Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF60 and GFF61 overlap by 8 nucleotides GFF61 and GFF62 are separated by 16 nucleotides
GFF60 - GDP-L-fucose synthetase (EC 1.1.1.271), at 75,995 to 76,942
GFF60
GFF61 - GDP-mannose 4,6-dehydratase (EC 4.2.1.47), at 76,935 to 78,059
GFF61
GFF62 - hypothetical protein, at 78,076 to 79,422
GFF62
Position (kb) 76
77
78
79 Strain fitness (log2 ratio) -1
0
1
2 at 75.965 kb on - strand at 76.130 kb on + strand, within GFF60 at 76.130 kb on + strand, within GFF60 at 76.130 kb on + strand, within GFF60 at 76.131 kb on - strand, within GFF60 at 76.131 kb on - strand, within GFF60 at 76.175 kb on + strand, within GFF60 at 76.176 kb on - strand, within GFF60 at 76.193 kb on + strand, within GFF60 at 76.194 kb on - strand, within GFF60 at 76.283 kb on + strand, within GFF60 at 76.283 kb on + strand, within GFF60 at 76.283 kb on + strand, within GFF60 at 76.283 kb on + strand, within GFF60 at 76.284 kb on - strand, within GFF60 at 76.358 kb on + strand, within GFF60 at 76.359 kb on - strand, within GFF60 at 76.400 kb on + strand, within GFF60 at 76.400 kb on + strand, within GFF60 at 76.400 kb on + strand, within GFF60 at 76.436 kb on + strand, within GFF60 at 76.437 kb on - strand, within GFF60 at 76.464 kb on - strand, within GFF60 at 76.481 kb on + strand, within GFF60 at 76.481 kb on + strand, within GFF60 at 76.482 kb on - strand, within GFF60 at 76.482 kb on - strand, within GFF60 at 76.482 kb on - strand, within GFF60 at 76.601 kb on + strand, within GFF60 at 76.601 kb on + strand, within GFF60 at 76.659 kb on - strand, within GFF60 at 76.983 kb on + strand at 76.984 kb on - strand at 76.984 kb on - strand at 76.984 kb on - strand at 77.077 kb on - strand, within GFF61 at 77.187 kb on + strand, within GFF61 at 77.188 kb on - strand, within GFF61 at 77.322 kb on + strand, within GFF61 at 77.323 kb on - strand, within GFF61 at 77.323 kb on - strand, within GFF61 at 77.347 kb on - strand, within GFF61 at 77.392 kb on - strand, within GFF61 at 77.424 kb on + strand, within GFF61 at 77.424 kb on + strand, within GFF61 at 77.448 kb on + strand, within GFF61 at 77.449 kb on - strand, within GFF61 at 77.460 kb on + strand, within GFF61 at 77.461 kb on - strand, within GFF61 at 77.461 kb on - strand, within GFF61 at 77.461 kb on - strand, within GFF61 at 77.469 kb on + strand, within GFF61 at 77.470 kb on - strand, within GFF61 at 77.634 kb on + strand, within GFF61 at 77.634 kb on + strand, within GFF61 at 77.682 kb on + strand, within GFF61 at 77.683 kb on - strand, within GFF61 at 77.683 kb on - strand, within GFF61 at 77.706 kb on + strand, within GFF61 at 78.247 kb on + strand, within GFF62 at 78.356 kb on - strand, within GFF62 at 78.356 kb on - strand, within GFF62 at 78.356 kb on - strand, within GFF62 at 78.356 kb on - strand, within GFF62 at 78.356 kb on - strand, within GFF62 at 78.356 kb on - strand, within GFF62
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 75,965 - -0.9 76,130 + GFF60 0.14 -0.1 76,130 + GFF60 0.14 +0.8 76,130 + GFF60 0.14 +1.5 76,131 - GFF60 0.14 +1.0 76,131 - GFF60 0.14 +0.1 76,175 + GFF60 0.19 +0.1 76,176 - GFF60 0.19 +0.3 76,193 + GFF60 0.21 -0.0 76,194 - GFF60 0.21 -1.7 76,283 + GFF60 0.30 -0.4 76,283 + GFF60 0.30 +1.0 76,283 + GFF60 0.30 -0.1 76,283 + GFF60 0.30 -0.8 76,284 - GFF60 0.30 -0.8 76,358 + GFF60 0.38 +2.2 76,359 - GFF60 0.38 -0.0 76,400 + GFF60 0.43 +0.1 76,400 + GFF60 0.43 +0.2 76,400 + GFF60 0.43 -0.3 76,436 + GFF60 0.47 +0.9 76,437 - GFF60 0.47 +0.7 76,464 - GFF60 0.49 +0.3 76,481 + GFF60 0.51 -0.4 76,481 + GFF60 0.51 +1.2 76,482 - GFF60 0.51 -0.6 76,482 - GFF60 0.51 -1.5 76,482 - GFF60 0.51 +1.3 76,601 + GFF60 0.64 -0.2 76,601 + GFF60 0.64 +0.7 76,659 - GFF60 0.70 -0.4 76,983 + -0.1 76,984 - +0.4 76,984 - +0.6 76,984 - -0.7 77,077 - GFF61 0.13 +0.4 77,187 + GFF61 0.22 +1.0 77,188 - GFF61 0.22 -0.0 77,322 + GFF61 0.34 -0.0 77,323 - GFF61 0.34 -0.7 77,323 - GFF61 0.34 -0.0 77,347 - GFF61 0.37 -0.4 77,392 - GFF61 0.41 -0.3 77,424 + GFF61 0.43 +0.4 77,424 + GFF61 0.43 -1.1 77,448 + GFF61 0.46 -0.3 77,449 - GFF61 0.46 -0.3 77,460 + GFF61 0.47 +0.9 77,461 - GFF61 0.47 +0.7 77,461 - GFF61 0.47 -0.7 77,461 - GFF61 0.47 -1.0 77,469 + GFF61 0.47 +0.1 77,470 - GFF61 0.48 +0.5 77,634 + GFF61 0.62 +0.2 77,634 + GFF61 0.62 -0.3 77,682 + GFF61 0.66 +0.3 77,683 - GFF61 0.66 +0.2 77,683 - GFF61 0.66 +1.0 77,706 + GFF61 0.69 +0.2 78,247 + GFF62 0.13 +0.6 78,356 - GFF62 0.21 -0.3 78,356 - GFF62 0.21 +0.5 78,356 - GFF62 0.21 +1.1 78,356 - GFF62 0.21 -0.9 78,356 - GFF62 0.21 -1.3 78,356 - GFF62 0.21 +0.3
Or see this region's nucleotide sequence