Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5291 and GFF5292 are separated by 6 nucleotides GFF5292 and GFF5293 are separated by 23 nucleotides GFF5293 and GFF5294 are separated by 6 nucleotides
GFF5291 - Ferrichrome-iron receptor, at 162,118 to 164,268
GFF5291
GFF5292 - no description, at 164,275 to 164,778
GFF5292
GFF5293 - N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87), at 164,802 to 166,052
GFF5293
GFF5294 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 166,059 to 167,648
GFF5294
Position (kb) 164
165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2 at 163.873 kb on + strand, within GFF5291 at 163.873 kb on + strand, within GFF5291 at 163.873 kb on + strand, within GFF5291 at 163.879 kb on + strand, within GFF5291 at 163.879 kb on + strand, within GFF5291 at 163.879 kb on + strand, within GFF5291 at 163.879 kb on + strand, within GFF5291 at 163.880 kb on - strand, within GFF5291 at 163.880 kb on - strand, within GFF5291 at 163.880 kb on - strand, within GFF5291 at 163.979 kb on - strand, within GFF5291 at 163.979 kb on - strand, within GFF5291 at 164.035 kb on + strand, within GFF5291 at 164.035 kb on + strand, within GFF5291 at 164.035 kb on + strand, within GFF5291 at 164.035 kb on + strand, within GFF5291 at 164.035 kb on + strand, within GFF5291 at 164.036 kb on - strand, within GFF5291 at 164.036 kb on - strand, within GFF5291 at 164.098 kb on + strand at 164.185 kb on + strand at 164.311 kb on + strand at 164.311 kb on + strand at 164.312 kb on - strand at 164.312 kb on - strand at 164.458 kb on + strand, within GFF5292 at 164.459 kb on - strand, within GFF5292 at 164.518 kb on + strand, within GFF5292 at 164.518 kb on + strand, within GFF5292 at 164.518 kb on + strand, within GFF5292 at 164.518 kb on + strand, within GFF5292 at 164.519 kb on - strand, within GFF5292 at 164.519 kb on - strand, within GFF5292 at 164.584 kb on + strand, within GFF5292 at 164.584 kb on + strand, within GFF5292 at 164.584 kb on + strand, within GFF5292 at 164.972 kb on + strand, within GFF5293 at 164.972 kb on + strand, within GFF5293 at 165.594 kb on + strand, within GFF5293 at 165.594 kb on + strand, within GFF5293 at 165.594 kb on + strand, within GFF5293 at 165.594 kb on + strand, within GFF5293 at 165.595 kb on - strand, within GFF5293 at 165.595 kb on - strand, within GFF5293 at 166.060 kb on + strand at 166.060 kb on + strand at 166.061 kb on - strand at 166.240 kb on + strand, within GFF5294 at 166.240 kb on + strand, within GFF5294 at 166.453 kb on + strand, within GFF5294 at 166.453 kb on + strand, within GFF5294 at 166.454 kb on - strand, within GFF5294 at 166.454 kb on - strand, within GFF5294 at 166.454 kb on - strand, within GFF5294 at 166.489 kb on + strand, within GFF5294 at 166.498 kb on + strand, within GFF5294 at 166.499 kb on - strand, within GFF5294 at 166.499 kb on - strand, within GFF5294 at 166.499 kb on - strand, within GFF5294 at 166.499 kb on - strand, within GFF5294 at 166.499 kb on - strand, within GFF5294 at 166.618 kb on + strand, within GFF5294 at 166.618 kb on + strand, within GFF5294 at 166.618 kb on + strand, within GFF5294 at 166.619 kb on - strand, within GFF5294 at 166.619 kb on - strand, within GFF5294 at 166.619 kb on - strand, within GFF5294 at 166.951 kb on + strand, within GFF5294 at 166.951 kb on + strand, within GFF5294 at 166.952 kb on - strand, within GFF5294 at 166.952 kb on - strand, within GFF5294 at 166.952 kb on - strand, within GFF5294 at 166.952 kb on - strand, within GFF5294
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 163,873 + GFF5291 0.82 -0.6 163,873 + GFF5291 0.82 -0.4 163,873 + GFF5291 0.82 -1.2 163,879 + GFF5291 0.82 +0.8 163,879 + GFF5291 0.82 -1.0 163,879 + GFF5291 0.82 -0.5 163,879 + GFF5291 0.82 +0.0 163,880 - GFF5291 0.82 +1.8 163,880 - GFF5291 0.82 -0.4 163,880 - GFF5291 0.82 -0.7 163,979 - GFF5291 0.87 +0.6 163,979 - GFF5291 0.87 -0.9 164,035 + GFF5291 0.89 -0.4 164,035 + GFF5291 0.89 +0.5 164,035 + GFF5291 0.89 +1.0 164,035 + GFF5291 0.89 +0.9 164,035 + GFF5291 0.89 +0.2 164,036 - GFF5291 0.89 +0.2 164,036 - GFF5291 0.89 -0.9 164,098 + -0.1 164,185 + +0.4 164,311 + +0.3 164,311 + +0.2 164,312 - +1.1 164,312 - -0.4 164,458 + GFF5292 0.36 -0.1 164,459 - GFF5292 0.37 +0.0 164,518 + GFF5292 0.48 -0.3 164,518 + GFF5292 0.48 -0.5 164,518 + GFF5292 0.48 -1.5 164,518 + GFF5292 0.48 +0.0 164,519 - GFF5292 0.48 -0.5 164,519 - GFF5292 0.48 -0.5 164,584 + GFF5292 0.61 +0.5 164,584 + GFF5292 0.61 -0.2 164,584 + GFF5292 0.61 -0.5 164,972 + GFF5293 0.14 +0.4 164,972 + GFF5293 0.14 +1.2 165,594 + GFF5293 0.63 -2.0 165,594 + GFF5293 0.63 +1.8 165,594 + GFF5293 0.63 +0.8 165,594 + GFF5293 0.63 +0.8 165,595 - GFF5293 0.63 -0.2 165,595 - GFF5293 0.63 -0.2 166,060 + +1.2 166,060 + -0.0 166,061 - -0.2 166,240 + GFF5294 0.11 +0.4 166,240 + GFF5294 0.11 -0.4 166,453 + GFF5294 0.25 +0.3 166,453 + GFF5294 0.25 +0.9 166,454 - GFF5294 0.25 +0.8 166,454 - GFF5294 0.25 -0.9 166,454 - GFF5294 0.25 -0.5 166,489 + GFF5294 0.27 -0.3 166,498 + GFF5294 0.28 +1.5 166,499 - GFF5294 0.28 -0.0 166,499 - GFF5294 0.28 +0.7 166,499 - GFF5294 0.28 -0.1 166,499 - GFF5294 0.28 -0.5 166,499 - GFF5294 0.28 -0.1 166,618 + GFF5294 0.35 -0.8 166,618 + GFF5294 0.35 -0.5 166,618 + GFF5294 0.35 -0.6 166,619 - GFF5294 0.35 +1.0 166,619 - GFF5294 0.35 +0.4 166,619 - GFF5294 0.35 +0.2 166,951 + GFF5294 0.56 +1.3 166,951 + GFF5294 0.56 -0.8 166,952 - GFF5294 0.56 -0.8 166,952 - GFF5294 0.56 -0.5 166,952 - GFF5294 0.56 -0.4 166,952 - GFF5294 0.56 +0.2
Or see this region's nucleotide sequence