Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF666 and GFF667 are separated by 114 nucleotides GFF667 and GFF668 are separated by 482 nucleotides GFF668 and GFF669 are separated by 123 nucleotides
GFF666 - no description, at 718,626 to 719,972
GFF666
GFF667 - no description, at 720,087 to 720,215
GFF667
GFF668 - Transcriptional regulator, LysR family, at 720,698 to 721,609
GFF668
GFF669 - BUG/TctC family periplasmic protein, at 721,733 to 722,728
GFF669
Position (kb) 720
721
722 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 719.726 kb on + strand, within GFF666 at 719.726 kb on + strand, within GFF666 at 719.726 kb on + strand, within GFF666 at 719.726 kb on + strand, within GFF666 at 719.726 kb on + strand, within GFF666 at 719.726 kb on + strand, within GFF666 at 719.726 kb on + strand, within GFF666 at 719.726 kb on + strand, within GFF666 at 719.726 kb on + strand, within GFF666 at 719.726 kb on + strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.727 kb on - strand, within GFF666 at 719.847 kb on + strand at 719.847 kb on + strand at 719.847 kb on + strand at 719.847 kb on + strand at 719.848 kb on - strand at 719.848 kb on - strand at 719.848 kb on - strand at 719.848 kb on - strand at 719.997 kb on + strand at 719.997 kb on + strand at 719.997 kb on + strand at 719.997 kb on + strand at 719.997 kb on + strand at 719.997 kb on + strand at 719.998 kb on - strand at 719.998 kb on - strand at 719.998 kb on - strand at 719.998 kb on - strand at 720.073 kb on + strand at 720.073 kb on + strand at 720.074 kb on - strand at 720.088 kb on + strand at 720.273 kb on + strand at 720.273 kb on + strand at 720.273 kb on + strand at 720.273 kb on + strand at 720.273 kb on + strand at 720.274 kb on - strand at 720.274 kb on - strand at 720.274 kb on - strand at 720.274 kb on - strand at 720.280 kb on + strand at 720.280 kb on + strand at 720.280 kb on + strand at 720.281 kb on - strand at 720.281 kb on - strand at 720.281 kb on - strand at 720.281 kb on - strand at 720.299 kb on + strand at 720.299 kb on + strand at 720.299 kb on + strand at 720.299 kb on + strand at 720.299 kb on + strand at 720.299 kb on + strand at 720.299 kb on + strand at 720.299 kb on + strand at 720.299 kb on + strand at 720.299 kb on + strand at 720.299 kb on + strand at 720.300 kb on - strand at 720.300 kb on - strand at 720.300 kb on - strand at 720.300 kb on - strand at 720.300 kb on - strand at 720.300 kb on - strand at 720.300 kb on - strand at 720.305 kb on + strand at 720.305 kb on + strand at 720.305 kb on + strand at 720.305 kb on + strand at 720.305 kb on + strand at 720.306 kb on - strand at 720.306 kb on - strand at 720.306 kb on - strand at 720.306 kb on - strand at 720.306 kb on - strand at 720.306 kb on - strand at 720.306 kb on - strand at 720.306 kb on - strand at 720.306 kb on - strand at 720.306 kb on - strand at 720.339 kb on - strand at 720.385 kb on - strand at 720.394 kb on + strand at 720.394 kb on + strand at 720.394 kb on + strand at 720.394 kb on + strand at 720.394 kb on + strand at 720.394 kb on + strand at 720.395 kb on - strand at 720.396 kb on + strand at 720.396 kb on + strand at 720.396 kb on + strand at 720.397 kb on - strand at 720.397 kb on - strand at 720.449 kb on + strand at 720.449 kb on + strand at 720.449 kb on + strand at 720.450 kb on - strand at 720.450 kb on - strand at 720.450 kb on - strand at 720.450 kb on - strand at 720.450 kb on - strand at 720.450 kb on - strand at 720.450 kb on - strand at 720.450 kb on - strand at 720.467 kb on + strand at 720.467 kb on + strand at 720.467 kb on + strand at 720.467 kb on + strand at 720.468 kb on - strand at 720.468 kb on - strand at 720.480 kb on + strand at 720.480 kb on + strand at 720.480 kb on + strand at 720.480 kb on + strand at 720.480 kb on + strand at 720.480 kb on + strand at 720.481 kb on - strand at 720.481 kb on - strand at 720.481 kb on - strand at 720.481 kb on - strand at 720.486 kb on + strand at 720.486 kb on + strand at 720.486 kb on + strand at 720.486 kb on + strand at 720.487 kb on - strand at 720.487 kb on - strand at 720.487 kb on - strand at 720.487 kb on - strand at 720.549 kb on + strand at 720.549 kb on + strand at 720.550 kb on - strand at 720.550 kb on - strand at 720.551 kb on + strand at 720.551 kb on + strand at 720.551 kb on + strand at 720.551 kb on + strand at 720.551 kb on + strand at 720.551 kb on + strand at 720.551 kb on + strand at 720.551 kb on + strand at 720.551 kb on + strand at 720.551 kb on + strand at 720.551 kb on + strand at 720.551 kb on + strand at 720.552 kb on - strand at 720.552 kb on - strand at 720.552 kb on - strand at 720.552 kb on - strand at 720.552 kb on - strand at 720.552 kb on - strand at 720.552 kb on - strand at 720.552 kb on - strand at 720.564 kb on + strand at 720.565 kb on - strand at 720.610 kb on + strand at 720.611 kb on - strand at 720.611 kb on - strand at 720.611 kb on - strand at 720.621 kb on + strand at 720.622 kb on - strand at 720.646 kb on + strand at 720.646 kb on + strand at 720.646 kb on + strand at 720.646 kb on + strand at 720.646 kb on + strand at 720.647 kb on - strand at 720.647 kb on - strand at 720.647 kb on - strand at 720.647 kb on - strand at 720.647 kb on - strand at 720.647 kb on - strand at 720.647 kb on - strand at 720.703 kb on + strand at 720.703 kb on + strand at 720.703 kb on + strand at 720.703 kb on + strand at 720.703 kb on + strand at 720.704 kb on - strand at 720.704 kb on - strand at 720.704 kb on - strand at 720.704 kb on - strand at 720.704 kb on - strand at 720.704 kb on - strand at 720.704 kb on - strand at 720.779 kb on + strand at 720.779 kb on + strand at 720.779 kb on + strand at 720.780 kb on - strand at 720.822 kb on - strand, within GFF668 at 720.873 kb on + strand, within GFF668 at 720.873 kb on + strand, within GFF668 at 720.873 kb on + strand, within GFF668 at 720.873 kb on + strand, within GFF668 at 720.873 kb on + strand, within GFF668 at 720.873 kb on + strand, within GFF668 at 720.873 kb on + strand, within GFF668 at 720.874 kb on - strand, within GFF668 at 720.874 kb on - strand, within GFF668 at 720.874 kb on - strand, within GFF668 at 720.874 kb on - strand, within GFF668 at 720.874 kb on - strand, within GFF668 at 720.874 kb on - strand, within GFF668 at 720.874 kb on - strand, within GFF668 at 720.951 kb on + strand, within GFF668 at 720.951 kb on + strand, within GFF668 at 720.951 kb on + strand, within GFF668 at 720.952 kb on - strand, within GFF668 at 720.952 kb on - strand, within GFF668 at 721.166 kb on + strand, within GFF668 at 721.166 kb on + strand, within GFF668 at 721.166 kb on + strand, within GFF668 at 721.166 kb on + strand, within GFF668 at 721.166 kb on + strand, within GFF668 at 721.166 kb on + strand, within GFF668 at 721.166 kb on + strand, within GFF668 at 721.166 kb on + strand, within GFF668 at 721.166 kb on + strand, within GFF668 at 721.167 kb on - strand, within GFF668 at 721.167 kb on - strand, within GFF668 at 721.167 kb on - strand, within GFF668 at 721.167 kb on - strand, within GFF668 at 721.167 kb on - strand, within GFF668 at 721.167 kb on - strand, within GFF668 at 721.167 kb on - strand, within GFF668 at 721.167 kb on - strand, within GFF668 at 721.655 kb on - strand at 721.689 kb on + strand at 721.689 kb on + strand at 721.689 kb on + strand at 721.689 kb on + strand at 721.689 kb on + strand at 721.689 kb on + strand at 721.689 kb on + strand at 721.689 kb on + strand at 721.689 kb on + strand at 721.689 kb on + strand at 721.690 kb on - strand at 721.690 kb on - strand at 721.690 kb on - strand at 721.690 kb on - strand at 721.690 kb on - strand at 721.690 kb on - strand at 721.778 kb on + strand at 721.778 kb on + strand at 721.778 kb on + strand at 721.778 kb on + strand at 721.778 kb on + strand at 721.778 kb on + strand at 721.779 kb on - strand at 721.779 kb on - strand at 721.779 kb on - strand at 721.779 kb on - strand at 721.779 kb on - strand at 721.779 kb on - strand at 721.988 kb on + strand, within GFF669 at 721.988 kb on + strand, within GFF669 at 721.988 kb on + strand, within GFF669 at 721.988 kb on + strand, within GFF669 at 721.988 kb on + strand, within GFF669 at 721.989 kb on - strand, within GFF669 at 721.989 kb on - strand, within GFF669 at 722.081 kb on + strand, within GFF669 at 722.082 kb on - strand, within GFF669 at 722.189 kb on + strand, within GFF669 at 722.189 kb on + strand, within GFF669 at 722.190 kb on - strand, within GFF669 at 722.213 kb on + strand, within GFF669 at 722.213 kb on + strand, within GFF669 at 722.213 kb on + strand, within GFF669 at 722.213 kb on + strand, within GFF669 at 722.214 kb on - strand, within GFF669 at 722.214 kb on - strand, within GFF669 at 722.214 kb on - strand, within GFF669 at 722.214 kb on - strand, within GFF669 at 722.214 kb on - strand, within GFF669 at 722.219 kb on + strand, within GFF669 at 722.219 kb on + strand, within GFF669 at 722.220 kb on - strand, within GFF669 at 722.220 kb on - strand, within GFF669 at 722.220 kb on - strand, within GFF669 at 722.220 kb on - strand, within GFF669 at 722.220 kb on - strand, within GFF669 at 722.306 kb on + strand, within GFF669 at 722.306 kb on + strand, within GFF669 at 722.306 kb on + strand, within GFF669 at 722.307 kb on - strand, within GFF669 at 722.483 kb on + strand, within GFF669 at 722.484 kb on - strand, within GFF669
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 719,726 + GFF666 0.82 +0.3 719,726 + GFF666 0.82 -0.0 719,726 + GFF666 0.82 -1.6 719,726 + GFF666 0.82 -0.3 719,726 + GFF666 0.82 +0.5 719,726 + GFF666 0.82 +2.8 719,726 + GFF666 0.82 -0.7 719,726 + GFF666 0.82 -1.0 719,726 + GFF666 0.82 -0.8 719,726 + GFF666 0.82 -0.8 719,727 - GFF666 0.82 -1.0 719,727 - GFF666 0.82 -0.8 719,727 - GFF666 0.82 +0.5 719,727 - GFF666 0.82 -1.2 719,727 - GFF666 0.82 -0.5 719,727 - GFF666 0.82 -0.5 719,727 - GFF666 0.82 -0.5 719,727 - GFF666 0.82 -0.1 719,727 - GFF666 0.82 -0.4 719,727 - GFF666 0.82 -0.3 719,727 - GFF666 0.82 -0.4 719,727 - GFF666 0.82 +0.7 719,727 - GFF666 0.82 -0.9 719,727 - GFF666 0.82 -0.2 719,847 + -2.8 719,847 + -0.1 719,847 + -1.2 719,847 + +0.4 719,848 - -0.3 719,848 - +1.5 719,848 - +1.4 719,848 - -0.0 719,997 + +0.7 719,997 + -0.8 719,997 + -1.8 719,997 + -0.7 719,997 + -0.4 719,997 + -0.0 719,998 - -0.6 719,998 - -0.5 719,998 - +0.5 719,998 - +2.1 720,073 + -0.0 720,073 + +2.1 720,074 - -0.0 720,088 + -0.0 720,273 + -0.0 720,273 + +0.2 720,273 + -0.4 720,273 + -0.5 720,273 + -0.3 720,274 - +0.5 720,274 - +0.3 720,274 - +1.5 720,274 - -1.0 720,280 + +0.3 720,280 + -0.4 720,280 + -0.5 720,281 - +0.5 720,281 - -0.9 720,281 - -0.2 720,281 - -1.2 720,299 + -0.4 720,299 + -0.1 720,299 + +0.1 720,299 + -1.6 720,299 + +0.5 720,299 + -1.3 720,299 + -0.6 720,299 + -0.6 720,299 + -1.7 720,299 + -0.8 720,299 + -0.5 720,300 - -0.2 720,300 - -1.3 720,300 - +0.6 720,300 - -1.0 720,300 - -0.0 720,300 - +0.0 720,300 - -1.1 720,305 + -0.3 720,305 + -0.3 720,305 + -0.0 720,305 + +1.0 720,305 + +0.4 720,306 - -0.3 720,306 - +0.1 720,306 - +0.0 720,306 - +0.8 720,306 - +0.2 720,306 - -0.5 720,306 - +0.5 720,306 - -0.9 720,306 - -0.4 720,306 - -1.9 720,339 - +1.1 720,385 - +0.3 720,394 + +0.6 720,394 + -1.4 720,394 + -0.8 720,394 + +0.7 720,394 + -0.5 720,394 + -0.6 720,395 - -0.7 720,396 + +0.5 720,396 + -0.9 720,396 + +1.3 720,397 - -1.5 720,397 - -0.8 720,449 + -0.2 720,449 + -1.0 720,449 + -0.2 720,450 - +0.6 720,450 - -0.3 720,450 - -0.7 720,450 - +0.3 720,450 - -1.1 720,450 - -0.5 720,450 - -0.8 720,450 - -1.3 720,467 + -1.0 720,467 + +0.2 720,467 + +0.6 720,467 + -0.6 720,468 - -1.0 720,468 - -0.6 720,480 + +0.5 720,480 + -1.0 720,480 + +0.0 720,480 + -1.2 720,480 + -0.3 720,480 + -0.2 720,481 - -0.1 720,481 - -0.1 720,481 - +1.1 720,481 - +0.6 720,486 + -1.0 720,486 + -0.5 720,486 + +0.3 720,486 + -0.5 720,487 - +1.4 720,487 - +0.3 720,487 - +0.5 720,487 - -1.0 720,549 + +0.1 720,549 + -0.8 720,550 - -0.7 720,550 - -0.8 720,551 + -0.5 720,551 + +1.5 720,551 + -1.2 720,551 + -1.6 720,551 + -0.2 720,551 + -1.4 720,551 + +1.2 720,551 + -1.2 720,551 + -1.7 720,551 + +0.4 720,551 + -0.1 720,551 + -0.1 720,552 - +0.8 720,552 - -0.5 720,552 - -0.3 720,552 - -0.5 720,552 - +0.1 720,552 - -0.6 720,552 - -1.5 720,552 - -0.5 720,564 + -1.3 720,565 - -1.5 720,610 + -0.3 720,611 - -0.3 720,611 - -0.6 720,611 - -0.6 720,621 + +0.3 720,622 - -0.9 720,646 + +2.0 720,646 + +1.5 720,646 + +0.9 720,646 + -0.2 720,646 + +0.4 720,647 - +0.5 720,647 - +0.4 720,647 - -0.2 720,647 - +0.2 720,647 - -0.6 720,647 - -1.0 720,647 - +1.8 720,703 + +0.0 720,703 + +0.2 720,703 + -0.2 720,703 + -0.0 720,703 + -0.4 720,704 - -1.0 720,704 - -0.0 720,704 - +0.4 720,704 - -1.3 720,704 - -0.3 720,704 - +1.1 720,704 - +0.1 720,779 + -2.5 720,779 + +0.5 720,779 + -0.2 720,780 - +0.6 720,822 - GFF668 0.14 -0.1 720,873 + GFF668 0.19 -0.3 720,873 + GFF668 0.19 +0.2 720,873 + GFF668 0.19 -1.3 720,873 + GFF668 0.19 +1.1 720,873 + GFF668 0.19 -0.6 720,873 + GFF668 0.19 +0.0 720,873 + GFF668 0.19 -1.8 720,874 - GFF668 0.19 -0.6 720,874 - GFF668 0.19 -1.1 720,874 - GFF668 0.19 -1.6 720,874 - GFF668 0.19 -1.1 720,874 - GFF668 0.19 -0.0 720,874 - GFF668 0.19 -0.2 720,874 - GFF668 0.19 +0.5 720,951 + GFF668 0.28 -1.5 720,951 + GFF668 0.28 -2.0 720,951 + GFF668 0.28 -0.4 720,952 - GFF668 0.28 -0.2 720,952 - GFF668 0.28 -1.3 721,166 + GFF668 0.51 -0.8 721,166 + GFF668 0.51 +0.4 721,166 + GFF668 0.51 +0.0 721,166 + GFF668 0.51 -1.8 721,166 + GFF668 0.51 +0.7 721,166 + GFF668 0.51 +0.3 721,166 + GFF668 0.51 +1.0 721,166 + GFF668 0.51 +0.2 721,166 + GFF668 0.51 -0.3 721,167 - GFF668 0.51 -1.5 721,167 - GFF668 0.51 -1.6 721,167 - GFF668 0.51 -0.9 721,167 - GFF668 0.51 -0.2 721,167 - GFF668 0.51 +0.2 721,167 - GFF668 0.51 -0.7 721,167 - GFF668 0.51 -0.6 721,167 - GFF668 0.51 +0.7 721,655 - +0.0 721,689 + -0.0 721,689 + -1.0 721,689 + +0.2 721,689 + -0.9 721,689 + +0.1 721,689 + -0.6 721,689 + -1.0 721,689 + -0.7 721,689 + +0.1 721,689 + -1.8 721,690 - -0.6 721,690 - -0.6 721,690 - -0.0 721,690 - +0.9 721,690 - +0.4 721,690 - -1.5 721,778 + -1.0 721,778 + -0.1 721,778 + +0.5 721,778 + -0.3 721,778 + -0.0 721,778 + +0.3 721,779 - -0.5 721,779 - -0.7 721,779 - -0.5 721,779 - -0.5 721,779 - -0.9 721,779 - +0.4 721,988 + GFF669 0.26 -0.6 721,988 + GFF669 0.26 -0.0 721,988 + GFF669 0.26 -0.0 721,988 + GFF669 0.26 -1.9 721,988 + GFF669 0.26 +0.0 721,989 - GFF669 0.26 -1.9 721,989 - GFF669 0.26 -0.0 722,081 + GFF669 0.35 +0.2 722,082 - GFF669 0.35 -0.4 722,189 + GFF669 0.46 -0.6 722,189 + GFF669 0.46 +0.5 722,190 - GFF669 0.46 +0.5 722,213 + GFF669 0.48 +0.2 722,213 + GFF669 0.48 -0.5 722,213 + GFF669 0.48 -1.4 722,213 + GFF669 0.48 -0.3 722,214 - GFF669 0.48 +0.3 722,214 - GFF669 0.48 +0.7 722,214 - GFF669 0.48 +0.3 722,214 - GFF669 0.48 -0.2 722,214 - GFF669 0.48 +1.2 722,219 + GFF669 0.49 +0.5 722,219 + GFF669 0.49 +0.1 722,220 - GFF669 0.49 +0.5 722,220 - GFF669 0.49 -0.3 722,220 - GFF669 0.49 +0.5 722,220 - GFF669 0.49 +0.4 722,220 - GFF669 0.49 -0.0 722,306 + GFF669 0.58 -0.1 722,306 + GFF669 0.58 -0.7 722,306 + GFF669 0.58 -1.6 722,307 - GFF669 0.58 -0.0 722,483 + GFF669 0.75 -0.5 722,484 - GFF669 0.75 +0.0
Or see this region's nucleotide sequence