Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5352 and GFF5353 are separated by 21 nucleotides GFF5353 and GFF5354 overlap by 4 nucleotides GFF5354 and GFF5355 are separated by 60 nucleotides GFF5355 and GFF5356 are separated by 7 nucleotides GFF5356 and GFF5357 are separated by 19 nucleotides
GFF5352 - Split AAA-ATPase protein PA0787, at 229,165 to 230,337
GFF5352
GFF5353 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 230,359 to 231,267
GFF5353
GFF5354 - C4-dicarboxylate transport protein, at 231,264 to 232,571
GFF5354
GFF5355 - no description, at 232,632 to 232,772
GFF5355
GFF5356 - Aldose 1-epimerase, at 232,780 to 233,538
GFF5356
GFF5357 - Imidazole glycerol phosphate synthase cyclase subunit, at 233,558 to 234,337
GFF5357
Position (kb) 231
232
233 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 230.360 kb on + strand at 230.360 kb on + strand at 230.360 kb on + strand at 230.361 kb on - strand at 230.361 kb on - strand at 230.361 kb on - strand at 230.465 kb on + strand, within GFF5353 at 230.465 kb on + strand, within GFF5353 at 230.465 kb on + strand, within GFF5353 at 230.465 kb on + strand, within GFF5353 at 230.465 kb on + strand, within GFF5353 at 230.466 kb on - strand, within GFF5353 at 230.466 kb on - strand, within GFF5353 at 230.466 kb on - strand, within GFF5353 at 230.549 kb on + strand, within GFF5353 at 230.549 kb on + strand, within GFF5353 at 230.550 kb on - strand, within GFF5353 at 230.550 kb on - strand, within GFF5353 at 230.550 kb on - strand, within GFF5353 at 230.550 kb on - strand, within GFF5353 at 230.550 kb on - strand, within GFF5353 at 230.570 kb on + strand, within GFF5353 at 230.570 kb on + strand, within GFF5353 at 230.570 kb on + strand, within GFF5353 at 230.570 kb on + strand, within GFF5353 at 230.570 kb on + strand, within GFF5353 at 230.570 kb on + strand, within GFF5353 at 230.571 kb on - strand, within GFF5353 at 230.571 kb on - strand, within GFF5353 at 230.571 kb on - strand, within GFF5353 at 230.571 kb on - strand, within GFF5353 at 230.634 kb on - strand, within GFF5353 at 230.634 kb on - strand, within GFF5353 at 231.065 kb on + strand, within GFF5353 at 231.066 kb on - strand, within GFF5353 at 231.601 kb on + strand, within GFF5354 at 231.601 kb on + strand, within GFF5354 at 231.601 kb on + strand, within GFF5354 at 231.601 kb on + strand, within GFF5354 at 231.601 kb on + strand, within GFF5354 at 231.601 kb on + strand, within GFF5354 at 231.602 kb on - strand, within GFF5354 at 231.602 kb on - strand, within GFF5354 at 231.602 kb on - strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.637 kb on + strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.638 kb on - strand, within GFF5354 at 231.668 kb on - strand, within GFF5354 at 231.742 kb on + strand, within GFF5354 at 231.743 kb on - strand, within GFF5354 at 231.743 kb on - strand, within GFF5354 at 231.743 kb on - strand, within GFF5354 at 231.880 kb on + strand, within GFF5354 at 231.880 kb on + strand, within GFF5354 at 231.880 kb on + strand, within GFF5354 at 231.880 kb on + strand, within GFF5354 at 231.880 kb on + strand, within GFF5354 at 231.881 kb on - strand, within GFF5354 at 231.881 kb on - strand, within GFF5354 at 231.881 kb on - strand, within GFF5354 at 231.881 kb on - strand, within GFF5354 at 231.881 kb on - strand, within GFF5354 at 231.988 kb on + strand, within GFF5354 at 231.989 kb on - strand, within GFF5354 at 232.450 kb on + strand at 232.450 kb on + strand at 232.451 kb on - strand at 232.451 kb on - strand at 232.451 kb on - strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.504 kb on + strand at 232.505 kb on - strand at 232.505 kb on - strand at 232.505 kb on - strand at 232.505 kb on - strand at 232.505 kb on - strand at 232.505 kb on - strand at 232.575 kb on + strand at 232.576 kb on - strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.592 kb on + strand at 232.593 kb on - strand at 232.593 kb on - strand at 232.593 kb on - strand at 232.593 kb on - strand at 232.593 kb on - strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.598 kb on + strand at 232.599 kb on - strand at 232.599 kb on - strand at 232.599 kb on - strand at 232.599 kb on - strand at 232.599 kb on - strand at 232.599 kb on - strand at 232.599 kb on - strand at 232.692 kb on + strand, within GFF5355 at 232.692 kb on + strand, within GFF5355 at 232.692 kb on + strand, within GFF5355 at 232.692 kb on + strand, within GFF5355 at 232.693 kb on - strand, within GFF5355 at 232.693 kb on - strand, within GFF5355 at 232.693 kb on - strand, within GFF5355 at 232.693 kb on - strand, within GFF5355 at 232.770 kb on + strand at 232.771 kb on - strand at 232.771 kb on - strand at 232.771 kb on - strand at 232.771 kb on - strand at 232.802 kb on + strand at 232.802 kb on + strand at 232.802 kb on + strand at 232.802 kb on + strand at 232.802 kb on + strand at 232.802 kb on + strand at 232.802 kb on + strand at 232.803 kb on - strand at 232.803 kb on - strand at 232.803 kb on - strand at 232.803 kb on - strand at 232.803 kb on - strand at 232.803 kb on - strand at 232.803 kb on - strand at 232.840 kb on + strand at 232.840 kb on + strand at 232.840 kb on + strand at 232.840 kb on + strand at 232.898 kb on + strand, within GFF5356 at 232.898 kb on + strand, within GFF5356 at 232.898 kb on + strand, within GFF5356 at 232.899 kb on - strand, within GFF5356 at 232.899 kb on - strand, within GFF5356 at 232.899 kb on - strand, within GFF5356 at 232.899 kb on - strand, within GFF5356 at 232.899 kb on - strand, within GFF5356 at 233.116 kb on - strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.158 kb on + strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.159 kb on - strand, within GFF5356 at 233.294 kb on - strand, within GFF5356 at 233.294 kb on - strand, within GFF5356 at 233.294 kb on - strand, within GFF5356
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 230,360 + +1.8 230,360 + -0.5 230,360 + +0.5 230,361 - -0.0 230,361 - +0.9 230,361 - +0.8 230,465 + GFF5353 0.12 -0.1 230,465 + GFF5353 0.12 +1.2 230,465 + GFF5353 0.12 +0.3 230,465 + GFF5353 0.12 +0.6 230,465 + GFF5353 0.12 -0.4 230,466 - GFF5353 0.12 +0.3 230,466 - GFF5353 0.12 +0.2 230,466 - GFF5353 0.12 +0.4 230,549 + GFF5353 0.21 +0.7 230,549 + GFF5353 0.21 -0.3 230,550 - GFF5353 0.21 -1.2 230,550 - GFF5353 0.21 +0.0 230,550 - GFF5353 0.21 +0.7 230,550 - GFF5353 0.21 -0.5 230,550 - GFF5353 0.21 -1.0 230,570 + GFF5353 0.23 +0.1 230,570 + GFF5353 0.23 -0.5 230,570 + GFF5353 0.23 -1.8 230,570 + GFF5353 0.23 -0.2 230,570 + GFF5353 0.23 +1.0 230,570 + GFF5353 0.23 +0.3 230,571 - GFF5353 0.23 -0.4 230,571 - GFF5353 0.23 +0.5 230,571 - GFF5353 0.23 +0.5 230,571 - GFF5353 0.23 +0.1 230,634 - GFF5353 0.30 +0.7 230,634 - GFF5353 0.30 -0.0 231,065 + GFF5353 0.78 -1.4 231,066 - GFF5353 0.78 +0.2 231,601 + GFF5354 0.26 +1.0 231,601 + GFF5354 0.26 +0.1 231,601 + GFF5354 0.26 +0.4 231,601 + GFF5354 0.26 +0.5 231,601 + GFF5354 0.26 +2.1 231,601 + GFF5354 0.26 -0.8 231,602 - GFF5354 0.26 -0.2 231,602 - GFF5354 0.26 -1.4 231,602 - GFF5354 0.26 +0.2 231,637 + GFF5354 0.29 +1.4 231,637 + GFF5354 0.29 +0.7 231,637 + GFF5354 0.29 -0.5 231,637 + GFF5354 0.29 -1.4 231,637 + GFF5354 0.29 +3.8 231,637 + GFF5354 0.29 +0.2 231,637 + GFF5354 0.29 -0.4 231,637 + GFF5354 0.29 +0.2 231,637 + GFF5354 0.29 +0.3 231,637 + GFF5354 0.29 +2.2 231,637 + GFF5354 0.29 +0.2 231,637 + GFF5354 0.29 +0.2 231,637 + GFF5354 0.29 -0.2 231,637 + GFF5354 0.29 +1.0 231,637 + GFF5354 0.29 +0.0 231,638 - GFF5354 0.29 +0.5 231,638 - GFF5354 0.29 -0.3 231,638 - GFF5354 0.29 -0.4 231,638 - GFF5354 0.29 -0.5 231,638 - GFF5354 0.29 +0.2 231,638 - GFF5354 0.29 -0.9 231,638 - GFF5354 0.29 -0.5 231,638 - GFF5354 0.29 -0.5 231,638 - GFF5354 0.29 -0.5 231,638 - GFF5354 0.29 -0.1 231,638 - GFF5354 0.29 +0.4 231,638 - GFF5354 0.29 -1.1 231,638 - GFF5354 0.29 +0.5 231,638 - GFF5354 0.29 -0.0 231,638 - GFF5354 0.29 -0.9 231,638 - GFF5354 0.29 +0.3 231,668 - GFF5354 0.31 +1.2 231,742 + GFF5354 0.37 +1.3 231,743 - GFF5354 0.37 -0.9 231,743 - GFF5354 0.37 -0.2 231,743 - GFF5354 0.37 -1.8 231,880 + GFF5354 0.47 -0.3 231,880 + GFF5354 0.47 -0.2 231,880 + GFF5354 0.47 +0.2 231,880 + GFF5354 0.47 -0.5 231,880 + GFF5354 0.47 -0.2 231,881 - GFF5354 0.47 -0.3 231,881 - GFF5354 0.47 -1.8 231,881 - GFF5354 0.47 +0.5 231,881 - GFF5354 0.47 -0.8 231,881 - GFF5354 0.47 -0.8 231,988 + GFF5354 0.55 +0.5 231,989 - GFF5354 0.55 -0.4 232,450 + -0.0 232,450 + -0.5 232,451 - +0.1 232,451 - +0.1 232,451 - +0.3 232,504 + +0.1 232,504 + -0.2 232,504 + +0.1 232,504 + +1.2 232,504 + +0.3 232,504 + -0.9 232,504 + +1.8 232,504 + +1.0 232,505 - -0.5 232,505 - -0.4 232,505 - -0.3 232,505 - +0.5 232,505 - -0.4 232,505 - +1.8 232,575 + +0.0 232,576 - +0.2 232,592 + -0.4 232,592 + +0.3 232,592 + -2.0 232,592 + +0.2 232,592 + -0.5 232,592 + -0.1 232,592 + +0.5 232,592 + +1.8 232,593 - +0.5 232,593 - -0.6 232,593 - +0.2 232,593 - -1.2 232,593 - -0.4 232,598 + +0.3 232,598 + -0.6 232,598 + -0.0 232,598 + -0.4 232,598 + -0.8 232,598 + +0.3 232,598 + +2.5 232,599 - +0.3 232,599 - -0.4 232,599 - -1.0 232,599 - -0.7 232,599 - +1.2 232,599 - -0.4 232,599 - -0.5 232,692 + GFF5355 0.43 -2.2 232,692 + GFF5355 0.43 -0.0 232,692 + GFF5355 0.43 +0.3 232,692 + GFF5355 0.43 +0.6 232,693 - GFF5355 0.43 -0.0 232,693 - GFF5355 0.43 -0.5 232,693 - GFF5355 0.43 +0.9 232,693 - GFF5355 0.43 -0.3 232,770 + +1.0 232,771 - -0.6 232,771 - +0.5 232,771 - +0.8 232,771 - -1.8 232,802 + +0.4 232,802 + +0.9 232,802 + -0.1 232,802 + +0.2 232,802 + -0.0 232,802 + -0.4 232,802 + -0.3 232,803 - -0.2 232,803 - -1.1 232,803 - -0.4 232,803 - -0.4 232,803 - +0.5 232,803 - +0.3 232,803 - -1.4 232,840 + -1.3 232,840 + +0.6 232,840 + +1.0 232,840 + +1.4 232,898 + GFF5356 0.16 -0.5 232,898 + GFF5356 0.16 -1.6 232,898 + GFF5356 0.16 -0.3 232,899 - GFF5356 0.16 -0.5 232,899 - GFF5356 0.16 -0.3 232,899 - GFF5356 0.16 +0.8 232,899 - GFF5356 0.16 -0.4 232,899 - GFF5356 0.16 -2.5 233,116 - GFF5356 0.44 -0.2 233,158 + GFF5356 0.50 -0.5 233,158 + GFF5356 0.50 +0.2 233,158 + GFF5356 0.50 +1.0 233,158 + GFF5356 0.50 +0.2 233,158 + GFF5356 0.50 +1.2 233,158 + GFF5356 0.50 +0.0 233,158 + GFF5356 0.50 +1.8 233,158 + GFF5356 0.50 -0.6 233,158 + GFF5356 0.50 +0.2 233,159 - GFF5356 0.50 -0.3 233,159 - GFF5356 0.50 +0.7 233,159 - GFF5356 0.50 -0.1 233,159 - GFF5356 0.50 +0.8 233,159 - GFF5356 0.50 -0.4 233,159 - GFF5356 0.50 -0.6 233,159 - GFF5356 0.50 -0.6 233,159 - GFF5356 0.50 -0.7 233,159 - GFF5356 0.50 -0.1 233,159 - GFF5356 0.50 -0.4 233,159 - GFF5356 0.50 -0.1 233,159 - GFF5356 0.50 +0.2 233,159 - GFF5356 0.50 -0.5 233,159 - GFF5356 0.50 -0.3 233,159 - GFF5356 0.50 +1.2 233,294 - GFF5356 0.68 +1.4 233,294 - GFF5356 0.68 +0.9 233,294 - GFF5356 0.68 -0.4
Or see this region's nucleotide sequence