Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6254 and GFF6255 are separated by 105 nucleotides GFF6255 and GFF6256 overlap by 4 nucleotides GFF6256 and GFF6257 overlap by 4 nucleotides
GFF6254 - Phosphonate ABC transporter ATP-binding protein PhnC (TC 3.A.1.9.1), at 47,871 to 48,728
GFF6254
GFF6255 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase (EC 3.6.1.63), at 48,834 to 49,988
GFF6255
GFF6256 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL (EC 2.7.8.37), at 49,985 to 50,698
GFF6256
GFF6257 - Phosphonates utilization ATP-binding protein PhnK, at 50,695 to 51,483
GFF6257
Position (kb) 48
49
50 Strain fitness (log2 ratio) -2
-1
0
1
2 at 47.980 kb on + strand, within GFF6254 at 47.981 kb on - strand, within GFF6254 at 48.070 kb on + strand, within GFF6254 at 48.070 kb on + strand, within GFF6254 at 48.071 kb on - strand, within GFF6254 at 49.075 kb on + strand, within GFF6255 at 49.075 kb on + strand, within GFF6255 at 49.327 kb on + strand, within GFF6255 at 49.361 kb on - strand, within GFF6255 at 49.407 kb on - strand, within GFF6255 at 49.435 kb on + strand, within GFF6255 at 49.436 kb on - strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.438 kb on + strand, within GFF6255 at 49.439 kb on - strand, within GFF6255 at 49.439 kb on - strand, within GFF6255 at 49.439 kb on - strand, within GFF6255 at 49.439 kb on - strand, within GFF6255 at 49.439 kb on - strand, within GFF6255 at 49.447 kb on - strand, within GFF6255 at 49.462 kb on + strand, within GFF6255 at 50.451 kb on - strand, within GFF6256 at 50.451 kb on - strand, within GFF6256 at 50.514 kb on + strand, within GFF6256 at 50.515 kb on - strand, within GFF6256 at 50.523 kb on + strand, within GFF6256 at 50.523 kb on + strand, within GFF6256 at 50.523 kb on + strand, within GFF6256 at 50.625 kb on - strand, within GFF6256 at 50.732 kb on + strand at 50.732 kb on + strand at 50.732 kb on + strand at 50.733 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 47,980 + GFF6254 0.13 -0.1 47,981 - GFF6254 0.13 -0.5 48,070 + GFF6254 0.23 -0.4 48,070 + GFF6254 0.23 +0.9 48,071 - GFF6254 0.23 -0.1 49,075 + GFF6255 0.21 +2.2 49,075 + GFF6255 0.21 -0.4 49,327 + GFF6255 0.43 +0.1 49,361 - GFF6255 0.46 -0.2 49,407 - GFF6255 0.50 +0.1 49,435 + GFF6255 0.52 +0.2 49,436 - GFF6255 0.52 +1.0 49,438 + GFF6255 0.52 +0.3 49,438 + GFF6255 0.52 +0.0 49,438 + GFF6255 0.52 +0.9 49,438 + GFF6255 0.52 -0.5 49,438 + GFF6255 0.52 -1.3 49,438 + GFF6255 0.52 -0.4 49,438 + GFF6255 0.52 -0.2 49,439 - GFF6255 0.52 +1.1 49,439 - GFF6255 0.52 +0.5 49,439 - GFF6255 0.52 -0.4 49,439 - GFF6255 0.52 +0.3 49,439 - GFF6255 0.52 -1.9 49,447 - GFF6255 0.53 -0.9 49,462 + GFF6255 0.54 -0.4 50,451 - GFF6256 0.65 -0.2 50,451 - GFF6256 0.65 -0.9 50,514 + GFF6256 0.74 +0.6 50,515 - GFF6256 0.74 +0.8 50,523 + GFF6256 0.75 -1.3 50,523 + GFF6256 0.75 +0.1 50,523 + GFF6256 0.75 -1.3 50,625 - GFF6256 0.90 -0.4 50,732 + -0.2 50,732 + -0.6 50,732 + -0.2 50,733 - -0.2
Or see this region's nucleotide sequence