Strain Fitness in Variovorax sp. SCN45 around GFF6450

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6448 and GFF6449 are separated by 13 nucleotidesGFF6449 and GFF6450 are separated by 137 nucleotidesGFF6450 and GFF6451 overlap by 4 nucleotidesGFF6451 and GFF6452 are separated by 11 nucleotides GFF6448 - Glucans biosynthesis protein D precursor, at 24,468 to 26,066 GFF6448 GFF6449 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8), at 26,080 to 26,490 GFF6449 GFF6450 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 26,628 to 28,022 GFF6450 GFF6451 - Ethanolamine ammonia-lyase light chain (EC 4.3.1.7), at 28,019 to 28,774 GFF6451 GFF6452 - Putative diheme cytochrome c-553, at 28,786 to 30,180 GFF6452 Position (kb) 26 27 28 29Strain fitness (log2 ratio) -2 -1 0 1at 25.684 kb on - strand, within GFF6448at 25.684 kb on - strand, within GFF6448at 25.684 kb on - strand, within GFF6448at 25.905 kb on + strand, within GFF6448at 25.905 kb on + strand, within GFF6448at 25.906 kb on - strand, within GFF6448at 25.906 kb on - strand, within GFF6448at 25.906 kb on - strand, within GFF6448at 26.046 kb on + strandat 26.046 kb on + strandat 26.046 kb on + strandat 26.046 kb on + strandat 26.052 kb on + strandat 26.053 kb on - strandat 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.285 kb on + strand, within GFF6449at 26.286 kb on - strand, within GFF6449at 26.286 kb on - strand, within GFF6449at 26.286 kb on - strand, within GFF6449at 26.286 kb on - strand, within GFF6449at 26.330 kb on + strand, within GFF6449at 26.393 kb on + strand, within GFF6449at 26.393 kb on + strand, within GFF6449at 26.393 kb on + strand, within GFF6449at 26.394 kb on - strand, within GFF6449at 26.394 kb on - strand, within GFF6449at 26.394 kb on - strand, within GFF6449at 26.634 kb on + strandat 26.721 kb on + strandat 26.721 kb on + strandat 26.722 kb on - strandat 26.722 kb on - strandat 26.826 kb on + strand, within GFF6450at 27.175 kb on - strand, within GFF6450at 27.175 kb on - strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.483 kb on + strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.484 kb on - strand, within GFF6450at 27.565 kb on - strand, within GFF6450at 27.582 kb on + strand, within GFF6450at 27.582 kb on + strand, within GFF6450at 27.582 kb on + strand, within GFF6450at 27.631 kb on - strand, within GFF6450at 27.631 kb on - strand, within GFF6450at 27.636 kb on + strand, within GFF6450at 27.723 kb on + strand, within GFF6450at 27.724 kb on - strand, within GFF6450at 27.724 kb on - strand, within GFF6450at 27.841 kb on - strand, within GFF6450at 28.265 kb on + strand, within GFF6451at 28.265 kb on + strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.266 kb on - strand, within GFF6451at 28.297 kb on - strand, within GFF6451at 28.338 kb on - strand, within GFF6451at 28.586 kb on + strand, within GFF6451at 28.586 kb on + strand, within GFF6451at 28.586 kb on + strand, within GFF6451at 28.587 kb on - strand, within GFF6451at 28.648 kb on - strand, within GFF6451at 28.667 kb on + strand, within GFF6451at 28.667 kb on + strand, within GFF6451at 28.667 kb on + strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.668 kb on - strand, within GFF6451at 28.772 kb on + strandat 28.773 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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25,684 - GFF6448 0.76 +0.0
25,684 - GFF6448 0.76 +0.3
25,684 - GFF6448 0.76 -0.8
25,905 + GFF6448 0.90 +0.5
25,905 + GFF6448 0.90 -0.6
25,906 - GFF6448 0.90 -1.2
25,906 - GFF6448 0.90 -0.8
25,906 - GFF6448 0.90 -0.5
26,046 + +0.1
26,046 + +0.4
26,046 + +0.3
26,046 + +0.6
26,052 + -0.8
26,053 - -0.9
26,285 + GFF6449 0.50 -0.2
26,285 + GFF6449 0.50 +0.1
26,285 + GFF6449 0.50 +0.5
26,285 + GFF6449 0.50 +1.7
26,285 + GFF6449 0.50 -0.4
26,285 + GFF6449 0.50 -0.4
26,286 - GFF6449 0.50 -0.9
26,286 - GFF6449 0.50 +0.5
26,286 - GFF6449 0.50 +0.0
26,286 - GFF6449 0.50 +0.4
26,330 + GFF6449 0.61 -1.1
26,393 + GFF6449 0.76 +0.3
26,393 + GFF6449 0.76 +0.8
26,393 + GFF6449 0.76 -0.8
26,394 - GFF6449 0.76 -0.1
26,394 - GFF6449 0.76 -1.8
26,394 - GFF6449 0.76 -0.6
26,634 + -1.3
26,721 + -1.1
26,721 + +0.5
26,722 - -0.9
26,722 - -1.4
26,826 + GFF6450 0.14 -1.1
27,175 - GFF6450 0.39 +0.6
27,175 - GFF6450 0.39 -0.7
27,483 + GFF6450 0.61 +0.4
27,483 + GFF6450 0.61 +0.1
27,483 + GFF6450 0.61 +0.1
27,483 + GFF6450 0.61 -0.4
27,483 + GFF6450 0.61 +0.3
27,483 + GFF6450 0.61 -0.4
27,484 - GFF6450 0.61 -0.8
27,484 - GFF6450 0.61 -0.2
27,484 - GFF6450 0.61 -1.2
27,484 - GFF6450 0.61 -1.4
27,484 - GFF6450 0.61 -0.6
27,484 - GFF6450 0.61 -0.2
27,565 - GFF6450 0.67 -1.8
27,582 + GFF6450 0.68 +0.4
27,582 + GFF6450 0.68 -0.0
27,582 + GFF6450 0.68 +0.2
27,631 - GFF6450 0.72 -0.7
27,631 - GFF6450 0.72 -0.9
27,636 + GFF6450 0.72 -0.2
27,723 + GFF6450 0.78 -0.4
27,724 - GFF6450 0.79 -0.6
27,724 - GFF6450 0.79 -0.2
27,841 - GFF6450 0.87 -0.8
28,265 + GFF6451 0.33 +0.8
28,265 + GFF6451 0.33 +0.7
28,266 - GFF6451 0.33 +0.1
28,266 - GFF6451 0.33 +0.7
28,266 - GFF6451 0.33 +0.1
28,266 - GFF6451 0.33 -0.2
28,266 - GFF6451 0.33 -0.3
28,266 - GFF6451 0.33 -0.3
28,297 - GFF6451 0.37 -0.2
28,338 - GFF6451 0.42 -0.2
28,586 + GFF6451 0.75 +0.3
28,586 + GFF6451 0.75 -1.1
28,586 + GFF6451 0.75 +0.7
28,587 - GFF6451 0.75 -0.2
28,648 - GFF6451 0.83 -0.8
28,667 + GFF6451 0.86 -0.8
28,667 + GFF6451 0.86 -0.6
28,667 + GFF6451 0.86 -0.8
28,668 - GFF6451 0.86 +0.5
28,668 - GFF6451 0.86 -0.5
28,668 - GFF6451 0.86 +0.0
28,668 - GFF6451 0.86 -0.7
28,668 - GFF6451 0.86 +0.1
28,772 + -0.7
28,773 - -0.4

Or see this region's nucleotide sequence