Strain Fitness in Variovorax sp. SCN45 around GFF5550

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5549 and GFF5550 are separated by 140 nucleotidesGFF5550 and GFF5551 are separated by 74 nucleotidesGFF5551 and GFF5552 are separated by 2 nucleotides GFF5549 - Hydrogen peroxide-inducible genes activator => OxyR, at 178,229 to 179,194 GFF5549 GFF5550 - DNA protection during starvation protein, at 179,335 to 179,910 GFF5550 GFF5551 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 179,985 to 180,845 GFF5551 GFF5552 - MaoC domain protein dehydratase, at 180,848 to 181,333 GFF5552 Position (kb) 179 180Strain fitness (log2 ratio) -2 -1 0 1 2at 178.523 kb on + strand, within GFF5549at 178.523 kb on + strand, within GFF5549at 178.523 kb on + strand, within GFF5549at 178.523 kb on + strand, within GFF5549at 178.523 kb on + strand, within GFF5549at 178.523 kb on + strand, within GFF5549at 178.523 kb on + strand, within GFF5549at 178.523 kb on + strand, within GFF5549at 178.523 kb on + strand, within GFF5549at 178.523 kb on + strand, within GFF5549at 178.523 kb on + strand, within GFF5549at 178.523 kb on + strand, within GFF5549at 178.523 kb on + strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.524 kb on - strand, within GFF5549at 178.538 kb on + strand, within GFF5549at 178.538 kb on + strand, within GFF5549at 178.538 kb on + strand, within GFF5549at 178.539 kb on - strand, within GFF5549at 178.539 kb on - strand, within GFF5549at 178.539 kb on - strand, within GFF5549at 178.709 kb on + strand, within GFF5549at 178.709 kb on + strand, within GFF5549at 178.710 kb on - strand, within GFF5549at 179.042 kb on + strand, within GFF5549at 179.042 kb on + strand, within GFF5549at 179.043 kb on - strand, within GFF5549at 179.043 kb on - strand, within GFF5549at 179.043 kb on - strand, within GFF5549at 179.123 kb on + strandat 179.123 kb on + strandat 179.124 kb on - strandat 179.156 kb on + strandat 179.156 kb on + strandat 179.156 kb on + strandat 179.156 kb on + strandat 179.156 kb on + strandat 179.156 kb on + strandat 179.156 kb on + strandat 179.156 kb on + strandat 179.156 kb on + strandat 179.156 kb on + strandat 179.156 kb on + strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.157 kb on - strandat 179.220 kb on - strandat 179.255 kb on + strandat 179.255 kb on + strandat 179.255 kb on + strandat 179.255 kb on + strandat 179.255 kb on + strandat 179.255 kb on + strandat 179.255 kb on + strandat 179.255 kb on + strandat 179.255 kb on + strandat 179.256 kb on - strandat 179.256 kb on - strandat 179.256 kb on - strandat 179.256 kb on - strandat 179.256 kb on - strandat 179.256 kb on - strandat 179.256 kb on - strandat 179.256 kb on - strandat 179.256 kb on - strandat 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.515 kb on + strand, within GFF5550at 179.516 kb on - strand, within GFF5550at 179.516 kb on - strand, within GFF5550at 179.516 kb on - strand, within GFF5550at 179.516 kb on - strand, within GFF5550at 179.516 kb on - strand, within GFF5550at 179.516 kb on - strand, within GFF5550at 179.516 kb on - strand, within GFF5550at 179.516 kb on - strand, within GFF5550at 179.516 kb on - strand, within GFF5550at 179.516 kb on - strand, within GFF5550at 179.516 kb on - strand, within GFF5550at 179.516 kb on - strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.524 kb on + strand, within GFF5550at 179.525 kb on - strand, within GFF5550at 179.525 kb on - strand, within GFF5550at 179.525 kb on - strand, within GFF5550at 179.525 kb on - strand, within GFF5550at 179.525 kb on - strand, within GFF5550at 179.525 kb on - strand, within GFF5550at 179.525 kb on - strand, within GFF5550at 179.525 kb on - strand, within GFF5550at 179.525 kb on - strand, within GFF5550at 179.525 kb on - strand, within GFF5550at 179.525 kb on - strand, within GFF5550at 179.525 kb on - strand, within GFF5550at 179.602 kb on + strand, within GFF5550at 179.602 kb on + strand, within GFF5550at 179.602 kb on + strand, within GFF5550at 179.602 kb on + strand, within GFF5550at 179.602 kb on + strand, within GFF5550at 179.602 kb on + strand, within GFF5550at 179.602 kb on + strand, within GFF5550at 179.603 kb on - strand, within GFF5550at 179.603 kb on - strand, within GFF5550at 179.603 kb on - strand, within GFF5550at 179.663 kb on - strand, within GFF5550at 179.663 kb on - strand, within GFF5550at 179.663 kb on - strand, within GFF5550at 179.663 kb on - strand, within GFF5550at 179.677 kb on + strand, within GFF5550at 179.677 kb on + strand, within GFF5550at 179.678 kb on - strand, within GFF5550at 179.678 kb on - strand, within GFF5550at 179.678 kb on - strand, within GFF5550at 179.678 kb on - strand, within GFF5550at 179.678 kb on - strand, within GFF5550at 179.678 kb on - strand, within GFF5550at 180.831 kb on + strandat 180.832 kb on - strandat 180.832 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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178,523 + GFF5549 0.30 +1.3
178,523 + GFF5549 0.30 -0.4
178,523 + GFF5549 0.30 +0.0
178,523 + GFF5549 0.30 -0.3
178,523 + GFF5549 0.30 +0.4
178,523 + GFF5549 0.30 -0.1
178,523 + GFF5549 0.30 +0.5
178,523 + GFF5549 0.30 -0.2
178,523 + GFF5549 0.30 -1.2
178,523 + GFF5549 0.30 -0.7
178,523 + GFF5549 0.30 -0.5
178,523 + GFF5549 0.30 -0.5
178,523 + GFF5549 0.30 +0.3
178,524 - GFF5549 0.31 +0.6
178,524 - GFF5549 0.31 +0.4
178,524 - GFF5549 0.31 -0.1
178,524 - GFF5549 0.31 -0.3
178,524 - GFF5549 0.31 +0.1
178,524 - GFF5549 0.31 -0.0
178,524 - GFF5549 0.31 -0.1
178,524 - GFF5549 0.31 -0.3
178,524 - GFF5549 0.31 +1.4
178,524 - GFF5549 0.31 +0.0
178,524 - GFF5549 0.31 +1.3
178,524 - GFF5549 0.31 +0.2
178,524 - GFF5549 0.31 -0.1
178,524 - GFF5549 0.31 +0.3
178,524 - GFF5549 0.31 -0.4
178,538 + GFF5549 0.32 +0.3
178,538 + GFF5549 0.32 -0.4
178,538 + GFF5549 0.32 -1.0
178,539 - GFF5549 0.32 -1.2
178,539 - GFF5549 0.32 -0.4
178,539 - GFF5549 0.32 +0.1
178,709 + GFF5549 0.50 +0.1
178,709 + GFF5549 0.50 -0.3
178,710 - GFF5549 0.50 -0.3
179,042 + GFF5549 0.84 -0.7
179,042 + GFF5549 0.84 -1.2
179,043 - GFF5549 0.84 -0.8
179,043 - GFF5549 0.84 -0.0
179,043 - GFF5549 0.84 -0.7
179,123 + +0.0
179,123 + -0.2
179,124 - -0.1
179,156 + +0.1
179,156 + -1.9
179,156 + +0.2
179,156 + +0.0
179,156 + +0.3
179,156 + -0.2
179,156 + -1.2
179,156 + -0.1
179,156 + -0.2
179,156 + -1.2
179,156 + -1.2
179,157 - -1.6
179,157 - +0.7
179,157 - -0.9
179,157 - -0.5
179,157 - -0.9
179,157 - +0.7
179,157 - -0.3
179,157 - +1.2
179,157 - -0.7
179,157 - +0.1
179,157 - +0.5
179,157 - -1.0
179,157 - -0.4
179,157 - +0.8
179,157 - +1.8
179,157 - +0.5
179,157 - -0.7
179,157 - -0.8
179,157 - +0.6
179,157 - +0.4
179,220 - +0.3
179,255 + -0.3
179,255 + +0.0
179,255 + +1.8
179,255 + -0.6
179,255 + +0.9
179,255 + -0.9
179,255 + -0.4
179,255 + +0.1
179,255 + -0.4
179,256 - -0.6
179,256 - -0.2
179,256 - -0.3
179,256 - -0.1
179,256 - -0.9
179,256 - -0.5
179,256 - +1.3
179,256 - +1.0
179,256 - -1.0
179,515 + GFF5550 0.31 +0.4
179,515 + GFF5550 0.31 -1.9
179,515 + GFF5550 0.31 -0.1
179,515 + GFF5550 0.31 -0.8
179,515 + GFF5550 0.31 -0.6
179,515 + GFF5550 0.31 +1.4
179,515 + GFF5550 0.31 -0.3
179,515 + GFF5550 0.31 -0.3
179,515 + GFF5550 0.31 -0.6
179,515 + GFF5550 0.31 -0.9
179,515 + GFF5550 0.31 -0.6
179,515 + GFF5550 0.31 -0.5
179,515 + GFF5550 0.31 -0.6
179,515 + GFF5550 0.31 -0.4
179,515 + GFF5550 0.31 +0.3
179,515 + GFF5550 0.31 -0.3
179,515 + GFF5550 0.31 -1.0
179,515 + GFF5550 0.31 +0.5
179,515 + GFF5550 0.31 -1.3
179,516 - GFF5550 0.31 -0.2
179,516 - GFF5550 0.31 +0.5
179,516 - GFF5550 0.31 +0.5
179,516 - GFF5550 0.31 -0.3
179,516 - GFF5550 0.31 -0.8
179,516 - GFF5550 0.31 +2.4
179,516 - GFF5550 0.31 +0.0
179,516 - GFF5550 0.31 -0.3
179,516 - GFF5550 0.31 +0.6
179,516 - GFF5550 0.31 -1.0
179,516 - GFF5550 0.31 -0.7
179,516 - GFF5550 0.31 -0.5
179,524 + GFF5550 0.33 -0.6
179,524 + GFF5550 0.33 -0.2
179,524 + GFF5550 0.33 -1.0
179,524 + GFF5550 0.33 -1.3
179,524 + GFF5550 0.33 +0.3
179,524 + GFF5550 0.33 +0.0
179,524 + GFF5550 0.33 -0.1
179,524 + GFF5550 0.33 +0.3
179,524 + GFF5550 0.33 -0.2
179,524 + GFF5550 0.33 +0.5
179,524 + GFF5550 0.33 +1.4
179,524 + GFF5550 0.33 -0.0
179,524 + GFF5550 0.33 -1.2
179,524 + GFF5550 0.33 -0.1
179,525 - GFF5550 0.33 -2.2
179,525 - GFF5550 0.33 +0.8
179,525 - GFF5550 0.33 -0.6
179,525 - GFF5550 0.33 -0.3
179,525 - GFF5550 0.33 -0.9
179,525 - GFF5550 0.33 -0.2
179,525 - GFF5550 0.33 +0.1
179,525 - GFF5550 0.33 +0.2
179,525 - GFF5550 0.33 +0.2
179,525 - GFF5550 0.33 -0.3
179,525 - GFF5550 0.33 -0.8
179,525 - GFF5550 0.33 +0.2
179,602 + GFF5550 0.46 -0.8
179,602 + GFF5550 0.46 -1.0
179,602 + GFF5550 0.46 +0.5
179,602 + GFF5550 0.46 +1.1
179,602 + GFF5550 0.46 +0.2
179,602 + GFF5550 0.46 -1.2
179,602 + GFF5550 0.46 +0.4
179,603 - GFF5550 0.47 -0.9
179,603 - GFF5550 0.47 +1.1
179,603 - GFF5550 0.47 +0.1
179,663 - GFF5550 0.57 -0.5
179,663 - GFF5550 0.57 -1.0
179,663 - GFF5550 0.57 -0.4
179,663 - GFF5550 0.57 -0.0
179,677 + GFF5550 0.59 +1.1
179,677 + GFF5550 0.59 +0.3
179,678 - GFF5550 0.60 -0.5
179,678 - GFF5550 0.60 -0.9
179,678 - GFF5550 0.60 -0.2
179,678 - GFF5550 0.60 -0.2
179,678 - GFF5550 0.60 -1.6
179,678 - GFF5550 0.60 -0.3
180,831 + -0.6
180,832 - -0.2
180,832 - -1.1

Or see this region's nucleotide sequence