Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5453 and GFF5454 are separated by 15 nucleotides GFF5454 and GFF5455 are separated by 105 nucleotides
GFF5453 - Alkaline phosphatase (EC 3.1.3.1), at 81,618 to 83,612
GFF5453
GFF5454 - Transcriptional regulator, AsnC family, at 83,628 to 84,101
GFF5454
GFF5455 - Pyruvate dehydrogenase E1 component (EC 1.2.4.1), at 84,207 to 86,867
GFF5455
Position (kb) 83
84
85 Strain fitness (log2 ratio) -2
-1
0
1
2 at 82.746 kb on + strand, within GFF5453 at 82.746 kb on + strand, within GFF5453 at 82.746 kb on + strand, within GFF5453 at 82.746 kb on + strand, within GFF5453 at 82.746 kb on + strand, within GFF5453 at 82.746 kb on + strand, within GFF5453 at 82.746 kb on + strand, within GFF5453 at 82.746 kb on + strand, within GFF5453 at 82.746 kb on + strand, within GFF5453 at 82.746 kb on + strand, within GFF5453 at 82.746 kb on + strand, within GFF5453 at 82.746 kb on + strand, within GFF5453 at 82.747 kb on - strand, within GFF5453 at 82.747 kb on - strand, within GFF5453 at 82.747 kb on - strand, within GFF5453 at 82.747 kb on - strand, within GFF5453 at 82.747 kb on - strand, within GFF5453 at 82.775 kb on + strand, within GFF5453 at 82.775 kb on + strand, within GFF5453 at 82.775 kb on + strand, within GFF5453 at 82.775 kb on + strand, within GFF5453 at 82.776 kb on - strand, within GFF5453 at 82.776 kb on - strand, within GFF5453 at 82.812 kb on + strand, within GFF5453 at 82.812 kb on + strand, within GFF5453 at 82.812 kb on + strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.813 kb on - strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.824 kb on + strand, within GFF5453 at 82.825 kb on - strand, within GFF5453 at 82.825 kb on - strand, within GFF5453 at 82.825 kb on - strand, within GFF5453 at 82.825 kb on - strand, within GFF5453 at 82.825 kb on - strand, within GFF5453 at 82.825 kb on - strand, within GFF5453 at 82.825 kb on - strand, within GFF5453 at 82.825 kb on - strand, within GFF5453 at 82.825 kb on - strand, within GFF5453 at 82.825 kb on - strand, within GFF5453 at 82.825 kb on - strand, within GFF5453 at 82.825 kb on - strand, within GFF5453 at 82.902 kb on + strand, within GFF5453 at 82.903 kb on - strand, within GFF5453 at 82.980 kb on + strand, within GFF5453 at 82.980 kb on + strand, within GFF5453 at 82.980 kb on + strand, within GFF5453 at 82.981 kb on - strand, within GFF5453 at 83.315 kb on - strand, within GFF5453 at 83.325 kb on + strand, within GFF5453 at 83.325 kb on + strand, within GFF5453 at 83.325 kb on + strand, within GFF5453 at 83.325 kb on + strand, within GFF5453 at 83.326 kb on - strand, within GFF5453 at 83.326 kb on - strand, within GFF5453 at 83.326 kb on - strand, within GFF5453 at 83.326 kb on - strand, within GFF5453 at 83.326 kb on - strand, within GFF5453 at 83.326 kb on - strand, within GFF5453 at 83.424 kb on + strand at 83.424 kb on + strand at 83.424 kb on + strand at 83.424 kb on + strand at 83.424 kb on + strand at 83.424 kb on + strand at 83.424 kb on + strand at 83.424 kb on + strand at 83.424 kb on + strand at 83.424 kb on + strand at 83.424 kb on + strand at 83.424 kb on + strand at 83.424 kb on + strand at 83.424 kb on + strand at 83.424 kb on + strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.425 kb on - strand at 83.508 kb on + strand at 83.508 kb on + strand at 83.508 kb on + strand at 83.509 kb on - strand at 83.509 kb on - strand at 83.509 kb on - strand at 83.509 kb on - strand at 83.541 kb on + strand at 83.541 kb on + strand at 83.541 kb on + strand at 83.541 kb on + strand at 83.541 kb on + strand at 83.541 kb on + strand at 83.541 kb on + strand at 83.542 kb on - strand at 83.542 kb on - strand at 83.542 kb on - strand at 83.542 kb on - strand at 83.542 kb on - strand at 83.553 kb on + strand at 83.553 kb on + strand at 83.553 kb on + strand at 83.554 kb on - strand at 83.554 kb on - strand at 83.571 kb on + strand at 83.572 kb on - strand at 83.610 kb on + strand at 83.610 kb on + strand at 83.610 kb on + strand at 83.621 kb on + strand at 83.665 kb on + strand at 83.665 kb on + strand at 83.665 kb on + strand at 83.665 kb on + strand at 83.665 kb on + strand at 83.665 kb on + strand at 83.665 kb on + strand at 83.666 kb on - strand at 83.666 kb on - strand at 83.666 kb on - strand at 83.666 kb on - strand at 83.666 kb on - strand at 83.666 kb on - strand at 83.666 kb on - strand at 83.666 kb on - strand at 83.666 kb on - strand at 83.724 kb on + strand, within GFF5454 at 83.724 kb on + strand, within GFF5454 at 83.725 kb on - strand, within GFF5454 at 83.725 kb on - strand, within GFF5454 at 83.785 kb on + strand, within GFF5454 at 83.785 kb on + strand, within GFF5454 at 83.786 kb on - strand, within GFF5454 at 83.786 kb on - strand, within GFF5454 at 83.786 kb on - strand, within GFF5454 at 83.809 kb on + strand, within GFF5454 at 83.809 kb on + strand, within GFF5454 at 83.809 kb on + strand, within GFF5454 at 83.809 kb on + strand, within GFF5454 at 83.809 kb on + strand, within GFF5454 at 83.810 kb on - strand, within GFF5454 at 83.810 kb on - strand, within GFF5454 at 83.810 kb on - strand, within GFF5454 at 83.947 kb on + strand, within GFF5454 at 83.947 kb on + strand, within GFF5454 at 83.948 kb on - strand, within GFF5454 at 83.948 kb on - strand, within GFF5454 at 84.175 kb on + strand at 84.175 kb on + strand at 84.175 kb on + strand at 84.175 kb on + strand at 84.175 kb on + strand at 84.176 kb on - strand at 84.176 kb on - strand at 84.176 kb on - strand at 84.176 kb on - strand at 84.176 kb on - strand at 84.176 kb on - strand at 84.195 kb on + strand at 84.195 kb on + strand at 84.196 kb on - strand at 84.254 kb on + strand at 84.255 kb on - strand at 84.255 kb on - strand at 84.423 kb on + strand at 84.423 kb on + strand at 84.423 kb on + strand at 84.423 kb on + strand at 84.423 kb on + strand at 84.423 kb on + strand at 84.423 kb on + strand at 84.423 kb on + strand at 84.423 kb on + strand at 84.424 kb on - strand at 84.424 kb on - strand at 84.424 kb on - strand at 84.424 kb on - strand at 84.424 kb on - strand at 84.424 kb on - strand at 84.546 kb on + strand, within GFF5455 at 84.546 kb on + strand, within GFF5455 at 84.547 kb on - strand, within GFF5455 at 84.547 kb on - strand, within GFF5455 at 84.547 kb on - strand, within GFF5455 at 84.576 kb on + strand, within GFF5455 at 84.576 kb on + strand, within GFF5455 at 84.576 kb on + strand, within GFF5455 at 84.576 kb on + strand, within GFF5455 at 84.577 kb on - strand, within GFF5455 at 84.577 kb on - strand, within GFF5455 at 84.577 kb on - strand, within GFF5455 at 84.577 kb on - strand, within GFF5455 at 84.577 kb on - strand, within GFF5455 at 84.577 kb on - strand, within GFF5455 at 84.690 kb on + strand, within GFF5455 at 84.690 kb on + strand, within GFF5455 at 84.690 kb on + strand, within GFF5455 at 84.690 kb on + strand, within GFF5455 at 84.690 kb on + strand, within GFF5455 at 84.690 kb on + strand, within GFF5455 at 84.690 kb on + strand, within GFF5455 at 84.691 kb on - strand, within GFF5455 at 84.691 kb on - strand, within GFF5455 at 84.691 kb on - strand, within GFF5455 at 84.691 kb on - strand, within GFF5455 at 84.702 kb on + strand, within GFF5455 at 84.742 kb on - strand, within GFF5455 at 84.804 kb on + strand, within GFF5455 at 84.816 kb on + strand, within GFF5455 at 84.817 kb on - strand, within GFF5455 at 84.817 kb on - strand, within GFF5455 at 84.817 kb on - strand, within GFF5455 at 84.817 kb on - strand, within GFF5455 at 84.817 kb on - strand, within GFF5455 at 84.882 kb on + strand, within GFF5455 at 84.882 kb on + strand, within GFF5455 at 84.883 kb on - strand, within GFF5455 at 84.883 kb on - strand, within GFF5455 at 84.883 kb on - strand, within GFF5455 at 84.883 kb on - strand, within GFF5455 at 84.883 kb on - strand, within GFF5455 at 84.904 kb on - strand, within GFF5455 at 84.904 kb on - strand, within GFF5455 at 84.904 kb on - strand, within GFF5455 at 84.904 kb on - strand, within GFF5455 at 84.904 kb on - strand, within GFF5455
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 82,746 + GFF5453 0.57 +0.1 82,746 + GFF5453 0.57 +1.1 82,746 + GFF5453 0.57 -0.2 82,746 + GFF5453 0.57 +0.3 82,746 + GFF5453 0.57 +0.0 82,746 + GFF5453 0.57 -0.5 82,746 + GFF5453 0.57 +0.7 82,746 + GFF5453 0.57 +0.1 82,746 + GFF5453 0.57 -0.7 82,746 + GFF5453 0.57 +0.1 82,746 + GFF5453 0.57 +0.6 82,746 + GFF5453 0.57 -1.2 82,747 - GFF5453 0.57 +0.2 82,747 - GFF5453 0.57 +0.1 82,747 - GFF5453 0.57 -1.2 82,747 - GFF5453 0.57 +0.4 82,747 - GFF5453 0.57 +0.3 82,775 + GFF5453 0.58 +0.8 82,775 + GFF5453 0.58 +1.0 82,775 + GFF5453 0.58 -0.1 82,775 + GFF5453 0.58 -0.3 82,776 - GFF5453 0.58 +0.2 82,776 - GFF5453 0.58 -0.4 82,812 + GFF5453 0.60 -0.2 82,812 + GFF5453 0.60 -0.5 82,812 + GFF5453 0.60 -0.6 82,813 - GFF5453 0.60 -0.2 82,813 - GFF5453 0.60 -0.0 82,813 - GFF5453 0.60 +0.3 82,813 - GFF5453 0.60 -0.0 82,813 - GFF5453 0.60 -0.7 82,813 - GFF5453 0.60 -0.3 82,813 - GFF5453 0.60 +0.8 82,813 - GFF5453 0.60 -0.0 82,813 - GFF5453 0.60 -0.2 82,813 - GFF5453 0.60 +0.6 82,813 - GFF5453 0.60 -0.5 82,813 - GFF5453 0.60 -0.2 82,813 - GFF5453 0.60 -0.9 82,813 - GFF5453 0.60 -0.2 82,813 - GFF5453 0.60 +0.0 82,824 + GFF5453 0.60 -0.5 82,824 + GFF5453 0.60 -0.5 82,824 + GFF5453 0.60 -0.7 82,824 + GFF5453 0.60 +0.0 82,824 + GFF5453 0.60 -1.8 82,824 + GFF5453 0.60 -0.5 82,824 + GFF5453 0.60 +0.1 82,824 + GFF5453 0.60 -0.6 82,824 + GFF5453 0.60 +1.5 82,824 + GFF5453 0.60 +0.1 82,824 + GFF5453 0.60 -0.4 82,824 + GFF5453 0.60 -0.5 82,824 + GFF5453 0.60 -0.5 82,824 + GFF5453 0.60 +0.9 82,825 - GFF5453 0.61 +1.8 82,825 - GFF5453 0.61 -1.2 82,825 - GFF5453 0.61 -0.2 82,825 - GFF5453 0.61 -0.9 82,825 - GFF5453 0.61 -1.0 82,825 - GFF5453 0.61 -0.6 82,825 - GFF5453 0.61 -0.7 82,825 - GFF5453 0.61 +0.0 82,825 - GFF5453 0.61 -0.0 82,825 - GFF5453 0.61 -0.9 82,825 - GFF5453 0.61 -1.2 82,825 - GFF5453 0.61 -0.2 82,902 + GFF5453 0.64 +0.1 82,903 - GFF5453 0.64 -0.2 82,980 + GFF5453 0.68 -0.2 82,980 + GFF5453 0.68 -0.8 82,980 + GFF5453 0.68 -0.4 82,981 - GFF5453 0.68 -0.5 83,315 - GFF5453 0.85 +0.0 83,325 + GFF5453 0.86 -0.0 83,325 + GFF5453 0.86 -0.6 83,325 + GFF5453 0.86 +0.5 83,325 + GFF5453 0.86 +1.0 83,326 - GFF5453 0.86 -0.1 83,326 - GFF5453 0.86 +0.7 83,326 - GFF5453 0.86 -0.4 83,326 - GFF5453 0.86 -1.6 83,326 - GFF5453 0.86 +0.1 83,326 - GFF5453 0.86 +0.3 83,424 + +0.3 83,424 + +1.0 83,424 + -0.9 83,424 + +0.1 83,424 + +0.0 83,424 + +1.4 83,424 + +0.0 83,424 + -0.2 83,424 + +0.7 83,424 + +0.3 83,424 + +1.1 83,424 + +0.6 83,424 + -0.2 83,424 + -1.6 83,424 + -0.2 83,425 - +0.6 83,425 - -0.3 83,425 - -0.4 83,425 - -1.0 83,425 - +0.0 83,425 - -0.7 83,425 - +0.0 83,425 - -0.4 83,425 - +0.0 83,425 - -0.2 83,425 - -0.9 83,425 - -0.5 83,425 - -0.3 83,425 - -0.2 83,425 - -0.2 83,508 + -0.4 83,508 + -0.3 83,508 + -0.7 83,509 - +0.9 83,509 - -0.8 83,509 - +0.1 83,509 - -1.5 83,541 + +0.2 83,541 + +0.5 83,541 + +0.6 83,541 + -0.5 83,541 + +0.3 83,541 + -0.7 83,541 + +1.5 83,542 - +0.5 83,542 - +0.5 83,542 - -0.4 83,542 - -0.4 83,542 - +1.4 83,553 + -0.2 83,553 + -0.2 83,553 + -0.6 83,554 - -0.7 83,554 - -0.0 83,571 + -0.0 83,572 - -0.4 83,610 + +0.5 83,610 + +0.1 83,610 + -1.4 83,621 + +0.6 83,665 + -1.3 83,665 + -0.1 83,665 + -1.5 83,665 + -0.1 83,665 + -0.1 83,665 + -0.7 83,665 + -0.1 83,666 - +0.3 83,666 - +0.5 83,666 - +0.7 83,666 - -0.2 83,666 - -1.6 83,666 - -0.4 83,666 - -0.4 83,666 - -0.1 83,666 - -0.2 83,724 + GFF5454 0.20 -0.3 83,724 + GFF5454 0.20 -0.7 83,725 - GFF5454 0.20 -0.7 83,725 - GFF5454 0.20 -0.2 83,785 + GFF5454 0.33 -0.4 83,785 + GFF5454 0.33 -0.5 83,786 - GFF5454 0.33 -0.0 83,786 - GFF5454 0.33 -0.5 83,786 - GFF5454 0.33 -0.0 83,809 + GFF5454 0.38 +0.6 83,809 + GFF5454 0.38 -0.3 83,809 + GFF5454 0.38 -1.2 83,809 + GFF5454 0.38 -0.6 83,809 + GFF5454 0.38 +0.3 83,810 - GFF5454 0.38 -0.9 83,810 - GFF5454 0.38 -0.8 83,810 - GFF5454 0.38 -0.3 83,947 + GFF5454 0.67 -0.3 83,947 + GFF5454 0.67 -0.5 83,948 - GFF5454 0.68 -1.0 83,948 - GFF5454 0.68 +0.1 84,175 + +0.7 84,175 + -1.0 84,175 + -1.0 84,175 + +1.3 84,175 + +0.3 84,176 - -0.3 84,176 - -0.3 84,176 - +0.0 84,176 - -0.9 84,176 - +1.3 84,176 - -0.2 84,195 + -0.2 84,195 + -0.3 84,196 - -0.5 84,254 + +0.2 84,255 - +1.1 84,255 - -0.2 84,423 + +0.7 84,423 + -1.5 84,423 + -0.5 84,423 + -0.5 84,423 + +0.1 84,423 + -0.7 84,423 + -0.7 84,423 + -1.6 84,423 + +0.3 84,424 - -0.7 84,424 - +0.1 84,424 - -0.4 84,424 - -0.9 84,424 - -0.5 84,424 - -0.2 84,546 + GFF5455 0.13 -0.2 84,546 + GFF5455 0.13 +0.5 84,547 - GFF5455 0.13 -0.7 84,547 - GFF5455 0.13 +0.0 84,547 - GFF5455 0.13 -1.1 84,576 + GFF5455 0.14 +0.4 84,576 + GFF5455 0.14 +0.1 84,576 + GFF5455 0.14 +0.0 84,576 + GFF5455 0.14 -0.8 84,577 - GFF5455 0.14 -0.2 84,577 - GFF5455 0.14 +0.8 84,577 - GFF5455 0.14 +0.2 84,577 - GFF5455 0.14 +0.1 84,577 - GFF5455 0.14 +0.8 84,577 - GFF5455 0.14 -0.6 84,690 + GFF5455 0.18 -0.9 84,690 + GFF5455 0.18 +0.3 84,690 + GFF5455 0.18 -0.2 84,690 + GFF5455 0.18 +0.5 84,690 + GFF5455 0.18 +0.3 84,690 + GFF5455 0.18 +0.3 84,690 + GFF5455 0.18 -0.0 84,691 - GFF5455 0.18 -0.3 84,691 - GFF5455 0.18 -0.8 84,691 - GFF5455 0.18 -0.3 84,691 - GFF5455 0.18 -0.8 84,702 + GFF5455 0.19 -0.7 84,742 - GFF5455 0.20 -0.2 84,804 + GFF5455 0.22 +0.0 84,816 + GFF5455 0.23 -0.5 84,817 - GFF5455 0.23 -0.7 84,817 - GFF5455 0.23 +0.3 84,817 - GFF5455 0.23 +0.6 84,817 - GFF5455 0.23 +0.7 84,817 - GFF5455 0.23 +0.5 84,882 + GFF5455 0.25 +0.4 84,882 + GFF5455 0.25 +0.3 84,883 - GFF5455 0.25 -0.3 84,883 - GFF5455 0.25 -0.8 84,883 - GFF5455 0.25 +0.0 84,883 - GFF5455 0.25 -1.6 84,883 - GFF5455 0.25 -0.3 84,904 - GFF5455 0.26 +0.1 84,904 - GFF5455 0.26 +0.4 84,904 - GFF5455 0.26 +1.0 84,904 - GFF5455 0.26 +0.3 84,904 - GFF5455 0.26 -0.1
Or see this region's nucleotide sequence