Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5165 and GFF5166 are separated by 174 nucleotides GFF5166 and GFF5167 are separated by 66 nucleotides GFF5167 and GFF5168 are separated by 92 nucleotides GFF5168 and GFF5169 are separated by 15 nucleotides
GFF5165 - Transcriptional regulator, LysR family, at 18,562 to 19,545
GFF5165
GFF5166 - hypothetical protein, at 19,720 to 20,043
GFF5166
GFF5167 - BLUF domain protein, at 20,110 to 20,514
GFF5167
GFF5168 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 20,607 to 21,377
GFF5168
GFF5169 - hypothetical protein, at 21,393 to 22,247
GFF5169
Position (kb) 20
21 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 19.157 kb on - strand, within GFF5165 at 19.264 kb on + strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.265 kb on - strand, within GFF5165 at 19.565 kb on + strand at 19.565 kb on + strand at 19.566 kb on - strand at 19.605 kb on + strand at 19.605 kb on + strand at 19.605 kb on + strand at 19.605 kb on + strand at 19.605 kb on + strand at 19.606 kb on - strand at 19.610 kb on + strand at 19.611 kb on - strand at 19.611 kb on - strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.023 kb on + strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.024 kb on - strand at 20.240 kb on + strand, within GFF5167 at 20.240 kb on + strand, within GFF5167 at 20.241 kb on - strand, within GFF5167 at 20.241 kb on - strand, within GFF5167 at 20.267 kb on + strand, within GFF5167 at 20.267 kb on + strand, within GFF5167 at 20.267 kb on + strand, within GFF5167 at 20.267 kb on + strand, within GFF5167 at 20.267 kb on + strand, within GFF5167 at 20.268 kb on - strand, within GFF5167 at 20.268 kb on - strand, within GFF5167 at 20.268 kb on - strand, within GFF5167 at 20.268 kb on - strand, within GFF5167 at 20.268 kb on - strand, within GFF5167 at 20.268 kb on - strand, within GFF5167 at 20.480 kb on + strand at 20.480 kb on + strand at 20.481 kb on - strand at 20.492 kb on + strand at 20.492 kb on + strand at 20.546 kb on + strand at 20.546 kb on + strand at 20.546 kb on + strand at 20.546 kb on + strand at 20.546 kb on + strand at 20.546 kb on + strand at 20.546 kb on + strand at 20.547 kb on - strand at 20.547 kb on - strand at 20.547 kb on - strand at 20.547 kb on - strand at 20.547 kb on - strand at 20.547 kb on - strand at 20.547 kb on - strand at 20.596 kb on + strand at 20.596 kb on + strand at 20.596 kb on + strand at 20.596 kb on + strand at 20.596 kb on + strand at 20.596 kb on + strand at 20.596 kb on + strand at 20.596 kb on + strand at 20.596 kb on + strand at 20.596 kb on + strand at 20.596 kb on + strand at 20.596 kb on + strand at 20.597 kb on - strand at 20.597 kb on - strand at 20.597 kb on - strand at 20.597 kb on - strand at 20.598 kb on + strand at 20.598 kb on + strand at 20.598 kb on + strand at 20.598 kb on + strand at 20.598 kb on + strand at 20.598 kb on + strand at 20.598 kb on + strand at 20.598 kb on + strand at 20.599 kb on - strand at 20.599 kb on - strand at 20.599 kb on - strand at 20.599 kb on - strand at 20.599 kb on - strand at 20.599 kb on - strand at 20.599 kb on - strand at 20.622 kb on + strand at 20.622 kb on + strand at 20.623 kb on - strand at 20.623 kb on - strand at 20.623 kb on - strand at 20.817 kb on + strand, within GFF5168 at 20.817 kb on + strand, within GFF5168 at 20.817 kb on + strand, within GFF5168 at 20.817 kb on + strand, within GFF5168 at 20.818 kb on - strand, within GFF5168 at 20.818 kb on - strand, within GFF5168 at 20.838 kb on + strand, within GFF5168 at 20.838 kb on + strand, within GFF5168 at 20.838 kb on + strand, within GFF5168 at 20.839 kb on - strand, within GFF5168 at 20.839 kb on - strand, within GFF5168 at 20.839 kb on - strand, within GFF5168 at 20.839 kb on - strand, within GFF5168 at 20.839 kb on - strand, within GFF5168 at 20.839 kb on - strand, within GFF5168 at 21.024 kb on + strand, within GFF5168 at 21.024 kb on + strand, within GFF5168 at 21.025 kb on - strand, within GFF5168 at 21.025 kb on - strand, within GFF5168 at 21.025 kb on - strand, within GFF5168 at 21.025 kb on - strand, within GFF5168 at 21.025 kb on - strand, within GFF5168 at 21.135 kb on + strand, within GFF5168 at 21.136 kb on - strand, within GFF5168 at 21.276 kb on + strand, within GFF5168 at 21.276 kb on + strand, within GFF5168 at 21.276 kb on + strand, within GFF5168 at 21.276 kb on + strand, within GFF5168 at 21.276 kb on + strand, within GFF5168 at 21.276 kb on + strand, within GFF5168 at 21.276 kb on + strand, within GFF5168 at 21.276 kb on + strand, within GFF5168 at 21.277 kb on - strand, within GFF5168 at 21.277 kb on - strand, within GFF5168 at 21.277 kb on - strand, within GFF5168 at 21.277 kb on - strand, within GFF5168 at 21.277 kb on - strand, within GFF5168 at 21.277 kb on - strand, within GFF5168 at 21.430 kb on + strand at 21.430 kb on + strand at 21.430 kb on + strand at 21.430 kb on + strand at 21.430 kb on + strand at 21.430 kb on + strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.431 kb on - strand at 21.431 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 19,157 - GFF5165 0.60 -0.3 19,264 + GFF5165 0.71 +0.5 19,265 - GFF5165 0.71 -2.1 19,265 - GFF5165 0.71 -0.4 19,265 - GFF5165 0.71 +0.5 19,265 - GFF5165 0.71 -1.4 19,265 - GFF5165 0.71 +0.2 19,265 - GFF5165 0.71 -0.1 19,565 + +0.5 19,565 + +0.5 19,566 - -0.2 19,605 + -1.3 19,605 + +0.7 19,605 + +0.8 19,605 + -0.2 19,605 + +0.1 19,606 - -0.1 19,610 + -0.4 19,611 - +0.4 19,611 - -1.0 20,023 + -0.0 20,023 + +0.1 20,023 + +0.0 20,023 + -0.2 20,023 + -0.5 20,023 + -0.1 20,023 + -0.3 20,023 + -0.6 20,023 + -0.1 20,023 + -0.3 20,023 + +0.8 20,023 + -0.2 20,023 + +1.3 20,023 + +0.8 20,024 - -0.5 20,024 - +1.0 20,024 - -0.6 20,024 - +1.0 20,024 - +0.8 20,024 - -0.3 20,024 - -0.3 20,024 - -0.4 20,024 - -1.1 20,024 - -0.5 20,024 - +0.8 20,024 - -0.4 20,240 + GFF5167 0.32 +0.0 20,240 + GFF5167 0.32 -0.8 20,241 - GFF5167 0.32 +1.0 20,241 - GFF5167 0.32 +0.7 20,267 + GFF5167 0.39 +0.5 20,267 + GFF5167 0.39 -0.2 20,267 + GFF5167 0.39 +0.1 20,267 + GFF5167 0.39 +0.2 20,267 + GFF5167 0.39 +0.4 20,268 - GFF5167 0.39 +0.8 20,268 - GFF5167 0.39 +1.8 20,268 - GFF5167 0.39 +2.8 20,268 - GFF5167 0.39 -1.0 20,268 - GFF5167 0.39 +0.8 20,268 - GFF5167 0.39 -0.0 20,480 + -0.1 20,480 + +0.2 20,481 - +0.8 20,492 + -0.9 20,492 + -1.0 20,546 + -1.9 20,546 + -1.9 20,546 + -1.4 20,546 + -0.0 20,546 + -0.5 20,546 + -1.4 20,546 + -1.4 20,547 - -0.4 20,547 - -0.3 20,547 - -0.1 20,547 - -0.8 20,547 - -0.8 20,547 - -0.5 20,547 - +0.8 20,596 + -0.0 20,596 + -0.2 20,596 + -0.7 20,596 + -0.7 20,596 + -0.4 20,596 + +0.6 20,596 + -1.2 20,596 + -0.2 20,596 + +0.0 20,596 + +0.4 20,596 + -0.8 20,596 + +0.8 20,597 - +0.4 20,597 - +1.0 20,597 - -0.9 20,597 - -1.2 20,598 + -0.4 20,598 + -0.6 20,598 + -2.1 20,598 + -0.8 20,598 + -0.1 20,598 + -0.3 20,598 + +0.2 20,598 + -1.0 20,599 - +0.2 20,599 - -0.0 20,599 - +0.1 20,599 - -1.0 20,599 - -0.1 20,599 - +1.2 20,599 - +0.5 20,622 + -0.4 20,622 + +0.3 20,623 - +0.9 20,623 - +0.3 20,623 - -0.1 20,817 + GFF5168 0.27 +1.0 20,817 + GFF5168 0.27 -1.6 20,817 + GFF5168 0.27 -0.7 20,817 + GFF5168 0.27 -1.0 20,818 - GFF5168 0.27 -0.2 20,818 - GFF5168 0.27 -0.8 20,838 + GFF5168 0.30 +0.5 20,838 + GFF5168 0.30 -0.4 20,838 + GFF5168 0.30 +1.8 20,839 - GFF5168 0.30 -1.4 20,839 - GFF5168 0.30 +0.2 20,839 - GFF5168 0.30 -0.3 20,839 - GFF5168 0.30 -0.2 20,839 - GFF5168 0.30 +1.0 20,839 - GFF5168 0.30 -0.6 21,024 + GFF5168 0.54 -0.7 21,024 + GFF5168 0.54 -0.3 21,025 - GFF5168 0.54 +0.4 21,025 - GFF5168 0.54 +0.6 21,025 - GFF5168 0.54 -0.5 21,025 - GFF5168 0.54 +0.5 21,025 - GFF5168 0.54 +0.0 21,135 + GFF5168 0.68 +0.6 21,136 - GFF5168 0.69 +0.8 21,276 + GFF5168 0.87 +0.2 21,276 + GFF5168 0.87 +0.1 21,276 + GFF5168 0.87 -0.1 21,276 + GFF5168 0.87 -0.2 21,276 + GFF5168 0.87 -0.4 21,276 + GFF5168 0.87 +0.1 21,276 + GFF5168 0.87 -1.4 21,276 + GFF5168 0.87 -0.2 21,277 - GFF5168 0.87 -0.2 21,277 - GFF5168 0.87 -0.2 21,277 - GFF5168 0.87 +0.1 21,277 - GFF5168 0.87 +0.5 21,277 - GFF5168 0.87 -1.0 21,277 - GFF5168 0.87 +1.8 21,430 + +0.1 21,430 + -0.1 21,430 + -0.5 21,430 + -0.6 21,430 + +0.6 21,430 + +0.6 21,431 - -0.7 21,431 - +0.8 21,431 - -1.0 21,431 - -0.2 21,431 - -0.3 21,431 - +0.0 21,431 - -0.1 21,431 - +1.4 21,431 - +0.6 21,431 - +0.2 21,431 - +0.7
Or see this region's nucleotide sequence