Strain Fitness in Variovorax sp. SCN45 around GFF6155

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6153 and GFF6154 are separated by 183 nucleotidesGFF6154 and GFF6155 are separated by 10 nucleotidesGFF6155 and GFF6156 are separated by 40 nucleotidesGFF6156 and GFF6157 are separated by 150 nucleotides GFF6153 - Transcriptional activator of acetoin/glycerol metabolism, at 57,884 to 59,026 GFF6153 GFF6154 - Aerobic carbon monoxide dehydrogenase (quinone), small chain (EC 1.2.5.3), at 59,210 to 59,707 GFF6154 GFF6155 - Aerobic carbon monoxide dehydrogenase (quinone), large chain (EC 1.2.5.3), at 59,718 to 62,108 GFF6155 GFF6156 - Aerobic carbon monoxide dehydrogenase (quinone), medium chain (EC 1.2.5.3), at 62,149 to 62,943 GFF6156 GFF6157 - Carbon monoxide oxidation accessory protein CoxD, at 63,094 to 63,996 GFF6157 Position (kb) 59 60 61 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 59.134 kb on + strandat 59.135 kb on - strandat 59.139 kb on + strandat 59.140 kb on - strandat 59.140 kb on - strandat 59.781 kb on + strandat 59.781 kb on + strandat 59.808 kb on + strandat 59.808 kb on + strandat 59.808 kb on + strandat 59.809 kb on - strandat 59.809 kb on - strandat 60.057 kb on + strand, within GFF6155at 60.058 kb on - strand, within GFF6155at 60.058 kb on - strand, within GFF6155at 60.058 kb on - strand, within GFF6155at 60.138 kb on + strand, within GFF6155at 60.231 kb on + strand, within GFF6155at 60.231 kb on + strand, within GFF6155at 60.231 kb on + strand, within GFF6155at 60.231 kb on + strand, within GFF6155at 60.231 kb on + strand, within GFF6155at 60.231 kb on + strand, within GFF6155at 60.232 kb on - strand, within GFF6155at 60.232 kb on - strand, within GFF6155at 60.232 kb on - strand, within GFF6155at 60.363 kb on + strand, within GFF6155at 60.364 kb on - strand, within GFF6155at 60.364 kb on - strand, within GFF6155at 60.384 kb on + strand, within GFF6155at 60.384 kb on + strand, within GFF6155at 60.385 kb on - strand, within GFF6155at 60.393 kb on + strand, within GFF6155at 60.393 kb on + strand, within GFF6155at 60.393 kb on + strand, within GFF6155at 60.393 kb on + strand, within GFF6155at 60.393 kb on + strand, within GFF6155at 60.393 kb on + strand, within GFF6155at 60.393 kb on + strand, within GFF6155at 60.394 kb on - strand, within GFF6155at 60.394 kb on - strand, within GFF6155at 60.394 kb on - strand, within GFF6155at 60.394 kb on - strand, within GFF6155at 60.394 kb on - strand, within GFF6155at 60.394 kb on - strand, within GFF6155at 60.394 kb on - strand, within GFF6155at 60.394 kb on - strand, within GFF6155at 60.522 kb on + strand, within GFF6155at 60.522 kb on + strand, within GFF6155at 60.522 kb on + strand, within GFF6155at 60.523 kb on - strand, within GFF6155at 60.714 kb on + strand, within GFF6155at 60.714 kb on + strand, within GFF6155at 60.715 kb on - strand, within GFF6155at 60.715 kb on - strand, within GFF6155at 60.753 kb on + strand, within GFF6155at 60.753 kb on + strand, within GFF6155at 60.777 kb on + strand, within GFF6155at 60.777 kb on + strand, within GFF6155at 60.778 kb on - strand, within GFF6155at 60.778 kb on - strand, within GFF6155at 60.795 kb on + strand, within GFF6155at 60.795 kb on + strand, within GFF6155at 60.795 kb on + strand, within GFF6155at 60.795 kb on + strand, within GFF6155at 60.796 kb on - strand, within GFF6155at 60.796 kb on - strand, within GFF6155at 60.796 kb on - strand, within GFF6155at 60.843 kb on + strand, within GFF6155at 60.873 kb on + strand, within GFF6155at 60.874 kb on - strand, within GFF6155at 60.990 kb on + strand, within GFF6155at 60.990 kb on + strand, within GFF6155at 60.991 kb on - strand, within GFF6155at 60.991 kb on - strand, within GFF6155at 60.991 kb on - strand, within GFF6155at 61.116 kb on + strand, within GFF6155at 61.116 kb on + strand, within GFF6155at 61.116 kb on + strand, within GFF6155at 61.117 kb on - strand, within GFF6155at 61.117 kb on - strand, within GFF6155at 61.368 kb on + strand, within GFF6155at 61.369 kb on - strand, within GFF6155at 61.560 kb on + strand, within GFF6155at 61.560 kb on + strand, within GFF6155at 61.575 kb on + strand, within GFF6155at 61.576 kb on - strand, within GFF6155at 61.576 kb on - strand, within GFF6155at 61.576 kb on - strand, within GFF6155at 61.576 kb on - strand, within GFF6155at 61.576 kb on - strand, within GFF6155at 61.576 kb on - strand, within GFF6155at 61.620 kb on + strand, within GFF6155at 61.621 kb on - strand, within GFF6155at 61.621 kb on - strand, within GFF6155at 61.621 kb on - strand, within GFF6155at 61.656 kb on + strand, within GFF6155at 61.656 kb on + strand, within GFF6155at 61.656 kb on + strand, within GFF6155at 61.656 kb on + strand, within GFF6155at 61.656 kb on + strand, within GFF6155at 61.657 kb on - strand, within GFF6155at 61.657 kb on - strand, within GFF6155at 61.657 kb on - strand, within GFF6155at 61.657 kb on - strand, within GFF6155at 61.821 kb on + strand, within GFF6155at 61.821 kb on + strand, within GFF6155at 61.821 kb on + strand, within GFF6155at 61.822 kb on - strand, within GFF6155at 61.822 kb on - strand, within GFF6155at 61.866 kb on + strand, within GFF6155at 61.866 kb on + strand, within GFF6155at 61.866 kb on + strand, within GFF6155at 61.867 kb on - strand, within GFF6155at 62.152 kb on + strandat 62.152 kb on + strandat 62.152 kb on + strandat 62.152 kb on + strandat 62.152 kb on + strandat 62.152 kb on + strandat 62.152 kb on + strandat 62.152 kb on + strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.544 kb on + strand, within GFF6156at 62.544 kb on + strand, within GFF6156at 62.544 kb on + strand, within GFF6156at 62.545 kb on - strand, within GFF6156at 62.659 kb on + strand, within GFF6156at 62.941 kb on + strandat 62.941 kb on + strandat 62.941 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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59,134 + -1.5
59,135 - -1.6
59,139 + +1.1
59,140 - -0.1
59,140 - -0.6
59,781 + -0.3
59,781 + +0.6
59,808 + -0.3
59,808 + -1.3
59,808 + -0.2
59,809 - +0.6
59,809 - +0.7
60,057 + GFF6155 0.14 -0.1
60,058 - GFF6155 0.14 -0.9
60,058 - GFF6155 0.14 -0.1
60,058 - GFF6155 0.14 -0.1
60,138 + GFF6155 0.18 +0.4
60,231 + GFF6155 0.21 -0.2
60,231 + GFF6155 0.21 +0.3
60,231 + GFF6155 0.21 -0.3
60,231 + GFF6155 0.21 +0.4
60,231 + GFF6155 0.21 -0.4
60,231 + GFF6155 0.21 -0.5
60,232 - GFF6155 0.21 -0.5
60,232 - GFF6155 0.21 +1.7
60,232 - GFF6155 0.21 -2.8
60,363 + GFF6155 0.27 +0.2
60,364 - GFF6155 0.27 +0.1
60,364 - GFF6155 0.27 -0.1
60,384 + GFF6155 0.28 +0.7
60,384 + GFF6155 0.28 -0.7
60,385 - GFF6155 0.28 -0.8
60,393 + GFF6155 0.28 -0.2
60,393 + GFF6155 0.28 +0.4
60,393 + GFF6155 0.28 +1.1
60,393 + GFF6155 0.28 -1.5
60,393 + GFF6155 0.28 +0.1
60,393 + GFF6155 0.28 -0.4
60,393 + GFF6155 0.28 +1.4
60,394 - GFF6155 0.28 +0.2
60,394 - GFF6155 0.28 -0.5
60,394 - GFF6155 0.28 -0.6
60,394 - GFF6155 0.28 +0.7
60,394 - GFF6155 0.28 -0.8
60,394 - GFF6155 0.28 -0.2
60,394 - GFF6155 0.28 -0.1
60,394 - GFF6155 0.28 +0.5
60,522 + GFF6155 0.34 -0.9
60,522 + GFF6155 0.34 -0.1
60,522 + GFF6155 0.34 -0.6
60,523 - GFF6155 0.34 +0.4
60,714 + GFF6155 0.42 -1.2
60,714 + GFF6155 0.42 -0.6
60,715 - GFF6155 0.42 -0.4
60,715 - GFF6155 0.42 -0.7
60,753 + GFF6155 0.43 -0.8
60,753 + GFF6155 0.43 -0.7
60,777 + GFF6155 0.44 +0.0
60,777 + GFF6155 0.44 -0.0
60,778 - GFF6155 0.44 +1.0
60,778 - GFF6155 0.44 -0.6
60,795 + GFF6155 0.45 +0.5
60,795 + GFF6155 0.45 +0.2
60,795 + GFF6155 0.45 -0.0
60,795 + GFF6155 0.45 +1.2
60,796 - GFF6155 0.45 -0.3
60,796 - GFF6155 0.45 -1.8
60,796 - GFF6155 0.45 -1.4
60,843 + GFF6155 0.47 +0.5
60,873 + GFF6155 0.48 +0.6
60,874 - GFF6155 0.48 +0.2
60,990 + GFF6155 0.53 +0.7
60,990 + GFF6155 0.53 +0.2
60,991 - GFF6155 0.53 -0.5
60,991 - GFF6155 0.53 -1.6
60,991 - GFF6155 0.53 -0.5
61,116 + GFF6155 0.58 +2.7
61,116 + GFF6155 0.58 -0.5
61,116 + GFF6155 0.58 -1.4
61,117 - GFF6155 0.59 -0.9
61,117 - GFF6155 0.59 +0.5
61,368 + GFF6155 0.69 +0.1
61,369 - GFF6155 0.69 -0.2
61,560 + GFF6155 0.77 -0.6
61,560 + GFF6155 0.77 -0.4
61,575 + GFF6155 0.78 -0.6
61,576 - GFF6155 0.78 -1.0
61,576 - GFF6155 0.78 +1.4
61,576 - GFF6155 0.78 +0.3
61,576 - GFF6155 0.78 -0.1
61,576 - GFF6155 0.78 -0.4
61,576 - GFF6155 0.78 -1.1
61,620 + GFF6155 0.80 +0.2
61,621 - GFF6155 0.80 -1.0
61,621 - GFF6155 0.80 -0.4
61,621 - GFF6155 0.80 -0.9
61,656 + GFF6155 0.81 -0.3
61,656 + GFF6155 0.81 -0.4
61,656 + GFF6155 0.81 +1.1
61,656 + GFF6155 0.81 -0.3
61,656 + GFF6155 0.81 -0.2
61,657 - GFF6155 0.81 -0.3
61,657 - GFF6155 0.81 +0.7
61,657 - GFF6155 0.81 +1.1
61,657 - GFF6155 0.81 -0.8
61,821 + GFF6155 0.88 +0.3
61,821 + GFF6155 0.88 +0.4
61,821 + GFF6155 0.88 +0.0
61,822 - GFF6155 0.88 -0.9
61,822 - GFF6155 0.88 -0.5
61,866 + GFF6155 0.90 -0.1
61,866 + GFF6155 0.90 -1.0
61,866 + GFF6155 0.90 +1.0
61,867 - GFF6155 0.90 -0.7
62,152 + +1.1
62,152 + -0.9
62,152 + -0.1
62,152 + -0.6
62,152 + -1.1
62,152 + -0.9
62,152 + -0.4
62,152 + -0.5
62,153 - -1.3
62,153 - -0.1
62,153 - +1.0
62,153 - +0.0
62,153 - -0.8
62,153 - +0.6
62,153 - -0.3
62,153 - +0.1
62,153 - -0.1
62,153 - -0.4
62,153 - +0.5
62,153 - -0.1
62,544 + GFF6156 0.50 -0.5
62,544 + GFF6156 0.50 -0.2
62,544 + GFF6156 0.50 -0.5
62,545 - GFF6156 0.50 +1.2
62,659 + GFF6156 0.64 +0.0
62,941 + +0.3
62,941 + -0.3
62,941 + +0.5

Or see this region's nucleotide sequence