Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5718 and GFF5719 are separated by 43 nucleotides GFF5719 and GFF5720 are separated by 76 nucleotides GFF5720 and GFF5721 overlap by 1 nucleotides
GFF5718 - Flagellar hook protein FlgE, at 87,544 to 88,764
GFF5718
GFF5719 - Flagellar basal-body rod protein FlgF, at 88,808 to 89,554
GFF5719
GFF5720 - Flagellar basal-body rod protein FlgG, at 89,631 to 90,413
GFF5720
GFF5721 - Flagellar L-ring protein FlgH, at 90,413 to 91,120
GFF5721
Position (kb) 88
89
90 Strain fitness (log2 ratio) -2
-1
0
1
2 at 87.826 kb on + strand, within GFF5718 at 87.826 kb on + strand, within GFF5718 at 87.827 kb on - strand, within GFF5718 at 87.827 kb on - strand, within GFF5718 at 87.865 kb on + strand, within GFF5718 at 88.103 kb on - strand, within GFF5718 at 88.138 kb on + strand, within GFF5718 at 88.180 kb on + strand, within GFF5718 at 88.180 kb on + strand, within GFF5718 at 88.697 kb on - strand at 88.824 kb on - strand at 88.824 kb on - strand at 88.824 kb on - strand at 88.824 kb on - strand at 88.824 kb on - strand at 88.824 kb on - strand at 89.102 kb on + strand, within GFF5719 at 89.103 kb on - strand, within GFF5719 at 89.546 kb on + strand at 89.646 kb on + strand at 89.646 kb on + strand at 89.767 kb on - strand, within GFF5720 at 89.970 kb on + strand, within GFF5720 at 90.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 87,826 + GFF5718 0.23 +0.3 87,826 + GFF5718 0.23 -0.1 87,827 - GFF5718 0.23 -0.8 87,827 - GFF5718 0.23 +0.5 87,865 + GFF5718 0.26 +0.4 88,103 - GFF5718 0.46 -0.7 88,138 + GFF5718 0.49 +0.8 88,180 + GFF5718 0.52 -0.7 88,180 + GFF5718 0.52 +0.2 88,697 - +0.3 88,824 - +0.5 88,824 - +0.0 88,824 - +0.8 88,824 - +1.8 88,824 - -2.4 88,824 - -0.0 89,102 + GFF5719 0.39 +0.1 89,103 - GFF5719 0.39 +0.6 89,546 + -0.8 89,646 + +0.1 89,646 + +0.5 89,767 - GFF5720 0.17 -0.2 89,970 + GFF5720 0.43 +0.3 90,361 - -0.2
Or see this region's nucleotide sequence