Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6709 and GFF6710 overlap by 1 nucleotides GFF6710 and GFF6711 are separated by 23 nucleotides GFF6711 and GFF6712 overlap by 1 nucleotides
GFF6709 - Putative hemagglutinin-related protein, at 17,162 to 18,418
GFF6709
GFF6710 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 18,418 to 19,371
GFF6710
GFF6711 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 19,395 to 20,219
GFF6711
GFF6712 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 20,219 to 21,259
GFF6712
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1 at 18.439 kb on + strand at 18.884 kb on + strand, within GFF6710 at 18.884 kb on + strand, within GFF6710 at 18.884 kb on + strand, within GFF6710 at 19.063 kb on + strand, within GFF6710 at 19.063 kb on + strand, within GFF6710 at 19.063 kb on + strand, within GFF6710 at 19.064 kb on - strand, within GFF6710 at 19.307 kb on - strand at 19.307 kb on - strand at 19.339 kb on + strand at 19.339 kb on + strand at 19.339 kb on + strand at 19.340 kb on - strand at 19.584 kb on + strand, within GFF6711 at 19.584 kb on + strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.585 kb on - strand, within GFF6711 at 19.824 kb on + strand, within GFF6711 at 19.825 kb on - strand, within GFF6711 at 19.942 kb on + strand, within GFF6711 at 19.943 kb on - strand, within GFF6711 at 20.092 kb on - strand, within GFF6711 at 20.092 kb on - strand, within GFF6711 at 20.939 kb on + strand, within GFF6712 at 21.002 kb on + strand, within GFF6712 at 21.003 kb on - strand, within GFF6712
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 18,439 + +0.4 18,884 + GFF6710 0.49 -0.6 18,884 + GFF6710 0.49 -0.2 18,884 + GFF6710 0.49 -0.1 19,063 + GFF6710 0.68 -0.6 19,063 + GFF6710 0.68 -0.8 19,063 + GFF6710 0.68 +0.7 19,064 - GFF6710 0.68 +0.8 19,307 - -0.7 19,307 - -0.6 19,339 + -0.8 19,339 + -0.8 19,339 + -0.3 19,340 - +1.1 19,584 + GFF6711 0.23 -0.0 19,584 + GFF6711 0.23 +1.7 19,585 - GFF6711 0.23 -0.5 19,585 - GFF6711 0.23 -0.8 19,585 - GFF6711 0.23 -0.4 19,585 - GFF6711 0.23 -0.5 19,585 - GFF6711 0.23 -0.8 19,824 + GFF6711 0.52 -0.1 19,825 - GFF6711 0.52 -0.2 19,942 + GFF6711 0.66 -2.1 19,943 - GFF6711 0.66 -0.6 20,092 - GFF6711 0.84 -0.1 20,092 - GFF6711 0.84 +0.1 20,939 + GFF6712 0.69 -0.4 21,002 + GFF6712 0.75 +1.2 21,003 - GFF6712 0.75 -0.5
Or see this region's nucleotide sequence