Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF590 and GFF591 are separated by 119 nucleotides GFF591 and GFF592 are separated by 7 nucleotides GFF592 and GFF593 overlap by 1 nucleotides
GFF590 - Transcriptional regulator, LysR family, at 636,557 to 637,501
GFF590
GFF591 - Renalase (EC 1.6.3.5), oxidases 1,2-dihydro- and 1,6-dihydro- beta-NAD(P)H isomers back to NAD(P), at 637,621 to 638,721
GFF591
GFF592 - Glutamyl-Q tRNA(Asp) synthetase, at 638,729 to 639,631
GFF592
GFF593 - tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33), at 639,631 to 640,389
GFF593
Position (kb) 637
638
639 Strain fitness (log2 ratio) -2
-1
0
1
2 at 636.678 kb on - strand, within GFF590 at 637.094 kb on + strand, within GFF590 at 637.095 kb on - strand, within GFF590 at 637.095 kb on - strand, within GFF590 at 637.328 kb on + strand, within GFF590 at 637.328 kb on + strand, within GFF590 at 637.328 kb on + strand, within GFF590 at 637.329 kb on - strand, within GFF590 at 637.329 kb on - strand, within GFF590 at 637.329 kb on - strand, within GFF590 at 637.530 kb on + strand at 637.567 kb on - strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.570 kb on + strand at 637.571 kb on - strand at 637.571 kb on - strand at 637.571 kb on - strand at 637.571 kb on - strand at 637.571 kb on - strand at 637.571 kb on - strand at 637.571 kb on - strand at 637.702 kb on + strand at 637.702 kb on + strand at 637.702 kb on + strand at 637.702 kb on + strand at 637.702 kb on + strand at 637.702 kb on + strand at 637.703 kb on - strand at 637.703 kb on - strand at 637.703 kb on - strand at 637.703 kb on - strand at 637.858 kb on + strand, within GFF591 at 637.858 kb on + strand, within GFF591 at 637.859 kb on - strand, within GFF591 at 638.164 kb on + strand, within GFF591 at 638.164 kb on + strand, within GFF591 at 638.165 kb on - strand, within GFF591 at 638.165 kb on - strand, within GFF591 at 638.165 kb on - strand, within GFF591 at 638.305 kb on + strand, within GFF591 at 638.528 kb on + strand, within GFF591 at 638.529 kb on - strand, within GFF591 at 638.978 kb on + strand, within GFF592 at 638.978 kb on + strand, within GFF592 at 638.978 kb on + strand, within GFF592 at 638.978 kb on + strand, within GFF592 at 638.979 kb on - strand, within GFF592 at 638.979 kb on - strand, within GFF592 at 639.104 kb on + strand, within GFF592 at 639.284 kb on + strand, within GFF592 at 639.284 kb on + strand, within GFF592 at 639.285 kb on - strand, within GFF592 at 639.285 kb on - strand, within GFF592 at 639.285 kb on - strand, within GFF592 at 639.413 kb on + strand, within GFF592 at 639.413 kb on + strand, within GFF592 at 639.413 kb on + strand, within GFF592 at 639.414 kb on - strand, within GFF592 at 639.414 kb on - strand, within GFF592 at 639.414 kb on - strand, within GFF592 at 639.614 kb on + strand at 639.615 kb on - strand at 639.630 kb on - strand at 639.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 636,678 - GFF590 0.13 +2.5 637,094 + GFF590 0.57 -1.6 637,095 - GFF590 0.57 +0.7 637,095 - GFF590 0.57 +0.2 637,328 + GFF590 0.82 -0.2 637,328 + GFF590 0.82 +0.2 637,328 + GFF590 0.82 -1.0 637,329 - GFF590 0.82 -0.3 637,329 - GFF590 0.82 -0.3 637,329 - GFF590 0.82 +0.8 637,530 + -0.4 637,567 - -0.5 637,570 + -0.8 637,570 + -0.8 637,570 + +0.0 637,570 + +0.5 637,570 + -0.6 637,570 + +1.0 637,570 + +0.1 637,570 + -0.8 637,570 + +1.0 637,570 + -0.1 637,571 - +0.9 637,571 - -1.4 637,571 - +0.2 637,571 - -0.2 637,571 - -0.6 637,571 - +1.1 637,571 - -0.9 637,702 + -0.6 637,702 + +0.0 637,702 + +1.1 637,702 + -0.0 637,702 + -0.8 637,702 + +0.1 637,703 - -0.3 637,703 - -1.3 637,703 - -2.0 637,703 - +0.5 637,858 + GFF591 0.22 +0.1 637,858 + GFF591 0.22 -1.0 637,859 - GFF591 0.22 -1.0 638,164 + GFF591 0.49 -0.1 638,164 + GFF591 0.49 +0.1 638,165 - GFF591 0.49 -1.0 638,165 - GFF591 0.49 -0.8 638,165 - GFF591 0.49 -1.0 638,305 + GFF591 0.62 -0.4 638,528 + GFF591 0.82 +0.5 638,529 - GFF591 0.82 -0.5 638,978 + GFF592 0.28 -0.6 638,978 + GFF592 0.28 -0.5 638,978 + GFF592 0.28 -0.0 638,978 + GFF592 0.28 -0.5 638,979 - GFF592 0.28 -0.2 638,979 - GFF592 0.28 +0.2 639,104 + GFF592 0.42 +0.2 639,284 + GFF592 0.61 -0.8 639,284 + GFF592 0.61 +0.3 639,285 - GFF592 0.62 +0.1 639,285 - GFF592 0.62 -0.4 639,285 - GFF592 0.62 +1.8 639,413 + GFF592 0.76 +1.0 639,413 + GFF592 0.76 -1.0 639,413 + GFF592 0.76 -1.0 639,414 - GFF592 0.76 +0.1 639,414 - GFF592 0.76 -0.8 639,414 - GFF592 0.76 +0.1 639,614 + +0.7 639,615 - -0.5 639,630 - +0.3 639,630 - -0.0
Or see this region's nucleotide sequence