Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5847 and GFF5848 overlap by 1 nucleotides GFF5848 and GFF5849 are separated by 13 nucleotides GFF5849 and GFF5850 are separated by 147 nucleotides
GFF5847 - putative membrane protein, at 24,091 to 26,745
GFF5847
GFF5848 - Flagellar motor protein, at 26,745 to 27,404
GFF5848
GFF5849 - FIG01210206: hypothetical protein, at 27,418 to 28,077
GFF5849
GFF5850 - Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68), at 28,225 to 29,625
GFF5850
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1
2 at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 27.099 kb on + strand, within GFF5848 at 27.099 kb on + strand, within GFF5848 at 27.099 kb on + strand, within GFF5848 at 27.100 kb on - strand, within GFF5848 at 27.100 kb on - strand, within GFF5848 at 27.100 kb on - strand, within GFF5848 at 27.583 kb on + strand, within GFF5849 at 27.934 kb on + strand, within GFF5849 at 27.934 kb on + strand, within GFF5849 at 27.934 kb on + strand, within GFF5849 at 27.935 kb on - strand, within GFF5849 at 27.955 kb on + strand, within GFF5849 at 27.955 kb on + strand, within GFF5849 at 27.956 kb on - strand, within GFF5849 at 27.956 kb on - strand, within GFF5849 at 27.956 kb on - strand, within GFF5849 at 28.576 kb on + strand, within GFF5850 at 28.577 kb on - strand, within GFF5850 at 28.585 kb on + strand, within GFF5850 at 28.586 kb on - strand, within GFF5850 at 28.586 kb on - strand, within GFF5850 at 28.908 kb on + strand, within GFF5850 at 28.975 kb on + strand, within GFF5850 at 28.975 kb on + strand, within GFF5850 at 28.976 kb on - strand, within GFF5850 at 28.976 kb on - strand, within GFF5850 at 28.976 kb on - strand, within GFF5850 at 29.044 kb on + strand, within GFF5850 at 29.044 kb on + strand, within GFF5850 at 29.044 kb on + strand, within GFF5850 at 29.074 kb on + strand, within GFF5850 at 29.074 kb on + strand, within GFF5850 at 29.074 kb on + strand, within GFF5850 at 29.075 kb on - strand, within GFF5850
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 26,632 + +1.8 26,632 + -0.4 26,632 + -0.9 26,632 + +0.7 26,632 + +0.5 26,632 + -0.7 26,633 - -0.5 26,633 - -0.2 26,633 - -0.2 26,633 - -0.6 26,633 - -0.6 26,633 - +1.0 27,099 + GFF5848 0.54 +0.8 27,099 + GFF5848 0.54 -0.1 27,099 + GFF5848 0.54 -0.6 27,100 - GFF5848 0.54 -0.5 27,100 - GFF5848 0.54 +1.2 27,100 - GFF5848 0.54 -0.5 27,583 + GFF5849 0.25 -1.0 27,934 + GFF5849 0.78 +0.1 27,934 + GFF5849 0.78 +0.3 27,934 + GFF5849 0.78 +0.0 27,935 - GFF5849 0.78 +0.2 27,955 + GFF5849 0.81 +0.0 27,955 + GFF5849 0.81 +0.5 27,956 - GFF5849 0.82 +1.0 27,956 - GFF5849 0.82 +0.6 27,956 - GFF5849 0.82 -0.3 28,576 + GFF5850 0.25 -0.1 28,577 - GFF5850 0.25 +0.8 28,585 + GFF5850 0.26 +0.6 28,586 - GFF5850 0.26 +0.3 28,586 - GFF5850 0.26 -0.4 28,908 + GFF5850 0.49 +0.7 28,975 + GFF5850 0.54 -0.3 28,975 + GFF5850 0.54 +0.8 28,976 - GFF5850 0.54 -0.3 28,976 - GFF5850 0.54 -1.2 28,976 - GFF5850 0.54 -0.2 29,044 + GFF5850 0.58 -0.3 29,044 + GFF5850 0.58 +0.2 29,044 + GFF5850 0.58 +0.6 29,074 + GFF5850 0.61 -0.0 29,074 + GFF5850 0.61 -0.2 29,074 + GFF5850 0.61 -0.5 29,075 - GFF5850 0.61 +0.2
Or see this region's nucleotide sequence