Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6117 and GFF6118 are separated by 203 nucleotides GFF6118 and GFF6119 are separated by 97 nucleotides
GFF6117 - Glycine/D-amino acid oxidases (deaminating), at 17,230 to 18,384
GFF6117
GFF6118 - Transcriptional regulator, MerR family, at 18,588 to 19,316
GFF6118
GFF6119 - Glutamate carboxypeptidase (EC 3.4.17.11), at 19,414 to 20,682
GFF6119
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.618 kb on + strand, within GFF6117 at 17.618 kb on + strand, within GFF6117 at 17.619 kb on - strand, within GFF6117 at 17.619 kb on - strand, within GFF6117 at 17.796 kb on - strand, within GFF6117 at 17.952 kb on - strand, within GFF6117 at 18.207 kb on - strand, within GFF6117 at 18.347 kb on + strand at 18.909 kb on + strand, within GFF6118 at 18.909 kb on + strand, within GFF6118 at 18.931 kb on - strand, within GFF6118 at 19.050 kb on + strand, within GFF6118 at 19.050 kb on + strand, within GFF6118 at 19.050 kb on + strand, within GFF6118 at 19.051 kb on - strand, within GFF6118 at 19.125 kb on + strand, within GFF6118 at 19.152 kb on + strand, within GFF6118 at 19.152 kb on + strand, within GFF6118 at 19.153 kb on - strand, within GFF6118 at 19.374 kb on + strand at 19.801 kb on + strand, within GFF6119 at 19.801 kb on + strand, within GFF6119 at 19.802 kb on - strand, within GFF6119 at 19.802 kb on - strand, within GFF6119 at 19.802 kb on - strand, within GFF6119 at 19.825 kb on + strand, within GFF6119 at 19.825 kb on + strand, within GFF6119 at 19.825 kb on + strand, within GFF6119 at 19.826 kb on - strand, within GFF6119 at 19.826 kb on - strand, within GFF6119 at 20.159 kb on - strand, within GFF6119 at 20.170 kb on + strand, within GFF6119 at 20.170 kb on + strand, within GFF6119 at 20.171 kb on - strand, within GFF6119
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 17,618 + GFF6117 0.34 -0.3 17,618 + GFF6117 0.34 +0.5 17,619 - GFF6117 0.34 +0.4 17,619 - GFF6117 0.34 -1.4 17,796 - GFF6117 0.49 -0.6 17,952 - GFF6117 0.63 -0.0 18,207 - GFF6117 0.85 +0.5 18,347 + +0.7 18,909 + GFF6118 0.44 +1.7 18,909 + GFF6118 0.44 -0.6 18,931 - GFF6118 0.47 -0.1 19,050 + GFF6118 0.63 -2.0 19,050 + GFF6118 0.63 -1.4 19,050 + GFF6118 0.63 -0.4 19,051 - GFF6118 0.64 -0.5 19,125 + GFF6118 0.74 -0.5 19,152 + GFF6118 0.77 +0.3 19,152 + GFF6118 0.77 +1.7 19,153 - GFF6118 0.78 +1.1 19,374 + +0.2 19,801 + GFF6119 0.30 -0.1 19,801 + GFF6119 0.30 -0.4 19,802 - GFF6119 0.31 -0.2 19,802 - GFF6119 0.31 +0.1 19,802 - GFF6119 0.31 -0.2 19,825 + GFF6119 0.32 -0.2 19,825 + GFF6119 0.32 +0.4 19,825 + GFF6119 0.32 -0.3 19,826 - GFF6119 0.32 +0.2 19,826 - GFF6119 0.32 +2.0 20,159 - GFF6119 0.59 -0.3 20,170 + GFF6119 0.60 -0.6 20,170 + GFF6119 0.60 -0.8 20,171 - GFF6119 0.60 -1.3
Or see this region's nucleotide sequence