Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6223 and GFF6224 overlap by 4 nucleotides GFF6224 and GFF6225 are separated by 130 nucleotides
GFF6223 - T6SS outer membrane component TssL (ImpK/VasF) / OmpA/MotB domain, at 4,336 to 5,664
GFF6223
GFF6224 - T6SS component TssK (ImpJ/VasE), at 5,661 to 6,992
GFF6224
GFF6225 - ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates), at 7,123 to 8,187
GFF6225
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.862 kb on + strand, within GFF6223 at 4.863 kb on - strand, within GFF6223 at 4.863 kb on - strand, within GFF6223 at 4.880 kb on + strand, within GFF6223 at 4.880 kb on + strand, within GFF6223 at 4.881 kb on - strand, within GFF6223 at 5.141 kb on + strand, within GFF6223 at 5.141 kb on + strand, within GFF6223 at 5.141 kb on + strand, within GFF6223 at 5.141 kb on + strand, within GFF6223 at 5.142 kb on - strand, within GFF6223 at 5.327 kb on + strand, within GFF6223 at 5.328 kb on - strand, within GFF6223 at 5.328 kb on - strand, within GFF6223 at 5.785 kb on + strand at 5.786 kb on - strand at 6.133 kb on + strand, within GFF6224 at 6.133 kb on + strand, within GFF6224 at 6.133 kb on + strand, within GFF6224 at 6.133 kb on + strand, within GFF6224 at 6.134 kb on - strand, within GFF6224 at 6.134 kb on - strand, within GFF6224 at 6.134 kb on - strand, within GFF6224 at 6.644 kb on - strand, within GFF6224 at 6.644 kb on - strand, within GFF6224 at 6.872 kb on - strand at 6.872 kb on - strand at 7.072 kb on - strand at 7.079 kb on - strand at 7.112 kb on + strand at 7.112 kb on + strand at 7.113 kb on - strand at 7.163 kb on + strand at 7.163 kb on + strand at 7.163 kb on + strand at 7.163 kb on + strand at 7.164 kb on - strand at 7.164 kb on - strand at 7.165 kb on + strand at 7.250 kb on + strand, within GFF6225 at 7.250 kb on + strand, within GFF6225 at 7.298 kb on + strand, within GFF6225 at 7.305 kb on - strand, within GFF6225 at 7.916 kb on + strand, within GFF6225 at 7.916 kb on + strand, within GFF6225 at 7.916 kb on + strand, within GFF6225 at 7.916 kb on + strand, within GFF6225 at 7.917 kb on - strand, within GFF6225 at 7.917 kb on - strand, within GFF6225 at 7.917 kb on - strand, within GFF6225 at 7.931 kb on + strand, within GFF6225 at 7.931 kb on + strand, within GFF6225 at 7.932 kb on - strand, within GFF6225 at 7.932 kb on - strand, within GFF6225
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 4,862 + GFF6223 0.40 +1.0 4,862 + GFF6223 0.40 +0.8 4,862 + GFF6223 0.40 -0.3 4,862 + GFF6223 0.40 +0.1 4,862 + GFF6223 0.40 -1.1 4,862 + GFF6223 0.40 -0.8 4,862 + GFF6223 0.40 -0.1 4,862 + GFF6223 0.40 -0.4 4,862 + GFF6223 0.40 -0.4 4,863 - GFF6223 0.40 +0.2 4,863 - GFF6223 0.40 +0.4 4,880 + GFF6223 0.41 -1.0 4,880 + GFF6223 0.41 +1.1 4,881 - GFF6223 0.41 +0.2 5,141 + GFF6223 0.61 -0.2 5,141 + GFF6223 0.61 -0.3 5,141 + GFF6223 0.61 -0.7 5,141 + GFF6223 0.61 -0.2 5,142 - GFF6223 0.61 -0.2 5,327 + GFF6223 0.75 -0.2 5,328 - GFF6223 0.75 -2.0 5,328 - GFF6223 0.75 -0.1 5,785 + -0.0 5,786 - -0.8 6,133 + GFF6224 0.35 +0.4 6,133 + GFF6224 0.35 +0.1 6,133 + GFF6224 0.35 +1.4 6,133 + GFF6224 0.35 -0.5 6,134 - GFF6224 0.36 +1.1 6,134 - GFF6224 0.36 -0.4 6,134 - GFF6224 0.36 +0.2 6,644 - GFF6224 0.74 +0.3 6,644 - GFF6224 0.74 -0.5 6,872 - +0.8 6,872 - +0.5 7,072 - +0.2 7,079 - +0.4 7,112 + -0.1 7,112 + -0.2 7,113 - -0.3 7,163 + +0.6 7,163 + -0.8 7,163 + -1.5 7,163 + -0.2 7,164 - -0.3 7,164 - +1.2 7,165 + -1.7 7,250 + GFF6225 0.12 +0.5 7,250 + GFF6225 0.12 -0.4 7,298 + GFF6225 0.16 +0.7 7,305 - GFF6225 0.17 +0.1 7,916 + GFF6225 0.74 -0.6 7,916 + GFF6225 0.74 -1.0 7,916 + GFF6225 0.74 -0.6 7,916 + GFF6225 0.74 -0.3 7,917 - GFF6225 0.75 -1.5 7,917 - GFF6225 0.75 +0.9 7,917 - GFF6225 0.75 +0.8 7,931 + GFF6225 0.76 +0.2 7,931 + GFF6225 0.76 +0.2 7,932 - GFF6225 0.76 +0.9 7,932 - GFF6225 0.76 +0.2
Or see this region's nucleotide sequence