Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF508 and GFF509 are separated by 16 nucleotides GFF509 and GFF510 overlap by 4 nucleotides GFF510 and GFF511 overlap by 4 nucleotides GFF511 and GFF512 overlap by 4 nucleotides GFF512 and GFF513 are separated by 44 nucleotides
GFF508 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 549,582 to 550,649
GFF508
GFF509 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 550,666 to 551,646
GFF509
GFF510 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 551,643 to 552,371
GFF510
GFF511 - no description, at 552,368 to 552,514
GFF511
GFF512 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 552,511 to 553,278
GFF512
GFF513 - Chitinase (EC 3.2.1.14), at 553,323 to 554,780
GFF513
Position (kb) 551
552
553 Strain fitness (log2 ratio) -2
-1
0
1
2 at 550.685 kb on + strand at 550.686 kb on - strand at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.772 kb on + strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 550.773 kb on - strand, within GFF509 at 551.647 kb on - strand at 551.647 kb on - strand at 551.647 kb on - strand at 552.118 kb on + strand, within GFF510 at 552.118 kb on + strand, within GFF510 at 552.118 kb on + strand, within GFF510 at 552.118 kb on + strand, within GFF510 at 552.119 kb on - strand, within GFF510 at 552.119 kb on - strand, within GFF510 at 552.119 kb on - strand, within GFF510 at 552.119 kb on - strand, within GFF510 at 552.316 kb on + strand at 552.317 kb on - strand at 552.375 kb on + strand at 552.375 kb on + strand at 552.376 kb on - strand at 552.542 kb on + strand at 552.542 kb on + strand at 552.542 kb on + strand at 552.543 kb on - strand at 552.543 kb on - strand at 553.151 kb on + strand, within GFF512 at 553.151 kb on + strand, within GFF512 at 553.151 kb on + strand, within GFF512 at 553.151 kb on + strand, within GFF512 at 553.152 kb on - strand, within GFF512 at 553.152 kb on - strand, within GFF512 at 553.152 kb on - strand, within GFF512 at 553.152 kb on - strand, within GFF512 at 553.152 kb on - strand, within GFF512 at 553.152 kb on - strand, within GFF512 at 553.342 kb on + strand at 553.342 kb on + strand at 553.342 kb on + strand at 553.342 kb on + strand at 553.343 kb on - strand at 553.343 kb on - strand at 553.343 kb on - strand at 553.345 kb on + strand at 553.345 kb on + strand at 553.345 kb on + strand at 553.345 kb on + strand at 553.346 kb on - strand at 553.346 kb on - strand at 553.346 kb on - strand at 553.346 kb on - strand at 553.346 kb on - strand at 553.346 kb on - strand at 553.346 kb on - strand at 553.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 550,685 + +1.1 550,686 - +0.4 550,772 + GFF509 0.11 +0.3 550,772 + GFF509 0.11 +0.8 550,772 + GFF509 0.11 -1.5 550,772 + GFF509 0.11 +0.5 550,772 + GFF509 0.11 -0.5 550,772 + GFF509 0.11 -0.8 550,773 - GFF509 0.11 +0.1 550,773 - GFF509 0.11 -1.0 550,773 - GFF509 0.11 -0.0 550,773 - GFF509 0.11 +1.9 550,773 - GFF509 0.11 -0.4 550,773 - GFF509 0.11 -0.4 550,773 - GFF509 0.11 +0.5 550,773 - GFF509 0.11 -1.3 551,647 - -1.3 551,647 - -0.6 551,647 - -0.8 552,118 + GFF510 0.65 -0.4 552,118 + GFF510 0.65 -0.9 552,118 + GFF510 0.65 +0.2 552,118 + GFF510 0.65 -1.3 552,119 - GFF510 0.65 -0.4 552,119 - GFF510 0.65 -1.0 552,119 - GFF510 0.65 +1.1 552,119 - GFF510 0.65 -1.5 552,316 + -0.3 552,317 - -0.5 552,375 + -0.8 552,375 + +0.5 552,376 - -0.3 552,542 + -0.4 552,542 + -1.5 552,542 + -0.6 552,543 - -0.5 552,543 - -0.4 553,151 + GFF512 0.83 -1.0 553,151 + GFF512 0.83 -0.8 553,151 + GFF512 0.83 +0.2 553,151 + GFF512 0.83 -0.0 553,152 - GFF512 0.83 -0.1 553,152 - GFF512 0.83 -0.1 553,152 - GFF512 0.83 +0.6 553,152 - GFF512 0.83 -0.8 553,152 - GFF512 0.83 +0.8 553,152 - GFF512 0.83 +0.1 553,342 + -0.0 553,342 + -0.2 553,342 + -2.0 553,342 + -0.1 553,343 - -0.4 553,343 - +0.4 553,343 - -1.2 553,345 + -1.0 553,345 + -0.7 553,345 + -2.7 553,345 + -0.7 553,346 - +1.1 553,346 - -1.0 553,346 - +0.0 553,346 - +0.2 553,346 - -0.5 553,346 - -0.0 553,346 - -0.6 553,346 - +0.0
Or see this region's nucleotide sequence