Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF613 and GFF614 overlap by 4 nucleotides GFF614 and GFF615 are separated by 76 nucleotides GFF615 and GFF616 are separated by 21 nucleotides GFF616 and GFF617 are separated by 175 nucleotides GFF617 and GFF618 overlap by 4 nucleotides
GFF613 - hypothetical protein, at 661,149 to 662,114
GFF613
GFF614 - no description, at 662,111 to 662,281
GFF614
GFF615 - beta-glucosidase (EC 3.2.1.21), at 662,358 to 664,643
GFF615
GFF616 - hypothetical protein, at 664,665 to 665,018
GFF616
GFF617 - no description, at 665,194 to 665,487
GFF617
GFF618 - Lactoylglutathione lyase and related lyases, at 665,484 to 665,834
GFF618
Position (kb) 662
663
664
665 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 661.395 kb on + strand, within GFF613 at 661.396 kb on - strand, within GFF613 at 661.443 kb on + strand, within GFF613 at 661.443 kb on + strand, within GFF613 at 661.444 kb on - strand, within GFF613 at 661.444 kb on - strand, within GFF613 at 661.446 kb on + strand, within GFF613 at 661.446 kb on + strand, within GFF613 at 661.447 kb on - strand, within GFF613 at 661.548 kb on - strand, within GFF613 at 661.605 kb on + strand, within GFF613 at 662.090 kb on - strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.095 kb on + strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.096 kb on - strand at 662.296 kb on - strand at 662.350 kb on - strand at 663.039 kb on + strand, within GFF615 at 663.066 kb on + strand, within GFF615 at 663.109 kb on - strand, within GFF615 at 663.264 kb on + strand, within GFF615 at 663.372 kb on + strand, within GFF615 at 663.372 kb on + strand, within GFF615 at 663.372 kb on + strand, within GFF615 at 663.372 kb on + strand, within GFF615 at 663.372 kb on + strand, within GFF615 at 663.373 kb on - strand, within GFF615 at 663.373 kb on - strand, within GFF615 at 663.373 kb on - strand, within GFF615 at 663.382 kb on - strand, within GFF615 at 664.161 kb on + strand, within GFF615 at 664.161 kb on + strand, within GFF615 at 664.161 kb on + strand, within GFF615 at 664.161 kb on + strand, within GFF615 at 664.162 kb on - strand, within GFF615 at 664.162 kb on - strand, within GFF615 at 664.162 kb on - strand, within GFF615 at 664.165 kb on - strand, within GFF615 at 664.296 kb on + strand, within GFF615 at 664.407 kb on + strand, within GFF615 at 664.408 kb on - strand, within GFF615 at 664.408 kb on - strand, within GFF615 at 665.034 kb on + strand at 665.041 kb on - strand at 665.041 kb on - strand at 665.049 kb on + strand at 665.050 kb on - strand at 665.059 kb on - strand at 665.068 kb on + strand at 665.068 kb on + strand at 665.068 kb on + strand at 665.072 kb on + strand at 665.072 kb on + strand at 665.073 kb on - strand at 665.073 kb on - strand at 665.094 kb on + strand at 665.094 kb on + strand at 665.157 kb on + strand at 665.157 kb on + strand at 665.158 kb on - strand at 665.216 kb on + strand at 665.217 kb on - strand at 665.217 kb on - strand at 665.260 kb on + strand, within GFF617 at 665.261 kb on - strand, within GFF617 at 665.261 kb on - strand, within GFF617 at 665.396 kb on + strand, within GFF617 at 665.547 kb on + strand, within GFF618
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 661,395 + GFF613 0.25 -0.5 661,396 - GFF613 0.26 -1.3 661,443 + GFF613 0.30 -0.1 661,443 + GFF613 0.30 +1.8 661,444 - GFF613 0.31 +0.0 661,444 - GFF613 0.31 -0.5 661,446 + GFF613 0.31 +0.2 661,446 + GFF613 0.31 -0.9 661,447 - GFF613 0.31 -0.0 661,548 - GFF613 0.41 -1.5 661,605 + GFF613 0.47 +0.0 662,090 - +0.1 662,095 + -1.8 662,095 + -0.6 662,095 + +0.5 662,095 + -0.5 662,095 + -0.6 662,095 + +0.7 662,095 + -0.5 662,095 + -0.0 662,096 - -0.0 662,096 - +0.1 662,096 - -0.6 662,096 - +1.0 662,096 - -0.7 662,096 - -1.2 662,096 - -0.2 662,096 - +0.7 662,096 - -0.2 662,096 - -0.3 662,096 - +1.4 662,096 - -0.9 662,296 - -0.4 662,350 - -1.0 663,039 + GFF615 0.30 +0.2 663,066 + GFF615 0.31 -0.7 663,109 - GFF615 0.33 +0.3 663,264 + GFF615 0.40 +0.7 663,372 + GFF615 0.44 +1.1 663,372 + GFF615 0.44 -0.9 663,372 + GFF615 0.44 -0.3 663,372 + GFF615 0.44 +0.8 663,372 + GFF615 0.44 -0.5 663,373 - GFF615 0.44 +1.4 663,373 - GFF615 0.44 -0.2 663,373 - GFF615 0.44 -0.4 663,382 - GFF615 0.45 +0.9 664,161 + GFF615 0.79 +0.2 664,161 + GFF615 0.79 +0.5 664,161 + GFF615 0.79 +0.5 664,161 + GFF615 0.79 +0.1 664,162 - GFF615 0.79 -0.3 664,162 - GFF615 0.79 -0.4 664,162 - GFF615 0.79 -0.4 664,165 - GFF615 0.79 -0.4 664,296 + GFF615 0.85 +0.3 664,407 + GFF615 0.90 -0.5 664,408 - GFF615 0.90 +1.0 664,408 - GFF615 0.90 -1.8 665,034 + -0.2 665,041 - +0.1 665,041 - -0.9 665,049 + -0.6 665,050 - -1.2 665,059 - +3.1 665,068 + +0.8 665,068 + +0.0 665,068 + -0.2 665,072 + -0.2 665,072 + -0.3 665,073 - +0.7 665,073 - -0.1 665,094 + -0.3 665,094 + -1.0 665,157 + +0.6 665,157 + +1.3 665,158 - -0.5 665,216 + +0.3 665,217 - +0.9 665,217 - -1.2 665,260 + GFF617 0.22 -0.3 665,261 - GFF617 0.23 +1.5 665,261 - GFF617 0.23 -0.1 665,396 + GFF617 0.69 +0.1 665,547 + GFF618 0.18 -0.6
Or see this region's nucleotide sequence