
GFF6733
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1 at 41.567 kb on + strand at 41.610 kb on - strand, within GFF6731 at 41.610 kb on - strand, within GFF6731 at 41.765 kb on + strand, within GFF6731 at 41.766 kb on - strand, within GFF6731 at 41.766 kb on - strand, within GFF6731 at 41.978 kb on + strand, within GFF6731 at 41.978 kb on + strand, within GFF6731 at 41.979 kb on - strand, within GFF6731 at 42.175 kb on + strand, within GFF6731 at 42.175 kb on + strand, within GFF6731 at 42.176 kb on - strand, within GFF6731 at 42.221 kb on + strand, within GFF6731 at 42.221 kb on + strand, within GFF6731 at 42.222 kb on - strand, within GFF6731 at 42.222 kb on - strand, within GFF6731 at 42.311 kb on + strand, within GFF6731 at 42.312 kb on - strand, within GFF6731 at 42.490 kb on + strand at 42.490 kb on + strand at 42.491 kb on - strand at 42.523 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.526 kb on + strand, within GFF6732 at 42.527 kb on - strand, within GFF6732 at 42.527 kb on - strand, within GFF6732 at 42.527 kb on - strand, within GFF6732 at 42.527 kb on - strand, within GFF6732 at 42.632 kb on - strand, within GFF6732 at 42.632 kb on - strand, within GFF6732 at 42.662 kb on - strand, within GFF6732 at 43.219 kb on + strand, within GFF6732 at 43.253 kb on - strand at 43.253 kb on - strand at 43.453 kb on + strand, within GFF6733 at 43.453 kb on + strand, within GFF6733 at 43.453 kb on + strand, within GFF6733 at 43.454 kb on - strand, within GFF6733 at 43.616 kb on + strand, within GFF6733 at 43.700 kb on + strand, within GFF6733 at 43.701 kb on - strand, within GFF6733 at 43.701 kb on - strand, within GFF6733 at 43.736 kb on + strand, within GFF6733 at 43.737 kb on - strand, within GFF6733
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 41,567 + +0.2 41,610 - GFF6731 0.12 +0.4 41,610 - GFF6731 0.12 +0.8 41,765 + GFF6731 0.29 -0.7 41,766 - GFF6731 0.29 +1.4 41,766 - GFF6731 0.29 -0.3 41,978 + GFF6731 0.51 -1.1 41,978 + GFF6731 0.51 -0.5 41,979 - GFF6731 0.51 +0.5 42,175 + GFF6731 0.72 -0.4 42,175 + GFF6731 0.72 -0.0 42,176 - GFF6731 0.72 +0.2 42,221 + GFF6731 0.77 -0.4 42,221 + GFF6731 0.77 +0.2 42,222 - GFF6731 0.77 -0.4 42,222 - GFF6731 0.77 +1.7 42,311 + GFF6731 0.87 -1.4 42,312 - GFF6731 0.87 +0.3 42,490 + +0.5 42,490 + +0.5 42,491 - +0.5 42,523 + GFF6732 0.10 -0.1 42,526 + GFF6732 0.11 -0.9 42,526 + GFF6732 0.11 -0.2 42,526 + GFF6732 0.11 +0.1 42,526 + GFF6732 0.11 -0.1 42,526 + GFF6732 0.11 -0.6 42,527 - GFF6732 0.11 -0.3 42,527 - GFF6732 0.11 +0.3 42,527 - GFF6732 0.11 -0.2 42,527 - GFF6732 0.11 +0.1 42,632 - GFF6732 0.23 +0.8 42,632 - GFF6732 0.23 +1.7 42,662 - GFF6732 0.26 +0.9 43,219 + GFF6732 0.90 +0.7 43,253 - -0.6 43,253 - +0.5 43,453 + GFF6733 0.11 +0.0 43,453 + GFF6733 0.11 -0.2 43,453 + GFF6733 0.11 -0.5 43,454 - GFF6733 0.12 -0.7 43,616 + GFF6733 0.25 +1.0 43,700 + GFF6733 0.32 +1.7 43,701 - GFF6733 0.32 +0.6 43,701 - GFF6733 0.32 -0.6 43,736 + GFF6733 0.35 -0.3 43,737 - GFF6733 0.35 -2.0
Or see this region's nucleotide sequence