Strain Fitness in Variovorax sp. SCN45 around GFF6214

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6213 and GFF6214 are separated by 26 nucleotidesGFF6214 and GFF6215 are separated by 56 nucleotidesGFF6215 and GFF6216 are separated by 59 nucleotides GFF6213 - Ornithine cyclodeaminase (EC 4.3.1.12), at 120,050 to 121,099 GFF6213 GFF6214 - Amidinotransferase family protein, at 121,126 to 122,085 GFF6214 GFF6215 - no description, at 122,142 to 122,873 GFF6215 GFF6216 - hypothetical protein, at 122,933 to 124,864 GFF6216 Position (kb) 121 122 123Strain fitness (log2 ratio) -2 -1 0 1 2 3at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.245 kb on + strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.246 kb on - strand, within GFF6213at 120.257 kb on + strand, within GFF6213at 120.257 kb on + strand, within GFF6213at 120.257 kb on + strand, within GFF6213at 120.258 kb on - strand, within GFF6213at 120.296 kb on + strand, within GFF6213at 120.296 kb on + strand, within GFF6213at 120.296 kb on + strand, within GFF6213at 120.296 kb on + strand, within GFF6213at 120.297 kb on - strand, within GFF6213at 120.297 kb on - strand, within GFF6213at 120.298 kb on + strand, within GFF6213at 120.298 kb on + strand, within GFF6213at 120.298 kb on + strand, within GFF6213at 120.299 kb on - strand, within GFF6213at 120.299 kb on - strand, within GFF6213at 120.299 kb on - strand, within GFF6213at 120.578 kb on + strand, within GFF6213at 120.578 kb on + strand, within GFF6213at 120.579 kb on - strand, within GFF6213at 120.579 kb on - strand, within GFF6213at 120.579 kb on - strand, within GFF6213at 120.579 kb on - strand, within GFF6213at 120.668 kb on + strand, within GFF6213at 120.669 kb on - strand, within GFF6213at 120.669 kb on - strand, within GFF6213at 120.794 kb on + strand, within GFF6213at 120.794 kb on + strand, within GFF6213at 120.795 kb on - strand, within GFF6213at 120.795 kb on - strand, within GFF6213at 120.795 kb on - strand, within GFF6213at 120.870 kb on + strand, within GFF6213at 120.870 kb on + strand, within GFF6213at 120.870 kb on + strand, within GFF6213at 120.871 kb on - strand, within GFF6213at 120.871 kb on - strand, within GFF6213at 120.871 kb on - strand, within GFF6213at 120.950 kb on + strand, within GFF6213at 120.950 kb on + strand, within GFF6213at 120.950 kb on + strand, within GFF6213at 120.950 kb on + strand, within GFF6213at 120.950 kb on + strand, within GFF6213at 120.950 kb on + strand, within GFF6213at 120.951 kb on - strand, within GFF6213at 120.951 kb on - strand, within GFF6213at 120.951 kb on - strand, within GFF6213at 120.951 kb on - strand, within GFF6213at 120.951 kb on - strand, within GFF6213at 120.951 kb on - strand, within GFF6213at 120.951 kb on - strand, within GFF6213at 120.965 kb on + strand, within GFF6213at 120.966 kb on - strand, within GFF6213at 120.966 kb on - strand, within GFF6213at 120.966 kb on - strand, within GFF6213at 121.420 kb on + strand, within GFF6214at 121.421 kb on - strand, within GFF6214at 121.421 kb on - strand, within GFF6214at 121.421 kb on - strand, within GFF6214at 121.421 kb on - strand, within GFF6214at 121.421 kb on - strand, within GFF6214at 121.421 kb on - strand, within GFF6214at 121.421 kb on - strand, within GFF6214at 121.429 kb on + strand, within GFF6214at 121.429 kb on + strand, within GFF6214at 121.429 kb on + strand, within GFF6214at 121.429 kb on + strand, within GFF6214at 121.429 kb on + strand, within GFF6214at 121.429 kb on + strand, within GFF6214at 121.430 kb on - strand, within GFF6214at 121.430 kb on - strand, within GFF6214at 121.430 kb on - strand, within GFF6214at 121.430 kb on - strand, within GFF6214at 121.430 kb on - strand, within GFF6214at 121.430 kb on - strand, within GFF6214at 121.430 kb on - strand, within GFF6214at 121.489 kb on + strand, within GFF6214at 121.489 kb on + strand, within GFF6214at 121.490 kb on - strand, within GFF6214at 121.490 kb on - strand, within GFF6214at 121.490 kb on - strand, within GFF6214at 121.513 kb on + strand, within GFF6214at 121.514 kb on - strand, within GFF6214at 121.591 kb on + strand, within GFF6214at 121.591 kb on + strand, within GFF6214at 121.592 kb on - strand, within GFF6214at 121.592 kb on - strand, within GFF6214at 121.592 kb on - strand, within GFF6214at 121.593 kb on + strand, within GFF6214at 121.593 kb on + strand, within GFF6214at 121.593 kb on + strand, within GFF6214at 121.593 kb on + strand, within GFF6214at 121.702 kb on + strand, within GFF6214at 121.702 kb on + strand, within GFF6214at 121.703 kb on - strand, within GFF6214at 121.703 kb on - strand, within GFF6214at 121.703 kb on - strand, within GFF6214at 121.703 kb on - strand, within GFF6214at 121.703 kb on - strand, within GFF6214at 121.703 kb on - strand, within GFF6214at 121.703 kb on - strand, within GFF6214at 121.703 kb on - strand, within GFF6214at 121.703 kb on - strand, within GFF6214at 121.703 kb on - strand, within GFF6214at 121.703 kb on - strand, within GFF6214at 121.703 kb on - strand, within GFF6214at 121.871 kb on + strand, within GFF6214at 121.871 kb on + strand, within GFF6214at 121.871 kb on + strand, within GFF6214at 121.872 kb on - strand, within GFF6214at 121.872 kb on - strand, within GFF6214at 121.872 kb on - strand, within GFF6214at 122.263 kb on + strand, within GFF6215at 122.536 kb on - strand, within GFF6215at 122.536 kb on - strand, within GFF6215at 122.536 kb on - strand, within GFF6215at 122.551 kb on + strand, within GFF6215at 122.551 kb on + strand, within GFF6215at 122.552 kb on - strand, within GFF6215at 122.552 kb on - strand, within GFF6215at 122.552 kb on - strand, within GFF6215at 122.552 kb on - strand, within GFF6215at 122.552 kb on - strand, within GFF6215at 122.552 kb on - strand, within GFF6215at 122.552 kb on - strand, within GFF6215at 122.552 kb on - strand, within GFF6215at 122.722 kb on + strand, within GFF6215at 122.722 kb on + strand, within GFF6215at 122.722 kb on + strand, within GFF6215at 122.723 kb on - strand, within GFF6215at 122.723 kb on - strand, within GFF6215at 122.723 kb on - strand, within GFF6215at 122.723 kb on - strand, within GFF6215at 122.731 kb on + strand, within GFF6215at 122.788 kb on + strand, within GFF6215at 122.788 kb on + strand, within GFF6215at 122.788 kb on + strand, within GFF6215at 122.788 kb on + strand, within GFF6215at 122.788 kb on + strand, within GFF6215at 122.788 kb on + strand, within GFF6215at 122.789 kb on - strand, within GFF6215at 122.789 kb on - strand, within GFF6215at 122.789 kb on - strand, within GFF6215at 122.789 kb on - strand, within GFF6215at 122.789 kb on - strand, within GFF6215at 122.789 kb on - strand, within GFF6215at 122.789 kb on - strand, within GFF6215at 122.789 kb on - strand, within GFF6215at 122.789 kb on - strand, within GFF6215at 122.790 kb on + strand, within GFF6215at 122.791 kb on - strand, within GFF6215at 122.791 kb on - strand, within GFF6215at 122.791 kb on - strand, within GFF6215at 122.791 kb on - strand, within GFF6215at 122.791 kb on - strand, within GFF6215at 122.830 kb on + strandat 122.830 kb on + strandat 122.831 kb on - strandat 122.838 kb on + strandat 122.839 kb on - strandat 122.839 kb on - strandat 122.864 kb on + strandat 122.865 kb on - strandat 122.865 kb on - strandat 122.880 kb on + strandat 122.881 kb on - strandat 122.881 kb on - strandat 122.881 kb on - strandat 122.881 kb on - strandat 122.881 kb on - strandat 122.881 kb on - strandat 122.881 kb on - strandat 122.881 kb on - strandat 122.881 kb on - strandat 122.954 kb on + strandat 122.954 kb on + strandat 122.954 kb on + strandat 122.954 kb on + strandat 122.954 kb on + strandat 122.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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120,245 + GFF6213 0.19 +0.1
120,245 + GFF6213 0.19 +0.1
120,245 + GFF6213 0.19 -0.3
120,245 + GFF6213 0.19 -0.4
120,245 + GFF6213 0.19 +0.2
120,245 + GFF6213 0.19 +0.0
120,245 + GFF6213 0.19 +0.7
120,245 + GFF6213 0.19 +0.3
120,245 + GFF6213 0.19 -0.5
120,245 + GFF6213 0.19 -0.1
120,245 + GFF6213 0.19 +1.1
120,245 + GFF6213 0.19 +0.3
120,245 + GFF6213 0.19 +0.3
120,245 + GFF6213 0.19 -0.5
120,245 + GFF6213 0.19 +0.1
120,245 + GFF6213 0.19 +0.7
120,245 + GFF6213 0.19 +0.8
120,246 - GFF6213 0.19 +0.5
120,246 - GFF6213 0.19 +0.0
120,246 - GFF6213 0.19 -0.3
120,246 - GFF6213 0.19 +2.4
120,246 - GFF6213 0.19 -0.1
120,246 - GFF6213 0.19 -0.6
120,246 - GFF6213 0.19 +0.8
120,246 - GFF6213 0.19 -0.6
120,246 - GFF6213 0.19 +0.4
120,246 - GFF6213 0.19 +0.4
120,246 - GFF6213 0.19 -0.3
120,246 - GFF6213 0.19 +0.2
120,246 - GFF6213 0.19 +0.3
120,246 - GFF6213 0.19 -0.2
120,246 - GFF6213 0.19 +0.4
120,246 - GFF6213 0.19 +1.8
120,257 + GFF6213 0.20 -0.1
120,257 + GFF6213 0.20 -0.1
120,257 + GFF6213 0.20 -0.9
120,258 - GFF6213 0.20 +1.4
120,296 + GFF6213 0.23 +0.3
120,296 + GFF6213 0.23 -0.6
120,296 + GFF6213 0.23 -1.0
120,296 + GFF6213 0.23 +1.4
120,297 - GFF6213 0.24 -0.0
120,297 - GFF6213 0.24 +0.1
120,298 + GFF6213 0.24 -0.6
120,298 + GFF6213 0.24 +1.1
120,298 + GFF6213 0.24 -0.2
120,299 - GFF6213 0.24 +0.9
120,299 - GFF6213 0.24 +0.7
120,299 - GFF6213 0.24 -0.9
120,578 + GFF6213 0.50 +0.5
120,578 + GFF6213 0.50 -0.6
120,579 - GFF6213 0.50 -0.6
120,579 - GFF6213 0.50 -0.1
120,579 - GFF6213 0.50 -0.3
120,579 - GFF6213 0.50 -0.4
120,668 + GFF6213 0.59 +1.4
120,669 - GFF6213 0.59 -0.8
120,669 - GFF6213 0.59 +1.3
120,794 + GFF6213 0.71 +1.3
120,794 + GFF6213 0.71 +0.0
120,795 - GFF6213 0.71 -0.5
120,795 - GFF6213 0.71 +1.5
120,795 - GFF6213 0.71 +0.1
120,870 + GFF6213 0.78 -1.0
120,870 + GFF6213 0.78 +0.6
120,870 + GFF6213 0.78 -0.6
120,871 - GFF6213 0.78 +0.3
120,871 - GFF6213 0.78 +0.6
120,871 - GFF6213 0.78 -2.1
120,950 + GFF6213 0.86 +0.1
120,950 + GFF6213 0.86 -0.8
120,950 + GFF6213 0.86 -0.6
120,950 + GFF6213 0.86 -0.3
120,950 + GFF6213 0.86 -0.2
120,950 + GFF6213 0.86 -0.3
120,951 - GFF6213 0.86 -0.1
120,951 - GFF6213 0.86 +0.4
120,951 - GFF6213 0.86 +0.3
120,951 - GFF6213 0.86 +0.0
120,951 - GFF6213 0.86 -1.0
120,951 - GFF6213 0.86 +0.5
120,951 - GFF6213 0.86 -0.3
120,965 + GFF6213 0.87 +0.1
120,966 - GFF6213 0.87 +1.1
120,966 - GFF6213 0.87 +0.1
120,966 - GFF6213 0.87 -0.3
121,420 + GFF6214 0.31 +0.3
121,421 - GFF6214 0.31 -0.3
121,421 - GFF6214 0.31 +0.1
121,421 - GFF6214 0.31 -0.9
121,421 - GFF6214 0.31 -0.2
121,421 - GFF6214 0.31 -0.8
121,421 - GFF6214 0.31 -0.1
121,421 - GFF6214 0.31 +1.0
121,429 + GFF6214 0.32 -0.6
121,429 + GFF6214 0.32 -0.5
121,429 + GFF6214 0.32 +0.8
121,429 + GFF6214 0.32 -0.3
121,429 + GFF6214 0.32 -0.1
121,429 + GFF6214 0.32 -0.2
121,430 - GFF6214 0.32 -1.0
121,430 - GFF6214 0.32 -0.1
121,430 - GFF6214 0.32 -0.6
121,430 - GFF6214 0.32 +0.0
121,430 - GFF6214 0.32 +3.3
121,430 - GFF6214 0.32 -0.1
121,430 - GFF6214 0.32 +0.8
121,489 + GFF6214 0.38 -0.9
121,489 + GFF6214 0.38 +0.2
121,490 - GFF6214 0.38 +0.2
121,490 - GFF6214 0.38 -0.2
121,490 - GFF6214 0.38 -0.2
121,513 + GFF6214 0.40 +0.7
121,514 - GFF6214 0.40 +0.8
121,591 + GFF6214 0.48 -0.3
121,591 + GFF6214 0.48 +0.1
121,592 - GFF6214 0.49 -0.9
121,592 - GFF6214 0.49 +0.3
121,592 - GFF6214 0.49 -0.1
121,593 + GFF6214 0.49 +0.4
121,593 + GFF6214 0.49 -0.1
121,593 + GFF6214 0.49 -0.7
121,593 + GFF6214 0.49 +0.5
121,702 + GFF6214 0.60 -0.3
121,702 + GFF6214 0.60 +1.3
121,703 - GFF6214 0.60 -0.3
121,703 - GFF6214 0.60 -1.8
121,703 - GFF6214 0.60 -1.1
121,703 - GFF6214 0.60 -0.2
121,703 - GFF6214 0.60 -1.6
121,703 - GFF6214 0.60 -0.1
121,703 - GFF6214 0.60 -0.3
121,703 - GFF6214 0.60 -0.9
121,703 - GFF6214 0.60 +0.6
121,703 - GFF6214 0.60 -0.1
121,703 - GFF6214 0.60 +1.7
121,703 - GFF6214 0.60 -0.1
121,871 + GFF6214 0.78 -0.2
121,871 + GFF6214 0.78 +0.9
121,871 + GFF6214 0.78 +1.5
121,872 - GFF6214 0.78 +0.2
121,872 - GFF6214 0.78 -0.6
121,872 - GFF6214 0.78 -0.5
122,263 + GFF6215 0.17 -0.1
122,536 - GFF6215 0.54 -0.2
122,536 - GFF6215 0.54 -1.5
122,536 - GFF6215 0.54 -0.7
122,551 + GFF6215 0.56 -0.4
122,551 + GFF6215 0.56 +0.5
122,552 - GFF6215 0.56 -0.4
122,552 - GFF6215 0.56 -0.4
122,552 - GFF6215 0.56 -1.0
122,552 - GFF6215 0.56 -0.5
122,552 - GFF6215 0.56 +0.6
122,552 - GFF6215 0.56 +0.7
122,552 - GFF6215 0.56 +0.3
122,552 - GFF6215 0.56 +1.1
122,722 + GFF6215 0.79 +0.7
122,722 + GFF6215 0.79 -1.1
122,722 + GFF6215 0.79 -0.2
122,723 - GFF6215 0.79 -0.1
122,723 - GFF6215 0.79 +0.2
122,723 - GFF6215 0.79 +0.8
122,723 - GFF6215 0.79 -0.0
122,731 + GFF6215 0.80 -0.7
122,788 + GFF6215 0.88 -0.5
122,788 + GFF6215 0.88 -0.7
122,788 + GFF6215 0.88 +0.7
122,788 + GFF6215 0.88 +0.2
122,788 + GFF6215 0.88 -0.2
122,788 + GFF6215 0.88 -0.3
122,789 - GFF6215 0.88 -0.6
122,789 - GFF6215 0.88 -0.6
122,789 - GFF6215 0.88 -0.0
122,789 - GFF6215 0.88 -0.6
122,789 - GFF6215 0.88 +0.5
122,789 - GFF6215 0.88 -0.3
122,789 - GFF6215 0.88 -0.6
122,789 - GFF6215 0.88 +0.5
122,789 - GFF6215 0.88 +0.3
122,790 + GFF6215 0.89 +0.4
122,791 - GFF6215 0.89 -0.8
122,791 - GFF6215 0.89 +0.2
122,791 - GFF6215 0.89 -0.8
122,791 - GFF6215 0.89 +0.4
122,791 - GFF6215 0.89 +0.6
122,830 + +0.7
122,830 + -0.7
122,831 - -0.2
122,838 + -0.9
122,839 - -0.6
122,839 - +0.2
122,864 + +1.4
122,865 - -0.6
122,865 - -0.4
122,880 + -0.4
122,881 - -0.4
122,881 - +1.2
122,881 - -0.4
122,881 - +0.2
122,881 - -0.5
122,881 - +1.7
122,881 - +0.1
122,881 - -0.6
122,881 - -0.1
122,954 + +0.6
122,954 + +0.0
122,954 + +1.4
122,954 + +0.1
122,954 + +0.1
122,962 - -0.2

Or see this region's nucleotide sequence