Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF638 and GFF639 are separated by 118 nucleotides GFF639 and GFF640 are separated by 7 nucleotides GFF640 and GFF641 are separated by 112 nucleotides GFF641 and GFF642 are separated by 173 nucleotides
GFF638 - Two-component transcriptional response regulator, LuxR family, at 690,171 to 691,043
GFF638
GFF639 - hypothetical protein, at 691,162 to 691,932
GFF639
GFF640 - no description, at 691,940 to 692,419
GFF640
GFF641 - no description, at 692,532 to 693,050
GFF641
GFF642 - Membrane protease family protein BA0301, at 693,224 to 694,120
GFF642
Position (kb) 691
692
693 Strain fitness (log2 ratio) -2
-1
0
1
2 at 691.082 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.106 kb on + strand at 691.204 kb on + strand at 691.204 kb on + strand at 691.204 kb on + strand at 691.205 kb on - strand at 691.205 kb on - strand at 691.310 kb on - strand, within GFF639 at 691.336 kb on + strand, within GFF639 at 691.336 kb on + strand, within GFF639 at 691.337 kb on - strand, within GFF639 at 691.337 kb on - strand, within GFF639 at 691.351 kb on + strand, within GFF639 at 691.351 kb on + strand, within GFF639 at 691.352 kb on - strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.450 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.636 kb on + strand, within GFF639 at 691.636 kb on + strand, within GFF639 at 691.636 kb on + strand, within GFF639 at 691.637 kb on - strand, within GFF639 at 691.637 kb on - strand, within GFF639 at 691.735 kb on + strand, within GFF639 at 691.735 kb on + strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.786 kb on + strand, within GFF639 at 691.897 kb on + strand at 691.898 kb on - strand at 691.898 kb on - strand at 691.900 kb on + strand at 691.900 kb on + strand at 692.005 kb on - strand, within GFF640 at 692.005 kb on - strand, within GFF640 at 692.221 kb on - strand, within GFF640 at 692.221 kb on - strand, within GFF640 at 692.518 kb on - strand at 692.518 kb on - strand at 692.534 kb on - strand at 692.860 kb on + strand, within GFF641 at 693.043 kb on - strand at 693.043 kb on - strand at 693.043 kb on - strand at 693.099 kb on - strand at 693.099 kb on - strand at 693.275 kb on + strand at 693.275 kb on + strand at 693.276 kb on - strand at 693.294 kb on - strand at 693.419 kb on + strand, within GFF642 at 693.419 kb on + strand, within GFF642 at 693.419 kb on + strand, within GFF642 at 693.419 kb on + strand, within GFF642 at 693.419 kb on + strand, within GFF642 at 693.419 kb on + strand, within GFF642
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 691,082 - -0.0 691,105 - +0.4 691,105 - -0.3 691,105 - +0.4 691,105 - -0.2 691,106 + -1.5 691,204 + +0.4 691,204 + +0.5 691,204 + -0.2 691,205 - -0.1 691,205 - -0.4 691,310 - GFF639 0.19 -0.0 691,336 + GFF639 0.23 -0.5 691,336 + GFF639 0.23 -0.5 691,337 - GFF639 0.23 -0.5 691,337 - GFF639 0.23 +0.1 691,351 + GFF639 0.25 -1.4 691,351 + GFF639 0.25 +0.1 691,352 - GFF639 0.25 -1.0 691,447 + GFF639 0.37 +0.4 691,447 + GFF639 0.37 -0.6 691,447 + GFF639 0.37 -0.5 691,447 + GFF639 0.37 +0.2 691,450 + GFF639 0.37 +0.2 691,615 + GFF639 0.59 -0.9 691,615 + GFF639 0.59 -1.3 691,615 + GFF639 0.59 -0.8 691,615 + GFF639 0.59 -0.9 691,615 + GFF639 0.59 -0.3 691,615 + GFF639 0.59 +0.2 691,616 - GFF639 0.59 +0.9 691,616 - GFF639 0.59 -0.3 691,616 - GFF639 0.59 +2.0 691,616 - GFF639 0.59 -0.2 691,636 + GFF639 0.61 +0.1 691,636 + GFF639 0.61 +0.1 691,636 + GFF639 0.61 -0.5 691,637 - GFF639 0.62 +0.2 691,637 - GFF639 0.62 +1.1 691,735 + GFF639 0.74 -0.3 691,735 + GFF639 0.74 -0.3 691,736 - GFF639 0.74 -0.0 691,736 - GFF639 0.74 +1.2 691,736 - GFF639 0.74 +0.0 691,736 - GFF639 0.74 +0.1 691,786 + GFF639 0.81 +1.5 691,897 + -0.2 691,898 - -0.5 691,898 - -0.3 691,900 + -0.8 691,900 + +0.2 692,005 - GFF640 0.14 -0.7 692,005 - GFF640 0.14 -0.7 692,221 - GFF640 0.59 -0.1 692,221 - GFF640 0.59 -1.0 692,518 - +0.5 692,518 - +1.4 692,534 - -1.7 692,860 + GFF641 0.63 -0.8 693,043 - -2.2 693,043 - -1.6 693,043 - -0.7 693,099 - +1.2 693,099 - +0.1 693,275 + -0.4 693,275 + -0.3 693,276 - -0.6 693,294 - -1.1 693,419 + GFF642 0.22 -0.7 693,419 + GFF642 0.22 -0.1 693,419 + GFF642 0.22 -0.3 693,419 + GFF642 0.22 -0.1 693,419 + GFF642 0.22 -0.0 693,419 + GFF642 0.22 +0.2
Or see this region's nucleotide sequence