Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6591 and GFF6592 are separated by 58 nucleotides GFF6592 and GFF6593 overlap by 11 nucleotides GFF6593 and GFF6594 are separated by 83 nucleotides GFF6594 and GFF6595 are separated by 94 nucleotides
GFF6591 - Transcriptional regulator, GntR family, at 34,801 to 35,547
GFF6591
GFF6592 - hypothetical protein, at 35,606 to 36,322
GFF6592
GFF6593 - Alcohol dehydrogenase (EC 1.1.1.1), at 36,312 to 37,580
GFF6593
GFF6594 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 37,664 to 38,485
GFF6594
GFF6595 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 38,580 to 40,082
GFF6595
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 35.382 kb on + strand, within GFF6591 at 35.554 kb on + strand at 35.585 kb on + strand at 35.585 kb on + strand at 35.591 kb on - strand at 35.593 kb on + strand at 35.593 kb on + strand at 35.594 kb on - strand at 35.615 kb on - strand at 35.615 kb on - strand at 35.780 kb on + strand, within GFF6592 at 35.796 kb on - strand, within GFF6592 at 35.796 kb on - strand, within GFF6592 at 35.891 kb on + strand, within GFF6592 at 35.891 kb on + strand, within GFF6592 at 35.891 kb on + strand, within GFF6592 at 36.289 kb on - strand at 36.309 kb on - strand at 36.474 kb on + strand, within GFF6593 at 36.706 kb on + strand, within GFF6593 at 36.706 kb on + strand, within GFF6593 at 36.706 kb on + strand, within GFF6593 at 36.706 kb on + strand, within GFF6593 at 36.706 kb on + strand, within GFF6593 at 36.706 kb on + strand, within GFF6593 at 36.706 kb on + strand, within GFF6593 at 36.706 kb on + strand, within GFF6593 at 36.706 kb on + strand, within GFF6593 at 36.706 kb on + strand, within GFF6593 at 36.706 kb on + strand, within GFF6593 at 36.706 kb on + strand, within GFF6593 at 36.706 kb on + strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.707 kb on - strand, within GFF6593 at 36.873 kb on + strand, within GFF6593 at 36.873 kb on + strand, within GFF6593 at 36.873 kb on + strand, within GFF6593 at 36.873 kb on + strand, within GFF6593 at 36.873 kb on + strand, within GFF6593 at 36.874 kb on - strand, within GFF6593 at 36.874 kb on - strand, within GFF6593 at 36.874 kb on - strand, within GFF6593 at 36.963 kb on + strand, within GFF6593 at 36.964 kb on - strand, within GFF6593 at 36.964 kb on - strand, within GFF6593 at 36.994 kb on - strand, within GFF6593 at 36.994 kb on - strand, within GFF6593 at 36.996 kb on - strand, within GFF6593 at 37.071 kb on + strand, within GFF6593 at 37.071 kb on + strand, within GFF6593 at 37.113 kb on + strand, within GFF6593 at 37.179 kb on + strand, within GFF6593 at 37.180 kb on - strand, within GFF6593 at 37.180 kb on - strand, within GFF6593 at 37.180 kb on - strand, within GFF6593 at 37.239 kb on + strand, within GFF6593 at 37.240 kb on - strand, within GFF6593 at 37.240 kb on - strand, within GFF6593 at 37.650 kb on + strand at 37.650 kb on + strand at 37.700 kb on + strand at 37.700 kb on + strand at 37.701 kb on - strand at 37.701 kb on - strand at 37.725 kb on - strand at 37.754 kb on + strand, within GFF6594 at 37.754 kb on + strand, within GFF6594 at 37.755 kb on - strand, within GFF6594 at 37.761 kb on + strand, within GFF6594 at 37.762 kb on - strand, within GFF6594 at 37.762 kb on - strand, within GFF6594 at 37.762 kb on - strand, within GFF6594 at 37.782 kb on - strand, within GFF6594 at 37.877 kb on + strand, within GFF6594 at 37.878 kb on - strand, within GFF6594 at 37.922 kb on + strand, within GFF6594 at 37.922 kb on + strand, within GFF6594 at 37.923 kb on - strand, within GFF6594 at 37.923 kb on - strand, within GFF6594 at 37.923 kb on - strand, within GFF6594 at 37.953 kb on - strand, within GFF6594 at 37.953 kb on - strand, within GFF6594 at 38.096 kb on + strand, within GFF6594 at 38.096 kb on + strand, within GFF6594 at 38.127 kb on - strand, within GFF6594 at 38.150 kb on + strand, within GFF6594 at 38.151 kb on - strand, within GFF6594 at 38.255 kb on + strand, within GFF6594 at 38.255 kb on + strand, within GFF6594 at 38.256 kb on - strand, within GFF6594 at 38.256 kb on - strand, within GFF6594 at 38.256 kb on - strand, within GFF6594 at 38.299 kb on + strand, within GFF6594 at 38.299 kb on + strand, within GFF6594 at 38.299 kb on + strand, within GFF6594
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 35,382 + GFF6591 0.78 -0.4 35,554 + -0.6 35,585 + -0.1 35,585 + -0.1 35,591 - +0.1 35,593 + +0.1 35,593 + -0.2 35,594 - +0.1 35,615 - +0.3 35,615 - -1.4 35,780 + GFF6592 0.24 -0.0 35,796 - GFF6592 0.26 +0.9 35,796 - GFF6592 0.26 -0.5 35,891 + GFF6592 0.40 +0.7 35,891 + GFF6592 0.40 -0.3 35,891 + GFF6592 0.40 -0.4 36,289 - -0.2 36,309 - -0.3 36,474 + GFF6593 0.13 +0.1 36,706 + GFF6593 0.31 -0.3 36,706 + GFF6593 0.31 +0.4 36,706 + GFF6593 0.31 +0.5 36,706 + GFF6593 0.31 +1.3 36,706 + GFF6593 0.31 +0.1 36,706 + GFF6593 0.31 -0.6 36,706 + GFF6593 0.31 -0.8 36,706 + GFF6593 0.31 +0.2 36,706 + GFF6593 0.31 -1.1 36,706 + GFF6593 0.31 -0.4 36,706 + GFF6593 0.31 +0.4 36,706 + GFF6593 0.31 +0.1 36,706 + GFF6593 0.31 +1.2 36,707 - GFF6593 0.31 -0.9 36,707 - GFF6593 0.31 +0.1 36,707 - GFF6593 0.31 +0.1 36,707 - GFF6593 0.31 -0.2 36,707 - GFF6593 0.31 -0.3 36,707 - GFF6593 0.31 +0.0 36,707 - GFF6593 0.31 +0.8 36,707 - GFF6593 0.31 +0.4 36,707 - GFF6593 0.31 +1.1 36,707 - GFF6593 0.31 -1.3 36,707 - GFF6593 0.31 -0.1 36,707 - GFF6593 0.31 -1.0 36,707 - GFF6593 0.31 +0.1 36,707 - GFF6593 0.31 +0.1 36,707 - GFF6593 0.31 +0.0 36,707 - GFF6593 0.31 +1.2 36,707 - GFF6593 0.31 -1.0 36,707 - GFF6593 0.31 -0.4 36,873 + GFF6593 0.44 -0.5 36,873 + GFF6593 0.44 -0.3 36,873 + GFF6593 0.44 +0.3 36,873 + GFF6593 0.44 -0.4 36,873 + GFF6593 0.44 +0.2 36,874 - GFF6593 0.44 -0.2 36,874 - GFF6593 0.44 +1.3 36,874 - GFF6593 0.44 +0.3 36,963 + GFF6593 0.51 -0.1 36,964 - GFF6593 0.51 -2.8 36,964 - GFF6593 0.51 +0.1 36,994 - GFF6593 0.54 -0.8 36,994 - GFF6593 0.54 -0.0 36,996 - GFF6593 0.54 -0.4 37,071 + GFF6593 0.60 +0.1 37,071 + GFF6593 0.60 -1.3 37,113 + GFF6593 0.63 -0.9 37,179 + GFF6593 0.68 +0.8 37,180 - GFF6593 0.68 +0.5 37,180 - GFF6593 0.68 -0.9 37,180 - GFF6593 0.68 -0.6 37,239 + GFF6593 0.73 -0.9 37,240 - GFF6593 0.73 -0.2 37,240 - GFF6593 0.73 +0.1 37,650 + +1.0 37,650 + +0.7 37,700 + +0.9 37,700 + +0.8 37,701 - -0.5 37,701 - -0.2 37,725 - -0.2 37,754 + GFF6594 0.11 +0.4 37,754 + GFF6594 0.11 -0.3 37,755 - GFF6594 0.11 -1.3 37,761 + GFF6594 0.12 +1.7 37,762 - GFF6594 0.12 +1.3 37,762 - GFF6594 0.12 -0.4 37,762 - GFF6594 0.12 +1.3 37,782 - GFF6594 0.14 +0.7 37,877 + GFF6594 0.26 -0.7 37,878 - GFF6594 0.26 -0.0 37,922 + GFF6594 0.31 -0.5 37,922 + GFF6594 0.31 +1.2 37,923 - GFF6594 0.32 -0.1 37,923 - GFF6594 0.32 -0.4 37,923 - GFF6594 0.32 -0.1 37,953 - GFF6594 0.35 -0.5 37,953 - GFF6594 0.35 +0.8 38,096 + GFF6594 0.53 -0.1 38,096 + GFF6594 0.53 -0.6 38,127 - GFF6594 0.56 -0.3 38,150 + GFF6594 0.59 -1.2 38,151 - GFF6594 0.59 -2.4 38,255 + GFF6594 0.72 -0.1 38,255 + GFF6594 0.72 -1.8 38,256 - GFF6594 0.72 -0.0 38,256 - GFF6594 0.72 +0.3 38,256 - GFF6594 0.72 -0.1 38,299 + GFF6594 0.77 -1.2 38,299 + GFF6594 0.77 -1.3 38,299 + GFF6594 0.77 +1.7
Or see this region's nucleotide sequence