Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF544 and GFF545 are separated by 198 nucleotides GFF545 and GFF546 are separated by 290 nucleotides
GFF544 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 583,179 to 585,959
GFF544
GFF545 - hypothetical protein, at 586,158 to 587,525
GFF545
GFF546 - Aspartokinase (EC 2.7.2.4), at 587,816 to 589,084
GFF546
Position (kb) 586
587
588 Strain fitness (log2 ratio) -2
-1
0
1 at 585.246 kb on + strand, within GFF544 at 585.246 kb on + strand, within GFF544 at 585.247 kb on - strand, within GFF544 at 585.247 kb on - strand, within GFF544 at 585.294 kb on + strand, within GFF544 at 585.303 kb on + strand, within GFF544 at 585.303 kb on + strand, within GFF544 at 585.303 kb on + strand, within GFF544 at 585.303 kb on + strand, within GFF544 at 585.304 kb on - strand, within GFF544 at 585.304 kb on - strand, within GFF544 at 585.304 kb on - strand, within GFF544 at 585.339 kb on + strand, within GFF544 at 585.366 kb on + strand, within GFF544 at 585.366 kb on + strand, within GFF544 at 585.366 kb on + strand, within GFF544 at 585.366 kb on + strand, within GFF544 at 585.367 kb on - strand, within GFF544 at 585.367 kb on - strand, within GFF544 at 585.367 kb on - strand, within GFF544 at 585.367 kb on - strand, within GFF544 at 585.367 kb on - strand, within GFF544 at 585.367 kb on - strand, within GFF544 at 585.367 kb on - strand, within GFF544 at 585.367 kb on - strand, within GFF544 at 585.393 kb on + strand, within GFF544 at 585.393 kb on + strand, within GFF544 at 585.393 kb on + strand, within GFF544 at 585.393 kb on + strand, within GFF544 at 585.394 kb on - strand, within GFF544 at 585.652 kb on + strand, within GFF544 at 585.652 kb on + strand, within GFF544 at 585.652 kb on + strand, within GFF544 at 585.652 kb on + strand, within GFF544 at 585.653 kb on - strand, within GFF544 at 585.653 kb on - strand, within GFF544 at 585.653 kb on - strand, within GFF544 at 586.020 kb on + strand at 586.021 kb on - strand at 586.021 kb on - strand at 586.023 kb on - strand at 586.026 kb on + strand at 586.026 kb on + strand at 586.027 kb on - strand at 586.035 kb on + strand at 586.035 kb on + strand at 586.035 kb on + strand at 586.051 kb on + strand at 586.051 kb on + strand at 586.052 kb on - strand at 586.087 kb on + strand at 586.087 kb on + strand at 586.087 kb on + strand at 586.088 kb on - strand at 586.088 kb on - strand at 586.088 kb on - strand at 586.137 kb on + strand at 586.138 kb on - strand at 586.142 kb on + strand at 586.142 kb on + strand at 586.143 kb on - strand at 586.143 kb on - strand at 586.145 kb on + strand at 586.145 kb on + strand at 586.182 kb on + strand at 586.182 kb on + strand at 586.182 kb on + strand at 586.182 kb on + strand at 586.182 kb on + strand at 586.182 kb on + strand at 586.182 kb on + strand at 586.182 kb on + strand at 586.182 kb on + strand at 586.183 kb on - strand at 586.183 kb on - strand at 586.183 kb on - strand at 586.183 kb on - strand at 586.276 kb on + strand at 586.276 kb on + strand at 586.276 kb on + strand at 586.276 kb on + strand at 586.276 kb on + strand at 586.276 kb on + strand at 586.276 kb on + strand at 586.276 kb on + strand at 586.277 kb on - strand at 586.277 kb on - strand at 586.277 kb on - strand at 586.277 kb on - strand at 586.277 kb on - strand at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.299 kb on + strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.300 kb on - strand, within GFF545 at 586.424 kb on + strand, within GFF545 at 586.428 kb on + strand, within GFF545 at 586.818 kb on + strand, within GFF545 at 586.818 kb on + strand, within GFF545 at 586.818 kb on + strand, within GFF545 at 586.818 kb on + strand, within GFF545 at 586.819 kb on - strand, within GFF545 at 586.819 kb on - strand, within GFF545 at 586.819 kb on - strand, within GFF545 at 586.885 kb on + strand, within GFF545 at 586.885 kb on + strand, within GFF545 at 586.886 kb on - strand, within GFF545 at 586.886 kb on - strand, within GFF545 at 586.895 kb on + strand, within GFF545 at 586.896 kb on - strand, within GFF545 at 586.896 kb on - strand, within GFF545 at 586.980 kb on + strand, within GFF545 at 586.980 kb on + strand, within GFF545 at 586.980 kb on + strand, within GFF545 at 586.980 kb on + strand, within GFF545 at 586.980 kb on + strand, within GFF545 at 586.980 kb on + strand, within GFF545 at 586.981 kb on - strand, within GFF545 at 586.981 kb on - strand, within GFF545 at 586.981 kb on - strand, within GFF545 at 586.981 kb on - strand, within GFF545 at 586.981 kb on - strand, within GFF545 at 587.067 kb on + strand, within GFF545 at 587.067 kb on + strand, within GFF545 at 587.067 kb on + strand, within GFF545 at 587.068 kb on - strand, within GFF545 at 587.100 kb on + strand, within GFF545 at 587.109 kb on + strand, within GFF545 at 587.110 kb on - strand, within GFF545 at 587.115 kb on - strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.301 kb on + strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.302 kb on - strand, within GFF545 at 587.305 kb on + strand, within GFF545 at 587.305 kb on + strand, within GFF545 at 587.305 kb on + strand, within GFF545 at 587.305 kb on + strand, within GFF545 at 587.306 kb on - strand, within GFF545 at 587.306 kb on - strand, within GFF545 at 587.306 kb on - strand, within GFF545 at 587.306 kb on - strand, within GFF545 at 587.306 kb on - strand, within GFF545 at 587.466 kb on + strand at 587.466 kb on + strand at 587.466 kb on + strand at 587.466 kb on + strand at 587.466 kb on + strand at 587.466 kb on + strand at 587.466 kb on + strand at 587.466 kb on + strand at 587.466 kb on + strand at 587.466 kb on + strand at 587.466 kb on + strand at 587.466 kb on + strand at 587.466 kb on + strand at 587.466 kb on + strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.467 kb on - strand at 587.671 kb on + strand at 587.671 kb on + strand at 587.671 kb on + strand at 587.671 kb on + strand at 587.671 kb on + strand at 587.671 kb on + strand at 587.683 kb on + strand at 587.683 kb on + strand at 587.683 kb on + strand at 587.683 kb on + strand at 587.683 kb on + strand at 587.683 kb on + strand at 587.684 kb on - strand at 587.684 kb on - strand at 587.684 kb on - strand at 587.684 kb on - strand at 587.806 kb on - strand at 587.814 kb on - strand at 587.814 kb on - strand at 587.814 kb on - strand at 587.814 kb on - strand at 587.814 kb on - strand at 587.814 kb on - strand at 587.818 kb on - strand at 587.818 kb on - strand at 587.818 kb on - strand at 587.818 kb on - strand at 587.818 kb on - strand at 587.849 kb on - strand at 587.849 kb on - strand at 587.849 kb on - strand at 587.849 kb on - strand at 587.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 585,246 + GFF544 0.74 +0.5 585,246 + GFF544 0.74 -0.5 585,247 - GFF544 0.74 -1.3 585,247 - GFF544 0.74 -1.0 585,294 + GFF544 0.76 -0.5 585,303 + GFF544 0.76 -0.3 585,303 + GFF544 0.76 -0.1 585,303 + GFF544 0.76 -0.8 585,303 + GFF544 0.76 +0.1 585,304 - GFF544 0.76 -1.3 585,304 - GFF544 0.76 -0.6 585,304 - GFF544 0.76 +0.7 585,339 + GFF544 0.78 -0.2 585,366 + GFF544 0.79 -0.3 585,366 + GFF544 0.79 -0.2 585,366 + GFF544 0.79 -0.3 585,366 + GFF544 0.79 +0.3 585,367 - GFF544 0.79 -0.0 585,367 - GFF544 0.79 -0.3 585,367 - GFF544 0.79 -1.3 585,367 - GFF544 0.79 +0.1 585,367 - GFF544 0.79 +0.2 585,367 - GFF544 0.79 -0.2 585,367 - GFF544 0.79 -0.7 585,367 - GFF544 0.79 -1.0 585,393 + GFF544 0.80 -0.0 585,393 + GFF544 0.80 -0.5 585,393 + GFF544 0.80 +0.5 585,393 + GFF544 0.80 -0.6 585,394 - GFF544 0.80 -0.8 585,652 + GFF544 0.89 -0.3 585,652 + GFF544 0.89 -0.3 585,652 + GFF544 0.89 +0.8 585,652 + GFF544 0.89 -0.8 585,653 - GFF544 0.89 +0.6 585,653 - GFF544 0.89 -1.4 585,653 - GFF544 0.89 -0.5 586,020 + -1.4 586,021 - -0.2 586,021 - -0.1 586,023 - +1.4 586,026 + -0.6 586,026 + -0.5 586,027 - -0.5 586,035 + +0.5 586,035 + -0.4 586,035 + +1.5 586,051 + -0.5 586,051 + -0.3 586,052 - -1.1 586,087 + +0.7 586,087 + +0.3 586,087 + -0.8 586,088 - -1.1 586,088 - -1.0 586,088 - +0.5 586,137 + -0.2 586,138 - +0.3 586,142 + -0.5 586,142 + -0.3 586,143 - +0.5 586,143 - +0.2 586,145 + +0.5 586,145 + -0.6 586,182 + -0.5 586,182 + +1.3 586,182 + -0.0 586,182 + -0.5 586,182 + +1.0 586,182 + -0.2 586,182 + -2.3 586,182 + +1.1 586,182 + +0.1 586,183 - -1.3 586,183 - +0.3 586,183 - -0.2 586,183 - -0.3 586,276 + +0.2 586,276 + +0.2 586,276 + +1.5 586,276 + -0.5 586,276 + -1.6 586,276 + -0.2 586,276 + +0.1 586,276 + +1.0 586,277 - -0.5 586,277 - -2.5 586,277 - -0.3 586,277 - -0.2 586,277 - +1.3 586,299 + GFF545 0.10 -1.6 586,299 + GFF545 0.10 +0.5 586,299 + GFF545 0.10 +0.4 586,299 + GFF545 0.10 +0.1 586,299 + GFF545 0.10 -1.0 586,299 + GFF545 0.10 -1.7 586,299 + GFF545 0.10 +1.0 586,299 + GFF545 0.10 +1.5 586,299 + GFF545 0.10 +0.6 586,299 + GFF545 0.10 +0.5 586,299 + GFF545 0.10 -0.6 586,299 + GFF545 0.10 -0.1 586,299 + GFF545 0.10 +0.3 586,299 + GFF545 0.10 -1.2 586,299 + GFF545 0.10 +0.2 586,299 + GFF545 0.10 +0.9 586,299 + GFF545 0.10 +0.5 586,299 + GFF545 0.10 -0.8 586,299 + GFF545 0.10 +1.0 586,299 + GFF545 0.10 -0.5 586,299 + GFF545 0.10 -0.6 586,299 + GFF545 0.10 -0.5 586,299 + GFF545 0.10 -1.6 586,299 + GFF545 0.10 -0.6 586,299 + GFF545 0.10 -0.5 586,299 + GFF545 0.10 -0.9 586,300 - GFF545 0.10 -0.7 586,300 - GFF545 0.10 -0.0 586,300 - GFF545 0.10 -2.5 586,300 - GFF545 0.10 -0.7 586,300 - GFF545 0.10 -0.8 586,300 - GFF545 0.10 -0.7 586,300 - GFF545 0.10 +0.7 586,300 - GFF545 0.10 -1.5 586,300 - GFF545 0.10 -0.8 586,300 - GFF545 0.10 -0.6 586,300 - GFF545 0.10 -1.1 586,300 - GFF545 0.10 -1.2 586,300 - GFF545 0.10 +0.1 586,300 - GFF545 0.10 +1.0 586,300 - GFF545 0.10 -0.5 586,300 - GFF545 0.10 +0.1 586,300 - GFF545 0.10 -1.5 586,300 - GFF545 0.10 -0.5 586,300 - GFF545 0.10 -0.6 586,300 - GFF545 0.10 -0.2 586,300 - GFF545 0.10 +0.0 586,300 - GFF545 0.10 -1.6 586,300 - GFF545 0.10 -0.7 586,424 + GFF545 0.19 +0.8 586,428 + GFF545 0.20 +0.5 586,818 + GFF545 0.48 -0.2 586,818 + GFF545 0.48 -0.9 586,818 + GFF545 0.48 -0.5 586,818 + GFF545 0.48 -0.0 586,819 - GFF545 0.48 -1.6 586,819 - GFF545 0.48 -1.0 586,819 - GFF545 0.48 +0.1 586,885 + GFF545 0.53 +1.5 586,885 + GFF545 0.53 +0.1 586,886 - GFF545 0.53 -0.6 586,886 - GFF545 0.53 +1.1 586,895 + GFF545 0.54 +1.1 586,896 - GFF545 0.54 -0.2 586,896 - GFF545 0.54 +0.2 586,980 + GFF545 0.60 -0.5 586,980 + GFF545 0.60 -0.5 586,980 + GFF545 0.60 +0.7 586,980 + GFF545 0.60 -0.6 586,980 + GFF545 0.60 -0.3 586,980 + GFF545 0.60 +1.3 586,981 - GFF545 0.60 +0.6 586,981 - GFF545 0.60 +0.4 586,981 - GFF545 0.60 -0.3 586,981 - GFF545 0.60 +0.7 586,981 - GFF545 0.60 -0.7 587,067 + GFF545 0.66 -0.0 587,067 + GFF545 0.66 -0.5 587,067 + GFF545 0.66 -0.5 587,068 - GFF545 0.67 -0.2 587,100 + GFF545 0.69 +1.1 587,109 + GFF545 0.70 -0.2 587,110 - GFF545 0.70 +0.9 587,115 - GFF545 0.70 -0.3 587,301 + GFF545 0.84 -0.8 587,301 + GFF545 0.84 -0.6 587,301 + GFF545 0.84 -0.5 587,301 + GFF545 0.84 -1.0 587,301 + GFF545 0.84 +0.2 587,301 + GFF545 0.84 -0.0 587,301 + GFF545 0.84 -1.3 587,301 + GFF545 0.84 -0.0 587,301 + GFF545 0.84 +0.1 587,301 + GFF545 0.84 -0.4 587,301 + GFF545 0.84 -1.0 587,301 + GFF545 0.84 +0.0 587,301 + GFF545 0.84 -0.0 587,301 + GFF545 0.84 -0.6 587,301 + GFF545 0.84 +0.4 587,301 + GFF545 0.84 -1.4 587,301 + GFF545 0.84 -0.8 587,301 + GFF545 0.84 +0.4 587,301 + GFF545 0.84 -0.0 587,301 + GFF545 0.84 -0.2 587,301 + GFF545 0.84 -0.7 587,301 + GFF545 0.84 -0.2 587,301 + GFF545 0.84 -0.6 587,302 - GFF545 0.84 -0.7 587,302 - GFF545 0.84 +0.3 587,302 - GFF545 0.84 -0.4 587,302 - GFF545 0.84 +0.2 587,302 - GFF545 0.84 -0.6 587,302 - GFF545 0.84 +0.2 587,302 - GFF545 0.84 -0.4 587,302 - GFF545 0.84 +0.7 587,302 - GFF545 0.84 -0.3 587,302 - GFF545 0.84 -0.8 587,302 - GFF545 0.84 -1.3 587,302 - GFF545 0.84 -0.6 587,302 - GFF545 0.84 +0.2 587,302 - GFF545 0.84 -1.0 587,302 - GFF545 0.84 +0.5 587,302 - GFF545 0.84 -0.5 587,302 - GFF545 0.84 +0.0 587,302 - GFF545 0.84 -1.0 587,302 - GFF545 0.84 +0.0 587,302 - GFF545 0.84 -0.5 587,302 - GFF545 0.84 -0.1 587,302 - GFF545 0.84 +0.3 587,302 - GFF545 0.84 -0.0 587,302 - GFF545 0.84 -0.6 587,302 - GFF545 0.84 -1.3 587,302 - GFF545 0.84 -0.1 587,302 - GFF545 0.84 -0.2 587,302 - GFF545 0.84 +0.2 587,302 - GFF545 0.84 -0.7 587,302 - GFF545 0.84 -0.8 587,302 - GFF545 0.84 +0.2 587,305 + GFF545 0.84 +1.0 587,305 + GFF545 0.84 -0.0 587,305 + GFF545 0.84 -0.1 587,305 + GFF545 0.84 +0.9 587,306 - GFF545 0.84 +1.5 587,306 - GFF545 0.84 -0.2 587,306 - GFF545 0.84 -0.5 587,306 - GFF545 0.84 +0.8 587,306 - GFF545 0.84 -0.8 587,466 + +0.4 587,466 + -0.3 587,466 + -0.8 587,466 + +0.4 587,466 + -1.2 587,466 + -0.0 587,466 + +1.5 587,466 + -0.6 587,466 + +0.4 587,466 + +0.5 587,466 + -0.6 587,466 + -0.5 587,466 + -0.3 587,466 + -0.3 587,467 - -0.2 587,467 - -0.7 587,467 - -0.6 587,467 - -1.2 587,467 - -0.1 587,467 - -0.0 587,467 - +0.2 587,467 - +0.0 587,467 - -0.2 587,467 - +0.5 587,467 - -0.4 587,467 - -0.6 587,467 - -0.8 587,467 - -0.8 587,467 - -0.5 587,467 - -0.7 587,467 - +0.3 587,467 - +0.1 587,467 - -0.6 587,467 - +0.1 587,467 - -0.0 587,467 - -0.9 587,467 - +0.3 587,467 - -0.2 587,467 - -0.9 587,467 - -0.5 587,467 - -1.6 587,467 - -0.6 587,671 + -0.7 587,671 + -1.0 587,671 + +0.0 587,671 + +0.1 587,671 + -0.4 587,671 + -0.6 587,683 + +0.0 587,683 + -0.5 587,683 + -0.3 587,683 + -0.0 587,683 + -0.6 587,683 + -0.0 587,684 - +0.5 587,684 - +0.2 587,684 - +0.3 587,684 - -0.8 587,806 - -0.3 587,814 - -0.3 587,814 - +0.4 587,814 - -0.5 587,814 - +1.0 587,814 - -1.3 587,814 - -1.4 587,818 - -0.3 587,818 - -0.5 587,818 - -0.7 587,818 - -0.7 587,818 - -0.2 587,849 - -1.8 587,849 - -1.7 587,849 - -2.2 587,849 - +0.5 587,849 - -1.0
Or see this region's nucleotide sequence