Strain Fitness in Variovorax sp. SCN45 around GFF5805

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5804 and GFF5805 are separated by 27 nucleotidesGFF5805 and GFF5806 overlap by 14 nucleotidesGFF5806 and GFF5807 are separated by 157 nucleotides GFF5804 - FIG00978734: hypothetical protein, at 179,751 to 181,004 GFF5804 GFF5805 - Putative transmembrane protein, at 181,032 to 181,718 GFF5805 GFF5806 - RNA polymerase ECF-type sigma factor, at 181,705 to 182,280 GFF5806 GFF5807 - hypothetical protein, at 182,438 to 183,685 GFF5807 Position (kb) 181 182Strain fitness (log2 ratio) -2 -1 0 1 2at 180.102 kb on + strand, within GFF5804at 180.102 kb on + strand, within GFF5804at 180.102 kb on + strand, within GFF5804at 180.102 kb on + strand, within GFF5804at 180.102 kb on + strand, within GFF5804at 180.102 kb on + strand, within GFF5804at 180.103 kb on - strand, within GFF5804at 180.153 kb on + strand, within GFF5804at 180.153 kb on + strand, within GFF5804at 180.153 kb on + strand, within GFF5804at 180.153 kb on + strand, within GFF5804at 180.153 kb on + strand, within GFF5804at 180.154 kb on - strand, within GFF5804at 180.154 kb on - strand, within GFF5804at 180.154 kb on - strand, within GFF5804at 180.154 kb on - strand, within GFF5804at 180.154 kb on - strand, within GFF5804at 180.492 kb on + strand, within GFF5804at 180.493 kb on - strand, within GFF5804at 180.493 kb on - strand, within GFF5804at 180.493 kb on - strand, within GFF5804at 180.648 kb on + strand, within GFF5804at 181.033 kb on + strandat 181.162 kb on + strand, within GFF5805at 181.162 kb on + strand, within GFF5805at 181.162 kb on + strand, within GFF5805at 181.258 kb on + strand, within GFF5805at 181.291 kb on + strand, within GFF5805at 181.291 kb on + strand, within GFF5805at 181.291 kb on + strand, within GFF5805at 181.292 kb on - strand, within GFF5805at 181.292 kb on - strand, within GFF5805at 181.889 kb on + strand, within GFF5806at 181.890 kb on - strand, within GFF5806at 182.066 kb on + strand, within GFF5806at 182.067 kb on - strand, within GFF5806at 182.150 kb on + strand, within GFF5806at 182.150 kb on + strand, within GFF5806at 182.150 kb on + strand, within GFF5806at 182.151 kb on - strand, within GFF5806at 182.151 kb on - strand, within GFF5806at 182.320 kb on + strandat 182.352 kb on - strandat 182.352 kb on - strandat 182.531 kb on + strandat 182.531 kb on + strandat 182.531 kb on + strandat 182.531 kb on + strandat 182.532 kb on - strandat 182.532 kb on - strandat 182.532 kb on - strandat 182.532 kb on - strandat 182.532 kb on - strandat 182.532 kb on - strandat 182.532 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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180,102 + GFF5804 0.28 -0.5
180,102 + GFF5804 0.28 -0.2
180,102 + GFF5804 0.28 -0.4
180,102 + GFF5804 0.28 -0.2
180,102 + GFF5804 0.28 -0.5
180,102 + GFF5804 0.28 -1.5
180,103 - GFF5804 0.28 +0.2
180,153 + GFF5804 0.32 -0.7
180,153 + GFF5804 0.32 -0.5
180,153 + GFF5804 0.32 +0.1
180,153 + GFF5804 0.32 -1.4
180,153 + GFF5804 0.32 -0.0
180,154 - GFF5804 0.32 -0.1
180,154 - GFF5804 0.32 -0.6
180,154 - GFF5804 0.32 +0.4
180,154 - GFF5804 0.32 -0.2
180,154 - GFF5804 0.32 -1.5
180,492 + GFF5804 0.59 -1.3
180,493 - GFF5804 0.59 +0.3
180,493 - GFF5804 0.59 +0.6
180,493 - GFF5804 0.59 +0.5
180,648 + GFF5804 0.72 +0.6
181,033 + +0.4
181,162 + GFF5805 0.19 +0.5
181,162 + GFF5805 0.19 -0.1
181,162 + GFF5805 0.19 +0.6
181,258 + GFF5805 0.33 -0.5
181,291 + GFF5805 0.38 +1.3
181,291 + GFF5805 0.38 -0.2
181,291 + GFF5805 0.38 +0.1
181,292 - GFF5805 0.38 +0.1
181,292 - GFF5805 0.38 +0.8
181,889 + GFF5806 0.32 -0.5
181,890 - GFF5806 0.32 -0.4
182,066 + GFF5806 0.63 -0.5
182,067 - GFF5806 0.63 -0.4
182,150 + GFF5806 0.77 -1.4
182,150 + GFF5806 0.77 +0.4
182,150 + GFF5806 0.77 -0.4
182,151 - GFF5806 0.77 -0.7
182,151 - GFF5806 0.77 -2.4
182,320 + -0.1
182,352 - +0.4
182,352 - +0.1
182,531 + -0.4
182,531 + -0.4
182,531 + -0.5
182,531 + -1.0
182,532 - -1.2
182,532 - +2.5
182,532 - +0.1
182,532 - -0.2
182,532 - -0.3
182,532 - +0.4
182,532 - -0.2

Or see this region's nucleotide sequence