Strain Fitness in Variovorax sp. SCN45 around GFF5801

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5800 and GFF5801 overlap by 4 nucleotidesGFF5801 and GFF5802 overlap by 4 nucleotides GFF5800 - Urea ABC transporter, permease protein UrtB, at 175,096 to 176,643 GFF5800 GFF5801 - Urea ABC transporter, permease protein UrtC, at 176,640 to 177,857 GFF5801 GFF5802 - Urea ABC transporter, ATPase protein UrtD, at 177,854 to 178,732 GFF5802 Position (kb) 176 177 178Strain fitness (log2 ratio) -2 -1 0 1at 175.820 kb on - strand, within GFF5800at 175.820 kb on - strand, within GFF5800at 175.877 kb on - strand, within GFF5800at 175.877 kb on - strand, within GFF5800at 175.885 kb on + strand, within GFF5800at 175.886 kb on - strand, within GFF5800at 175.913 kb on - strand, within GFF5800at 175.913 kb on - strand, within GFF5800at 175.913 kb on - strand, within GFF5800at 175.939 kb on + strand, within GFF5800at 175.939 kb on + strand, within GFF5800at 175.939 kb on + strand, within GFF5800at 175.939 kb on + strand, within GFF5800at 175.940 kb on - strand, within GFF5800at 176.335 kb on + strand, within GFF5800at 176.335 kb on + strand, within GFF5800at 176.336 kb on - strand, within GFF5800at 176.336 kb on - strand, within GFF5800at 176.336 kb on - strand, within GFF5800at 176.425 kb on + strand, within GFF5800at 176.425 kb on + strand, within GFF5800at 176.425 kb on + strand, within GFF5800at 176.425 kb on + strand, within GFF5800at 176.426 kb on - strand, within GFF5800at 176.426 kb on - strand, within GFF5800at 176.488 kb on + strand, within GFF5800at 176.489 kb on - strandat 176.788 kb on - strand, within GFF5801at 176.788 kb on - strand, within GFF5801at 176.820 kb on + strand, within GFF5801at 176.820 kb on + strand, within GFF5801at 176.910 kb on + strand, within GFF5801at 176.926 kb on - strand, within GFF5801at 176.926 kb on - strand, within GFF5801at 176.926 kb on - strand, within GFF5801at 176.926 kb on - strand, within GFF5801at 176.958 kb on + strand, within GFF5801at 176.959 kb on - strand, within GFF5801at 176.959 kb on - strand, within GFF5801at 177.053 kb on - strand, within GFF5801at 177.129 kb on + strand, within GFF5801at 177.130 kb on - strand, within GFF5801at 177.418 kb on - strand, within GFF5801at 177.474 kb on + strand, within GFF5801at 177.474 kb on + strand, within GFF5801at 177.651 kb on + strand, within GFF5801at 178.010 kb on + strand, within GFF5802at 178.011 kb on - strand, within GFF5802at 178.845 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
175,820 - GFF5800 0.47 -0.6
175,820 - GFF5800 0.47 -0.5
175,877 - GFF5800 0.50 -0.8
175,877 - GFF5800 0.50 -1.8
175,885 + GFF5800 0.51 -0.5
175,886 - GFF5800 0.51 -0.2
175,913 - GFF5800 0.53 -0.7
175,913 - GFF5800 0.53 -0.2
175,913 - GFF5800 0.53 -0.0
175,939 + GFF5800 0.54 -0.2
175,939 + GFF5800 0.54 -0.2
175,939 + GFF5800 0.54 +0.9
175,939 + GFF5800 0.54 -0.1
175,940 - GFF5800 0.55 -0.0
176,335 + GFF5800 0.80 -0.2
176,335 + GFF5800 0.80 +0.6
176,336 - GFF5800 0.80 -0.4
176,336 - GFF5800 0.80 +1.4
176,336 - GFF5800 0.80 +1.0
176,425 + GFF5800 0.86 +0.2
176,425 + GFF5800 0.86 -0.5
176,425 + GFF5800 0.86 -0.0
176,425 + GFF5800 0.86 -0.1
176,426 - GFF5800 0.86 -0.3
176,426 - GFF5800 0.86 +0.2
176,488 + GFF5800 0.90 +0.8
176,489 - -0.7
176,788 - GFF5801 0.12 -0.6
176,788 - GFF5801 0.12 -0.4
176,820 + GFF5801 0.15 +0.3
176,820 + GFF5801 0.15 -0.1
176,910 + GFF5801 0.22 -0.8
176,926 - GFF5801 0.23 -0.6
176,926 - GFF5801 0.23 +0.8
176,926 - GFF5801 0.23 -0.3
176,926 - GFF5801 0.23 -0.5
176,958 + GFF5801 0.26 -0.8
176,959 - GFF5801 0.26 -1.2
176,959 - GFF5801 0.26 +1.3
177,053 - GFF5801 0.34 -1.1
177,129 + GFF5801 0.40 -0.6
177,130 - GFF5801 0.40 -0.6
177,418 - GFF5801 0.64 -0.2
177,474 + GFF5801 0.68 -0.5
177,474 + GFF5801 0.68 -0.4
177,651 + GFF5801 0.83 -1.1
178,010 + GFF5802 0.18 -0.2
178,011 - GFF5802 0.18 +0.6
178,845 + +0.5

Or see this region's nucleotide sequence