Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5710 and GFF5711 are separated by 50 nucleotides GFF5711 and GFF5712 overlap by 4 nucleotides GFF5712 and GFF5713 are separated by 91 nucleotides
GFF5710 - no description, at 83,272 to 84,096
GFF5710
GFF5711 - hypothetical protein, at 84,147 to 84,611
GFF5711
GFF5712 - no description, at 84,608 to 84,916
GFF5712
GFF5713 - Flagellar basal-body P-ring formation protein FlgA, at 85,008 to 85,724
GFF5713
Position (kb) 84
85 Strain fitness (log2 ratio) -2
-1
0
1
2 at 83.273 kb on + strand at 83.388 kb on - strand, within GFF5710 at 83.388 kb on - strand, within GFF5710 at 83.399 kb on + strand, within GFF5710 at 83.399 kb on + strand, within GFF5710 at 83.400 kb on - strand, within GFF5710 at 83.651 kb on + strand, within GFF5710 at 83.652 kb on - strand, within GFF5710 at 83.652 kb on - strand, within GFF5710 at 83.652 kb on - strand, within GFF5710 at 83.652 kb on - strand, within GFF5710 at 83.652 kb on - strand, within GFF5710 at 83.652 kb on - strand, within GFF5710 at 84.096 kb on + strand at 84.097 kb on - strand at 84.271 kb on + strand, within GFF5711 at 84.271 kb on + strand, within GFF5711 at 84.271 kb on + strand, within GFF5711 at 84.271 kb on + strand, within GFF5711 at 84.272 kb on - strand, within GFF5711 at 84.272 kb on - strand, within GFF5711 at 84.272 kb on - strand, within GFF5711 at 84.272 kb on - strand, within GFF5711 at 84.404 kb on - strand, within GFF5711 at 84.404 kb on - strand, within GFF5711 at 84.501 kb on - strand, within GFF5711 at 84.504 kb on + strand, within GFF5711 at 84.504 kb on + strand, within GFF5711 at 84.941 kb on + strand at 84.941 kb on + strand at 84.942 kb on - strand at 84.942 kb on - strand at 84.943 kb on + strand at 84.944 kb on - strand at 84.944 kb on - strand at 84.944 kb on - strand at 84.944 kb on - strand at 85.009 kb on + strand at 85.009 kb on + strand at 85.010 kb on - strand at 85.378 kb on + strand, within GFF5713 at 85.378 kb on + strand, within GFF5713 at 85.378 kb on + strand, within GFF5713 at 85.379 kb on - strand, within GFF5713 at 85.379 kb on - strand, within GFF5713 at 85.379 kb on - strand, within GFF5713 at 85.379 kb on - strand, within GFF5713 at 85.588 kb on + strand, within GFF5713 at 85.588 kb on + strand, within GFF5713 at 85.588 kb on + strand, within GFF5713
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 83,273 + -0.8 83,388 - GFF5710 0.14 -0.8 83,388 - GFF5710 0.14 +0.5 83,399 + GFF5710 0.15 -0.2 83,399 + GFF5710 0.15 -0.0 83,400 - GFF5710 0.16 +1.8 83,651 + GFF5710 0.46 -0.5 83,652 - GFF5710 0.46 -0.5 83,652 - GFF5710 0.46 -1.0 83,652 - GFF5710 0.46 -0.5 83,652 - GFF5710 0.46 -0.6 83,652 - GFF5710 0.46 +0.8 83,652 - GFF5710 0.46 +0.4 84,096 + -0.2 84,097 - -1.0 84,271 + GFF5711 0.27 +0.4 84,271 + GFF5711 0.27 -1.2 84,271 + GFF5711 0.27 -0.0 84,271 + GFF5711 0.27 +0.3 84,272 - GFF5711 0.27 +1.1 84,272 - GFF5711 0.27 +0.4 84,272 - GFF5711 0.27 -0.6 84,272 - GFF5711 0.27 +0.5 84,404 - GFF5711 0.55 +0.1 84,404 - GFF5711 0.55 +1.2 84,501 - GFF5711 0.76 +1.1 84,504 + GFF5711 0.77 -0.4 84,504 + GFF5711 0.77 +0.2 84,941 + -0.1 84,941 + -0.0 84,942 - +0.3 84,942 - -0.0 84,943 + -0.0 84,944 - +0.2 84,944 - +0.2 84,944 - +1.1 84,944 - +1.0 85,009 + -0.0 85,009 + +1.2 85,010 - -0.1 85,378 + GFF5713 0.52 -0.1 85,378 + GFF5713 0.52 -2.2 85,378 + GFF5713 0.52 +0.3 85,379 - GFF5713 0.52 +1.8 85,379 - GFF5713 0.52 -0.2 85,379 - GFF5713 0.52 +0.2 85,379 - GFF5713 0.52 -0.6 85,588 + GFF5713 0.81 +0.9 85,588 + GFF5713 0.81 +0.3 85,588 + GFF5713 0.81 -0.4
Or see this region's nucleotide sequence