Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5220 and GFF5221 are separated by 49 nucleotides GFF5221 and GFF5222 are separated by 72 nucleotides GFF5222 and GFF5223 are separated by 15 nucleotides
GFF5220 - putative secreted oxidoreductase, at 83,999 to 85,138
GFF5220
GFF5221 - Phosphonoacetaldehyde hydrolase (EC 3.11.1.1), at 85,188 to 86,012
GFF5221
GFF5222 - hypothetical protein, at 86,085 to 86,219
GFF5222
GFF5223 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117), at 86,235 to 87,134
GFF5223
Position (kb) 85
86
87 Strain fitness (log2 ratio) -2
-1
0
1 at 84.747 kb on - strand, within GFF5220 at 84.756 kb on - strand, within GFF5220 at 85.176 kb on - strand at 85.249 kb on + strand at 85.249 kb on + strand at 85.455 kb on + strand, within GFF5221 at 85.456 kb on - strand, within GFF5221 at 85.508 kb on - strand, within GFF5221 at 85.578 kb on + strand, within GFF5221 at 85.696 kb on - strand, within GFF5221 at 85.696 kb on - strand, within GFF5221 at 85.926 kb on + strand, within GFF5221 at 86.073 kb on + strand at 86.073 kb on + strand at 86.073 kb on + strand at 86.073 kb on + strand at 86.074 kb on - strand at 86.074 kb on - strand at 86.074 kb on - strand at 86.074 kb on - strand at 86.107 kb on + strand, within GFF5222 at 86.414 kb on - strand, within GFF5223 at 86.734 kb on + strand, within GFF5223 at 86.735 kb on - strand, within GFF5223 at 86.735 kb on - strand, within GFF5223 at 86.735 kb on - strand, within GFF5223 at 86.941 kb on + strand, within GFF5223 at 86.942 kb on - strand, within GFF5223 at 86.942 kb on - strand, within GFF5223
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 84,747 - GFF5220 0.66 +0.4 84,756 - GFF5220 0.66 +0.8 85,176 - -0.5 85,249 + +0.2 85,249 + -0.4 85,455 + GFF5221 0.32 -1.0 85,456 - GFF5221 0.32 -0.6 85,508 - GFF5221 0.39 +0.6 85,578 + GFF5221 0.47 -0.5 85,696 - GFF5221 0.62 -0.9 85,696 - GFF5221 0.62 -0.4 85,926 + GFF5221 0.89 -0.5 86,073 + +0.1 86,073 + +0.5 86,073 + +0.8 86,073 + -0.1 86,074 - +0.9 86,074 - -0.2 86,074 - +0.1 86,074 - -0.3 86,107 + GFF5222 0.16 -0.5 86,414 - GFF5223 0.20 +1.2 86,734 + GFF5223 0.55 -0.4 86,735 - GFF5223 0.56 +0.0 86,735 - GFF5223 0.56 -0.5 86,735 - GFF5223 0.56 -2.0 86,941 + GFF5223 0.78 +1.0 86,942 - GFF5223 0.79 -0.2 86,942 - GFF5223 0.79 -1.1
Or see this region's nucleotide sequence