Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5185 and GFF5186 overlap by 4 nucleotides GFF5186 and GFF5187 are separated by 27 nucleotides
GFF5185 - FIG00732904: hypothetical protein, at 38,479 to 43,239
GFF5185
GFF5186 - hypothetical protein, at 43,236 to 44,177
GFF5186
GFF5187 - Aldose 1-epimerase (EC 5.1.3.3), at 44,205 to 45,284
GFF5187
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 42.244 kb on + strand, within GFF5185 at 42.244 kb on + strand, within GFF5185 at 42.245 kb on - strand, within GFF5185 at 42.245 kb on - strand, within GFF5185 at 42.245 kb on - strand, within GFF5185 at 42.245 kb on - strand, within GFF5185 at 42.445 kb on + strand, within GFF5185 at 42.446 kb on - strand, within GFF5185 at 42.667 kb on + strand, within GFF5185 at 43.138 kb on + strand at 43.235 kb on + strand at 43.235 kb on + strand at 43.235 kb on + strand at 43.235 kb on + strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.419 kb on + strand, within GFF5186 at 43.419 kb on + strand, within GFF5186 at 43.420 kb on - strand, within GFF5186 at 43.650 kb on + strand, within GFF5186 at 43.650 kb on + strand, within GFF5186 at 43.651 kb on - strand, within GFF5186 at 43.651 kb on - strand, within GFF5186 at 43.651 kb on - strand, within GFF5186 at 43.929 kb on + strand, within GFF5186 at 43.929 kb on + strand, within GFF5186 at 43.930 kb on - strand, within GFF5186 at 43.930 kb on - strand, within GFF5186 at 44.106 kb on + strand at 44.200 kb on + strand at 44.268 kb on + strand at 44.400 kb on + strand, within GFF5187 at 44.401 kb on - strand, within GFF5187 at 44.619 kb on + strand, within GFF5187 at 44.619 kb on + strand, within GFF5187 at 44.619 kb on + strand, within GFF5187 at 44.676 kb on + strand, within GFF5187 at 44.716 kb on - strand, within GFF5187 at 44.766 kb on + strand, within GFF5187 at 44.766 kb on + strand, within GFF5187 at 44.767 kb on - strand, within GFF5187 at 44.767 kb on - strand, within GFF5187 at 44.835 kb on + strand, within GFF5187 at 44.913 kb on - strand, within GFF5187 at 44.970 kb on + strand, within GFF5187 at 45.097 kb on - strand, within GFF5187
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 42,244 + GFF5185 0.79 -0.4 42,244 + GFF5185 0.79 -0.3 42,245 - GFF5185 0.79 -1.0 42,245 - GFF5185 0.79 +0.8 42,245 - GFF5185 0.79 +0.0 42,245 - GFF5185 0.79 +0.1 42,445 + GFF5185 0.83 -0.5 42,446 - GFF5185 0.83 -0.2 42,667 + GFF5185 0.88 -0.0 43,138 + -1.3 43,235 + +0.0 43,235 + -0.2 43,235 + -0.5 43,235 + -0.3 43,236 - -0.3 43,236 - -0.1 43,236 - -0.5 43,236 - -0.5 43,236 - +0.0 43,236 - -0.7 43,236 - -0.2 43,419 + GFF5186 0.19 -0.1 43,419 + GFF5186 0.19 +0.6 43,420 - GFF5186 0.20 -0.2 43,650 + GFF5186 0.44 +0.2 43,650 + GFF5186 0.44 +1.2 43,651 - GFF5186 0.44 +0.8 43,651 - GFF5186 0.44 +0.2 43,651 - GFF5186 0.44 -0.1 43,929 + GFF5186 0.74 +0.1 43,929 + GFF5186 0.74 +2.1 43,930 - GFF5186 0.74 -0.4 43,930 - GFF5186 0.74 -0.1 44,106 + -1.5 44,200 + -0.0 44,268 + -2.8 44,400 + GFF5187 0.18 +0.5 44,401 - GFF5187 0.18 +0.8 44,619 + GFF5187 0.38 +0.4 44,619 + GFF5187 0.38 -0.2 44,619 + GFF5187 0.38 -0.4 44,676 + GFF5187 0.44 +0.5 44,716 - GFF5187 0.47 -0.4 44,766 + GFF5187 0.52 -0.4 44,766 + GFF5187 0.52 +0.2 44,767 - GFF5187 0.52 -2.0 44,767 - GFF5187 0.52 +0.5 44,835 + GFF5187 0.58 -0.1 44,913 - GFF5187 0.66 -0.3 44,970 + GFF5187 0.71 -0.4 45,097 - GFF5187 0.83 +0.7
Or see this region's nucleotide sequence