Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6579 and GFF6580 overlap by 4 nucleotides GFF6580 and GFF6581 overlap by 4 nucleotides GFF6581 and GFF6582 are separated by 217 nucleotides GFF6582 and GFF6583 are separated by 24 nucleotides
GFF6579 - Conjugative transfer protein TrbB, at 20,176 to 21,213
GFF6579
GFF6580 - CopG domain-containing protein, at 21,210 to 21,674
GFF6580
GFF6581 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 21,671 to 23,680
GFF6581
GFF6582 - Conjugative transfer protein TrbK, at 23,898 to 24,125
GFF6582
GFF6583 - Transcriptional regulator, LysR family, at 24,150 to 25,064
GFF6583
Position (kb) 21
22
23
24 Strain fitness (log2 ratio) -2
-1
0
1
2 at 20.825 kb on + strand, within GFF6579 at 20.825 kb on + strand, within GFF6579 at 20.825 kb on + strand, within GFF6579 at 20.825 kb on + strand, within GFF6579 at 20.826 kb on - strand, within GFF6579 at 21.213 kb on + strand at 21.214 kb on - strand at 21.214 kb on - strand at 21.214 kb on - strand at 21.214 kb on - strand at 21.258 kb on - strand, within GFF6580 at 21.424 kb on + strand, within GFF6580 at 21.425 kb on - strand, within GFF6580 at 21.674 kb on + strand at 21.675 kb on - strand at 21.675 kb on - strand at 21.675 kb on - strand at 21.820 kb on - strand at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 22.035 kb on + strand, within GFF6581 at 22.198 kb on - strand, within GFF6581 at 22.198 kb on - strand, within GFF6581 at 22.326 kb on + strand, within GFF6581 at 22.326 kb on + strand, within GFF6581 at 22.327 kb on - strand, within GFF6581 at 22.584 kb on + strand, within GFF6581 at 22.584 kb on + strand, within GFF6581 at 22.584 kb on + strand, within GFF6581 at 22.585 kb on - strand, within GFF6581 at 22.585 kb on - strand, within GFF6581 at 22.585 kb on - strand, within GFF6581 at 22.585 kb on - strand, within GFF6581 at 22.897 kb on - strand, within GFF6581 at 23.055 kb on + strand, within GFF6581 at 23.055 kb on + strand, within GFF6581 at 23.056 kb on - strand, within GFF6581 at 23.056 kb on - strand, within GFF6581 at 23.056 kb on - strand, within GFF6581 at 23.056 kb on - strand, within GFF6581 at 23.056 kb on - strand, within GFF6581 at 23.056 kb on - strand, within GFF6581 at 23.192 kb on + strand, within GFF6581 at 23.193 kb on - strand, within GFF6581 at 23.268 kb on + strand, within GFF6581 at 23.269 kb on - strand, within GFF6581 at 23.294 kb on + strand, within GFF6581 at 23.294 kb on + strand, within GFF6581 at 23.294 kb on + strand, within GFF6581 at 23.361 kb on + strand, within GFF6581 at 23.362 kb on - strand, within GFF6581 at 23.527 kb on - strand at 23.527 kb on - strand at 23.527 kb on - strand at 23.527 kb on - strand at 23.527 kb on - strand at 23.570 kb on + strand at 23.899 kb on + strand at 23.899 kb on + strand at 23.900 kb on - strand at 23.900 kb on - strand at 24.256 kb on + strand, within GFF6583 at 24.256 kb on + strand, within GFF6583 at 24.256 kb on + strand, within GFF6583 at 24.306 kb on + strand, within GFF6583 at 24.307 kb on - strand, within GFF6583 at 24.307 kb on - strand, within GFF6583 at 24.336 kb on - strand, within GFF6583 at 24.336 kb on - strand, within GFF6583 at 24.389 kb on - strand, within GFF6583 at 24.389 kb on - strand, within GFF6583 at 24.389 kb on - strand, within GFF6583 at 24.500 kb on - strand, within GFF6583 at 24.530 kb on + strand, within GFF6583 at 24.531 kb on - strand, within GFF6583 at 24.532 kb on + strand, within GFF6583 at 24.533 kb on - strand, within GFF6583 at 24.533 kb on - strand, within GFF6583 at 24.644 kb on - strand, within GFF6583 at 24.644 kb on - strand, within GFF6583
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 20,825 + GFF6579 0.63 +0.3 20,825 + GFF6579 0.63 -0.9 20,825 + GFF6579 0.63 +1.1 20,825 + GFF6579 0.63 -0.1 20,826 - GFF6579 0.63 +0.5 21,213 + -0.6 21,214 - +0.4 21,214 - -0.3 21,214 - -0.6 21,214 - -0.3 21,258 - GFF6580 0.10 -0.2 21,424 + GFF6580 0.46 +0.4 21,425 - GFF6580 0.46 -0.2 21,674 + -0.7 21,675 - +1.1 21,675 - -0.2 21,675 - -0.1 21,820 - -0.5 21,887 + GFF6581 0.11 -0.2 21,887 + GFF6581 0.11 +0.3 21,887 + GFF6581 0.11 +0.7 21,887 + GFF6581 0.11 +1.0 21,887 + GFF6581 0.11 -1.6 21,887 + GFF6581 0.11 -1.3 21,887 + GFF6581 0.11 -1.0 21,888 - GFF6581 0.11 +0.1 21,888 - GFF6581 0.11 -2.0 21,888 - GFF6581 0.11 +0.7 21,888 - GFF6581 0.11 -0.4 21,888 - GFF6581 0.11 +0.5 21,888 - GFF6581 0.11 +0.5 22,035 + GFF6581 0.18 -0.2 22,198 - GFF6581 0.26 -0.2 22,198 - GFF6581 0.26 -0.6 22,326 + GFF6581 0.33 -0.1 22,326 + GFF6581 0.33 -0.0 22,327 - GFF6581 0.33 -0.3 22,584 + GFF6581 0.45 +0.7 22,584 + GFF6581 0.45 -0.7 22,584 + GFF6581 0.45 +1.7 22,585 - GFF6581 0.45 -0.0 22,585 - GFF6581 0.45 -0.7 22,585 - GFF6581 0.45 -0.3 22,585 - GFF6581 0.45 -1.7 22,897 - GFF6581 0.61 +0.1 23,055 + GFF6581 0.69 -0.6 23,055 + GFF6581 0.69 -0.2 23,056 - GFF6581 0.69 +0.0 23,056 - GFF6581 0.69 +0.5 23,056 - GFF6581 0.69 +0.1 23,056 - GFF6581 0.69 +0.2 23,056 - GFF6581 0.69 -0.3 23,056 - GFF6581 0.69 +0.1 23,192 + GFF6581 0.76 +2.0 23,193 - GFF6581 0.76 -0.1 23,268 + GFF6581 0.79 +1.7 23,269 - GFF6581 0.80 +0.1 23,294 + GFF6581 0.81 +2.4 23,294 + GFF6581 0.81 -1.3 23,294 + GFF6581 0.81 -0.2 23,361 + GFF6581 0.84 -0.6 23,362 - GFF6581 0.84 -0.1 23,527 - +0.7 23,527 - -0.6 23,527 - -0.8 23,527 - -0.5 23,527 - -0.3 23,570 + -0.4 23,899 + -1.6 23,899 + -0.1 23,900 - -0.3 23,900 - -0.1 24,256 + GFF6583 0.12 +0.3 24,256 + GFF6583 0.12 -1.2 24,256 + GFF6583 0.12 -0.4 24,306 + GFF6583 0.17 +0.4 24,307 - GFF6583 0.17 +0.4 24,307 - GFF6583 0.17 +0.2 24,336 - GFF6583 0.20 -1.1 24,336 - GFF6583 0.20 +0.1 24,389 - GFF6583 0.26 -0.1 24,389 - GFF6583 0.26 -0.2 24,389 - GFF6583 0.26 -0.6 24,500 - GFF6583 0.38 +0.3 24,530 + GFF6583 0.42 -0.4 24,531 - GFF6583 0.42 -0.3 24,532 + GFF6583 0.42 -1.0 24,533 - GFF6583 0.42 -1.1 24,533 - GFF6583 0.42 -0.3 24,644 - GFF6583 0.54 -0.0 24,644 - GFF6583 0.54 -0.9
Or see this region's nucleotide sequence