Strain Fitness in Variovorax sp. SCN45 around GFF544

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF543 and GFF544 overlap by 13 nucleotidesGFF544 and GFF545 are separated by 198 nucleotides GFF543 - Uncharacterized deacetylase PA5390, at 582,037 to 583,191 GFF543 GFF544 - Isoleucyl-tRNA synthetase (EC 6.1.1.5), at 583,179 to 585,959 GFF544 GFF545 - hypothetical protein, at 586,158 to 587,525 GFF545 Position (kb) 583 584 585 586Strain fitness (log2 ratio) -2 -1 0 1 2at 582.427 kb on + strand, within GFF543at 582.428 kb on - strand, within GFF543at 582.643 kb on + strand, within GFF543at 582.644 kb on - strand, within GFF543at 582.644 kb on - strand, within GFF543at 582.644 kb on - strand, within GFF543at 582.806 kb on - strand, within GFF543at 583.004 kb on + strand, within GFF543at 583.004 kb on + strand, within GFF543at 583.004 kb on + strand, within GFF543at 583.005 kb on - strand, within GFF543at 583.005 kb on - strand, within GFF543at 583.005 kb on - strand, within GFF543at 583.005 kb on - strand, within GFF543at 583.005 kb on - strand, within GFF543at 583.005 kb on - strand, within GFF543at 583.005 kb on - strand, within GFF543at 583.005 kb on - strand, within GFF543at 583.207 kb on + strandat 583.207 kb on + strandat 583.207 kb on + strandat 583.207 kb on + strandat 583.207 kb on + strandat 583.207 kb on + strandat 583.207 kb on + strandat 583.208 kb on - strandat 583.208 kb on - strandat 583.208 kb on - strandat 583.212 kb on + strandat 583.290 kb on + strandat 583.291 kb on - strandat 583.404 kb on + strandat 583.555 kb on - strand, within GFF544at 583.773 kb on + strand, within GFF544at 583.774 kb on - strand, within GFF544at 583.800 kb on + strand, within GFF544at 583.800 kb on + strand, within GFF544at 583.800 kb on + strand, within GFF544at 583.800 kb on + strand, within GFF544at 583.800 kb on + strand, within GFF544at 583.800 kb on + strand, within GFF544at 583.800 kb on + strand, within GFF544at 583.800 kb on + strand, within GFF544at 583.801 kb on - strand, within GFF544at 583.801 kb on - strand, within GFF544at 583.801 kb on - strand, within GFF544at 583.801 kb on - strand, within GFF544at 583.801 kb on - strand, within GFF544at 583.801 kb on - strand, within GFF544at 583.801 kb on - strand, within GFF544at 583.801 kb on - strand, within GFF544at 583.801 kb on - strand, within GFF544at 583.801 kb on - strand, within GFF544at 583.801 kb on - strand, within GFF544at 583.801 kb on - strand, within GFF544at 583.954 kb on - strand, within GFF544at 583.954 kb on - strand, within GFF544at 583.954 kb on - strand, within GFF544at 583.954 kb on - strand, within GFF544at 583.954 kb on - strand, within GFF544at 583.962 kb on + strand, within GFF544at 583.962 kb on + strand, within GFF544at 583.962 kb on + strand, within GFF544at 583.962 kb on + strand, within GFF544at 583.962 kb on + strand, within GFF544at 583.962 kb on + strand, within GFF544at 583.962 kb on + strand, within GFF544at 583.963 kb on - strand, within GFF544at 583.963 kb on - strand, within GFF544at 583.963 kb on - strand, within GFF544at 584.374 kb on - strand, within GFF544at 584.514 kb on + strand, within GFF544at 584.514 kb on + strand, within GFF544at 584.515 kb on - strand, within GFF544at 584.515 kb on - strand, within GFF544at 584.752 kb on - strand, within GFF544at 584.862 kb on + strand, within GFF544at 584.862 kb on + strand, within GFF544at 584.862 kb on + strand, within GFF544at 584.863 kb on - strand, within GFF544at 584.863 kb on - strand, within GFF544at 584.863 kb on - strand, within GFF544at 584.863 kb on - strand, within GFF544at 584.863 kb on - strand, within GFF544at 584.863 kb on - strand, within GFF544at 585.088 kb on - strand, within GFF544at 585.088 kb on - strand, within GFF544at 585.141 kb on + strand, within GFF544at 585.141 kb on + strand, within GFF544at 585.141 kb on + strand, within GFF544at 585.142 kb on - strand, within GFF544at 585.142 kb on - strand, within GFF544at 585.142 kb on - strand, within GFF544at 585.142 kb on - strand, within GFF544at 585.142 kb on - strand, within GFF544at 585.142 kb on - strand, within GFF544at 585.142 kb on - strand, within GFF544at 585.142 kb on - strand, within GFF544at 585.246 kb on + strand, within GFF544at 585.246 kb on + strand, within GFF544at 585.247 kb on - strand, within GFF544at 585.247 kb on - strand, within GFF544at 585.294 kb on + strand, within GFF544at 585.303 kb on + strand, within GFF544at 585.303 kb on + strand, within GFF544at 585.303 kb on + strand, within GFF544at 585.303 kb on + strand, within GFF544at 585.304 kb on - strand, within GFF544at 585.304 kb on - strand, within GFF544at 585.304 kb on - strand, within GFF544at 585.339 kb on + strand, within GFF544at 585.366 kb on + strand, within GFF544at 585.366 kb on + strand, within GFF544at 585.366 kb on + strand, within GFF544at 585.366 kb on + strand, within GFF544at 585.367 kb on - strand, within GFF544at 585.367 kb on - strand, within GFF544at 585.367 kb on - strand, within GFF544at 585.367 kb on - strand, within GFF544at 585.367 kb on - strand, within GFF544at 585.367 kb on - strand, within GFF544at 585.367 kb on - strand, within GFF544at 585.367 kb on - strand, within GFF544at 585.393 kb on + strand, within GFF544at 585.393 kb on + strand, within GFF544at 585.393 kb on + strand, within GFF544at 585.393 kb on + strand, within GFF544at 585.394 kb on - strand, within GFF544at 585.652 kb on + strand, within GFF544at 585.652 kb on + strand, within GFF544at 585.652 kb on + strand, within GFF544at 585.652 kb on + strand, within GFF544at 585.653 kb on - strand, within GFF544at 585.653 kb on - strand, within GFF544at 585.653 kb on - strand, within GFF544at 586.020 kb on + strandat 586.021 kb on - strandat 586.021 kb on - strandat 586.023 kb on - strandat 586.026 kb on + strandat 586.026 kb on + strandat 586.027 kb on - strandat 586.035 kb on + strandat 586.035 kb on + strandat 586.035 kb on + strandat 586.051 kb on + strandat 586.051 kb on + strandat 586.052 kb on - strandat 586.087 kb on + strandat 586.087 kb on + strandat 586.087 kb on + strandat 586.088 kb on - strandat 586.088 kb on - strandat 586.088 kb on - strandat 586.137 kb on + strandat 586.138 kb on - strandat 586.142 kb on + strandat 586.142 kb on + strandat 586.143 kb on - strandat 586.143 kb on - strandat 586.145 kb on + strandat 586.145 kb on + strandat 586.182 kb on + strandat 586.182 kb on + strandat 586.182 kb on + strandat 586.182 kb on + strandat 586.182 kb on + strandat 586.182 kb on + strandat 586.182 kb on + strandat 586.182 kb on + strandat 586.182 kb on + strandat 586.183 kb on - strandat 586.183 kb on - strandat 586.183 kb on - strandat 586.183 kb on - strandat 586.276 kb on + strandat 586.276 kb on + strandat 586.276 kb on + strandat 586.276 kb on + strandat 586.276 kb on + strandat 586.276 kb on + strandat 586.276 kb on + strandat 586.276 kb on + strandat 586.277 kb on - strandat 586.277 kb on - strandat 586.277 kb on - strandat 586.277 kb on - strandat 586.277 kb on - strandat 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.299 kb on + strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.300 kb on - strand, within GFF545at 586.424 kb on + strand, within GFF545at 586.428 kb on + strand, within GFF545at 586.818 kb on + strand, within GFF545at 586.818 kb on + strand, within GFF545at 586.818 kb on + strand, within GFF545at 586.818 kb on + strand, within GFF545at 586.819 kb on - strand, within GFF545at 586.819 kb on - strand, within GFF545at 586.819 kb on - strand, within GFF545at 586.885 kb on + strand, within GFF545at 586.885 kb on + strand, within GFF545at 586.886 kb on - strand, within GFF545at 586.886 kb on - strand, within GFF545at 586.895 kb on + strand, within GFF545at 586.896 kb on - strand, within GFF545at 586.896 kb on - strand, within GFF545

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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582,427 + GFF543 0.34 +0.3
582,428 - GFF543 0.34 +0.5
582,643 + GFF543 0.52 -0.5
582,644 - GFF543 0.53 -0.4
582,644 - GFF543 0.53 -0.1
582,644 - GFF543 0.53 -0.4
582,806 - GFF543 0.67 -0.3
583,004 + GFF543 0.84 +1.5
583,004 + GFF543 0.84 -0.5
583,004 + GFF543 0.84 +0.5
583,005 - GFF543 0.84 -1.0
583,005 - GFF543 0.84 -0.3
583,005 - GFF543 0.84 +1.0
583,005 - GFF543 0.84 -1.3
583,005 - GFF543 0.84 +0.2
583,005 - GFF543 0.84 -0.3
583,005 - GFF543 0.84 -0.0
583,005 - GFF543 0.84 -1.9
583,207 + -0.3
583,207 + -0.9
583,207 + +0.0
583,207 + +0.8
583,207 + -0.7
583,207 + -0.8
583,207 + +0.8
583,208 - -1.9
583,208 - -0.4
583,208 - -1.0
583,212 + +0.2
583,290 + +0.1
583,291 - +0.7
583,404 + +0.1
583,555 - GFF544 0.14 +0.9
583,773 + GFF544 0.21 +0.6
583,774 - GFF544 0.21 -1.4
583,800 + GFF544 0.22 -0.5
583,800 + GFF544 0.22 +0.4
583,800 + GFF544 0.22 -0.8
583,800 + GFF544 0.22 +2.0
583,800 + GFF544 0.22 -0.5
583,800 + GFF544 0.22 -0.6
583,800 + GFF544 0.22 -0.2
583,800 + GFF544 0.22 -0.3
583,801 - GFF544 0.22 -1.0
583,801 - GFF544 0.22 -1.3
583,801 - GFF544 0.22 +1.5
583,801 - GFF544 0.22 -0.3
583,801 - GFF544 0.22 -0.7
583,801 - GFF544 0.22 +0.1
583,801 - GFF544 0.22 -0.8
583,801 - GFF544 0.22 -1.3
583,801 - GFF544 0.22 -1.9
583,801 - GFF544 0.22 -0.8
583,801 - GFF544 0.22 +0.0
583,801 - GFF544 0.22 -0.3
583,954 - GFF544 0.28 -0.7
583,954 - GFF544 0.28 -0.0
583,954 - GFF544 0.28 +0.5
583,954 - GFF544 0.28 -2.6
583,954 - GFF544 0.28 -0.5
583,962 + GFF544 0.28 -0.8
583,962 + GFF544 0.28 -0.3
583,962 + GFF544 0.28 -1.6
583,962 + GFF544 0.28 -0.6
583,962 + GFF544 0.28 +0.2
583,962 + GFF544 0.28 -0.3
583,962 + GFF544 0.28 +0.4
583,963 - GFF544 0.28 +0.2
583,963 - GFF544 0.28 -0.2
583,963 - GFF544 0.28 -0.7
584,374 - GFF544 0.43 +0.4
584,514 + GFF544 0.48 -1.9
584,514 + GFF544 0.48 -1.0
584,515 - GFF544 0.48 -1.9
584,515 - GFF544 0.48 -0.5
584,752 - GFF544 0.57 +0.1
584,862 + GFF544 0.61 -0.2
584,862 + GFF544 0.61 -0.0
584,862 + GFF544 0.61 +0.3
584,863 - GFF544 0.61 -0.1
584,863 - GFF544 0.61 -2.3
584,863 - GFF544 0.61 +0.2
584,863 - GFF544 0.61 +0.4
584,863 - GFF544 0.61 -0.9
584,863 - GFF544 0.61 +0.5
585,088 - GFF544 0.69 -0.5
585,088 - GFF544 0.69 -0.3
585,141 + GFF544 0.71 -0.9
585,141 + GFF544 0.71 +0.2
585,141 + GFF544 0.71 -0.5
585,142 - GFF544 0.71 -0.6
585,142 - GFF544 0.71 -1.1
585,142 - GFF544 0.71 +0.8
585,142 - GFF544 0.71 -0.4
585,142 - GFF544 0.71 -0.5
585,142 - GFF544 0.71 +0.1
585,142 - GFF544 0.71 -0.4
585,142 - GFF544 0.71 +0.5
585,246 + GFF544 0.74 +0.5
585,246 + GFF544 0.74 -0.5
585,247 - GFF544 0.74 -1.3
585,247 - GFF544 0.74 -1.0
585,294 + GFF544 0.76 -0.5
585,303 + GFF544 0.76 -0.3
585,303 + GFF544 0.76 -0.1
585,303 + GFF544 0.76 -0.8
585,303 + GFF544 0.76 +0.1
585,304 - GFF544 0.76 -1.3
585,304 - GFF544 0.76 -0.6
585,304 - GFF544 0.76 +0.7
585,339 + GFF544 0.78 -0.2
585,366 + GFF544 0.79 -0.3
585,366 + GFF544 0.79 -0.2
585,366 + GFF544 0.79 -0.3
585,366 + GFF544 0.79 +0.3
585,367 - GFF544 0.79 -0.0
585,367 - GFF544 0.79 -0.3
585,367 - GFF544 0.79 -1.3
585,367 - GFF544 0.79 +0.1
585,367 - GFF544 0.79 +0.2
585,367 - GFF544 0.79 -0.2
585,367 - GFF544 0.79 -0.7
585,367 - GFF544 0.79 -1.0
585,393 + GFF544 0.80 -0.0
585,393 + GFF544 0.80 -0.5
585,393 + GFF544 0.80 +0.5
585,393 + GFF544 0.80 -0.6
585,394 - GFF544 0.80 -0.8
585,652 + GFF544 0.89 -0.3
585,652 + GFF544 0.89 -0.3
585,652 + GFF544 0.89 +0.8
585,652 + GFF544 0.89 -0.8
585,653 - GFF544 0.89 +0.6
585,653 - GFF544 0.89 -1.4
585,653 - GFF544 0.89 -0.5
586,020 + -1.4
586,021 - -0.2
586,021 - -0.1
586,023 - +1.4
586,026 + -0.6
586,026 + -0.5
586,027 - -0.5
586,035 + +0.5
586,035 + -0.4
586,035 + +1.5
586,051 + -0.5
586,051 + -0.3
586,052 - -1.1
586,087 + +0.7
586,087 + +0.3
586,087 + -0.8
586,088 - -1.1
586,088 - -1.0
586,088 - +0.5
586,137 + -0.2
586,138 - +0.3
586,142 + -0.5
586,142 + -0.3
586,143 - +0.5
586,143 - +0.2
586,145 + +0.5
586,145 + -0.6
586,182 + -0.5
586,182 + +1.3
586,182 + -0.0
586,182 + -0.5
586,182 + +1.0
586,182 + -0.2
586,182 + -2.3
586,182 + +1.1
586,182 + +0.1
586,183 - -1.3
586,183 - +0.3
586,183 - -0.2
586,183 - -0.3
586,276 + +0.2
586,276 + +0.2
586,276 + +1.5
586,276 + -0.5
586,276 + -1.6
586,276 + -0.2
586,276 + +0.1
586,276 + +1.0
586,277 - -0.5
586,277 - -2.5
586,277 - -0.3
586,277 - -0.2
586,277 - +1.3
586,299 + GFF545 0.10 -1.6
586,299 + GFF545 0.10 +0.5
586,299 + GFF545 0.10 +0.4
586,299 + GFF545 0.10 +0.1
586,299 + GFF545 0.10 -1.0
586,299 + GFF545 0.10 -1.7
586,299 + GFF545 0.10 +1.0
586,299 + GFF545 0.10 +1.5
586,299 + GFF545 0.10 +0.6
586,299 + GFF545 0.10 +0.5
586,299 + GFF545 0.10 -0.6
586,299 + GFF545 0.10 -0.1
586,299 + GFF545 0.10 +0.3
586,299 + GFF545 0.10 -1.2
586,299 + GFF545 0.10 +0.2
586,299 + GFF545 0.10 +0.9
586,299 + GFF545 0.10 +0.5
586,299 + GFF545 0.10 -0.8
586,299 + GFF545 0.10 +1.0
586,299 + GFF545 0.10 -0.5
586,299 + GFF545 0.10 -0.6
586,299 + GFF545 0.10 -0.5
586,299 + GFF545 0.10 -1.6
586,299 + GFF545 0.10 -0.6
586,299 + GFF545 0.10 -0.5
586,299 + GFF545 0.10 -0.9
586,300 - GFF545 0.10 -0.7
586,300 - GFF545 0.10 -0.0
586,300 - GFF545 0.10 -2.5
586,300 - GFF545 0.10 -0.7
586,300 - GFF545 0.10 -0.8
586,300 - GFF545 0.10 -0.7
586,300 - GFF545 0.10 +0.7
586,300 - GFF545 0.10 -1.5
586,300 - GFF545 0.10 -0.8
586,300 - GFF545 0.10 -0.6
586,300 - GFF545 0.10 -1.1
586,300 - GFF545 0.10 -1.2
586,300 - GFF545 0.10 +0.1
586,300 - GFF545 0.10 +1.0
586,300 - GFF545 0.10 -0.5
586,300 - GFF545 0.10 +0.1
586,300 - GFF545 0.10 -1.5
586,300 - GFF545 0.10 -0.5
586,300 - GFF545 0.10 -0.6
586,300 - GFF545 0.10 -0.2
586,300 - GFF545 0.10 +0.0
586,300 - GFF545 0.10 -1.6
586,300 - GFF545 0.10 -0.7
586,424 + GFF545 0.19 +0.8
586,428 + GFF545 0.20 +0.5
586,818 + GFF545 0.48 -0.2
586,818 + GFF545 0.48 -0.9
586,818 + GFF545 0.48 -0.5
586,818 + GFF545 0.48 -0.0
586,819 - GFF545 0.48 -1.6
586,819 - GFF545 0.48 -1.0
586,819 - GFF545 0.48 +0.1
586,885 + GFF545 0.53 +1.5
586,885 + GFF545 0.53 +0.1
586,886 - GFF545 0.53 -0.6
586,886 - GFF545 0.53 +1.1
586,895 + GFF545 0.54 +1.1
586,896 - GFF545 0.54 -0.2
586,896 - GFF545 0.54 +0.2

Or see this region's nucleotide sequence