Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5815 and GFF5816 are separated by 37 nucleotides GFF5816 and GFF5817 are separated by 60 nucleotides
GFF5815 - Uncharacterized MFS-type transporter, at 194,187 to 195,401
GFF5815
GFF5816 - no description, at 195,439 to 196,311
GFF5816
GFF5817 - Two-component system sensor histidine kinase, at 196,372 to 197,745
GFF5817
Position (kb) 195
196
197 Strain fitness (log2 ratio) -2
-1
0
1
2 at 194.859 kb on + strand, within GFF5815 at 194.860 kb on - strand, within GFF5815 at 195.099 kb on + strand, within GFF5815 at 195.099 kb on + strand, within GFF5815 at 195.285 kb on + strand at 195.285 kb on + strand at 195.285 kb on + strand at 195.285 kb on + strand at 195.286 kb on - strand at 195.286 kb on - strand at 195.286 kb on - strand at 195.351 kb on + strand at 195.351 kb on + strand at 195.352 kb on - strand at 195.352 kb on - strand at 195.352 kb on - strand at 195.652 kb on + strand, within GFF5816 at 195.653 kb on - strand, within GFF5816 at 195.653 kb on - strand, within GFF5816 at 195.653 kb on - strand, within GFF5816 at 195.653 kb on - strand, within GFF5816 at 195.653 kb on - strand, within GFF5816 at 195.722 kb on + strand, within GFF5816 at 195.824 kb on + strand, within GFF5816 at 195.965 kb on + strand, within GFF5816 at 196.174 kb on + strand, within GFF5816 at 196.175 kb on - strand, within GFF5816 at 196.357 kb on + strand at 196.504 kb on + strand at 196.505 kb on - strand at 196.505 kb on - strand at 196.505 kb on - strand at 196.537 kb on + strand, within GFF5817 at 196.537 kb on + strand, within GFF5817 at 196.537 kb on + strand, within GFF5817 at 196.537 kb on + strand, within GFF5817 at 196.538 kb on - strand, within GFF5817 at 196.538 kb on - strand, within GFF5817 at 196.538 kb on - strand, within GFF5817 at 196.538 kb on - strand, within GFF5817 at 196.538 kb on - strand, within GFF5817 at 196.538 kb on - strand, within GFF5817 at 196.573 kb on + strand, within GFF5817 at 196.573 kb on + strand, within GFF5817 at 196.574 kb on - strand, within GFF5817 at 196.639 kb on + strand, within GFF5817 at 196.666 kb on + strand, within GFF5817 at 196.667 kb on - strand, within GFF5817 at 196.756 kb on + strand, within GFF5817 at 196.757 kb on - strand, within GFF5817 at 196.804 kb on + strand, within GFF5817 at 196.805 kb on - strand, within GFF5817
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 194,859 + GFF5815 0.55 +2.0 194,860 - GFF5815 0.55 -0.8 195,099 + GFF5815 0.75 -0.6 195,099 + GFF5815 0.75 -0.4 195,285 + -0.9 195,285 + +0.2 195,285 + -0.3 195,285 + -1.5 195,286 - -0.9 195,286 - +1.3 195,286 - +0.3 195,351 + +1.8 195,351 + -0.1 195,352 - +1.1 195,352 - -0.7 195,352 - -0.6 195,652 + GFF5816 0.24 -0.8 195,653 - GFF5816 0.25 +0.2 195,653 - GFF5816 0.25 -0.1 195,653 - GFF5816 0.25 -0.5 195,653 - GFF5816 0.25 +0.7 195,653 - GFF5816 0.25 -1.2 195,722 + GFF5816 0.32 -0.8 195,824 + GFF5816 0.44 -0.2 195,965 + GFF5816 0.60 -0.4 196,174 + GFF5816 0.84 -0.5 196,175 - GFF5816 0.84 +1.0 196,357 + +0.4 196,504 + -0.8 196,505 - -0.3 196,505 - +0.2 196,505 - -0.2 196,537 + GFF5817 0.12 -1.2 196,537 + GFF5817 0.12 -1.0 196,537 + GFF5817 0.12 -0.5 196,537 + GFF5817 0.12 -2.0 196,538 - GFF5817 0.12 -0.0 196,538 - GFF5817 0.12 +0.4 196,538 - GFF5817 0.12 -1.4 196,538 - GFF5817 0.12 -0.1 196,538 - GFF5817 0.12 -0.3 196,538 - GFF5817 0.12 -1.4 196,573 + GFF5817 0.15 +1.2 196,573 + GFF5817 0.15 +0.4 196,574 - GFF5817 0.15 -1.6 196,639 + GFF5817 0.19 -0.4 196,666 + GFF5817 0.21 -1.2 196,667 - GFF5817 0.21 +0.5 196,756 + GFF5817 0.28 -0.4 196,757 - GFF5817 0.28 -0.6 196,804 + GFF5817 0.31 +0.2 196,805 - GFF5817 0.32 -0.2
Or see this region's nucleotide sequence